Arabidopsis lyrata         DUB/USP


※ DUB/USP family introduction

    USP is a family of cysteine peptidases, which belongs to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14 (1).

1. http://www.ebi.ac.uk/interpro/entry/IPR001394




There are 41 genes.  Reviewed (0 or Unreviewed (41Download the gene list
StatusiUUCD IDEnsemble Gene IDUniProt AccessionGene Name
IUUC-Aly-006021
scaffold_801259.1
D7MN59
ARALYDRAFT_917859
IUUC-Aly-005458
scaffold_800154.1
D7MQQ1
UBP21; ARALYDRAFT_916754
IUUC-Aly-006038
scaffold_701125.1
D7MBK9
UBP24; ARALYDRAFT_913383
IUUC-Aly-006368
scaffold_700971.1
D7MAQ5
ARALYDRAFT_913229
IUUC-Aly-005637
scaffold_603058.1
D7M7K4
ARALYDRAFT_911001
IUUC-Aly-006567
scaffold_603057.1
D7M7K3
ARALYDRAFT_911000
IUUC-Aly-005644
scaffold_402896.1
D7LFW0
UBP5; ARALYDRAFT_903395
IUUC-Aly-006227
scaffold_300308.1
D7L0G7
ARALYDRAFT_896338
IUUC-Aly-006569
scaffold_202851.1
D7KVU9
ARALYDRAFT_895777
IUUC-Aly-006078
scaffold_104942.1
D7KHV0
UBP6; ARALYDRAFT_892148
IUUC-Aly-006177
scaffold_104805.1
D7KGS2
ARALYDRAFT_892011
IUUC-Aly-006514
scaffold_104257.1
D7KPU9
ARALYDRAFT_891463
IUUC-Aly-006034
scaffold_101900.1
D7KEL9
UBP15; ARALYDRAFT_889106
IUUC-Aly-006389
fgenesh2_kg.8__1718__AT5G57990.1
D7MNY5
UBP23; ARALYDRAFT_495902
IUUC-Aly-005830
fgenesh2_kg.7__210__AT4G39910.1
D7M971
ATUBP3; ARALYDRAFT_490777
IUUC-Aly-005683
fgenesh2_kg.7__2062__AT4G22350.1
D7ME50
ARALYDRAFT_492629
IUUC-Aly-005811
fgenesh2_kg.7__1819__AT4G24560.1
D7MGQ1
UBP16; ARALYDRAFT_492386
IUUC-Aly-005863
fgenesh2_kg.7__1006__AT4G31670.1
D7MB42
UBP18; ARALYDRAFT_491573
IUUC-Aly-006427
fgenesh2_kg.6__604__AT5G06600.1
D7LZS2
UBP12; ARALYDRAFT_487470
IUUC-Aly-006565
fgenesh2_kg.6__1047__AT5G10790.1
D7M3I7
UBP22; ARALYDRAFT_487913
IUUC-Aly-006249
fgenesh2_kg.5__1309__AT3G49600.1
D7LSK7
UBP26; ARALYDRAFT_485317
IUUC-Aly-005859
fgenesh2_kg.5__1145__AT3G47890.1
D7LRG8
ARALYDRAFT_485153
IUUC-Aly-005942
fgenesh2_kg.4__383__AT2G24640.1
D7LIB1
UBP19; ARALYDRAFT_481323
IUUC-Aly-005530
fgenesh2_kg.4__155__AT2G22310.1
D7LDE7
UBP4; ARALYDRAFT_481095
IUUC-Aly-005428
fgenesh2_kg.3__2590__AT3G23740.1
D7L3H0
ARALYDRAFT_479889
IUUC-Aly-006176
fgenesh2_kg.3__2348__AT3G21280.1
D7L0R1
UBP7; ARALYDRAFT_479647
IUUC-Aly-005727
fgenesh2_kg.3__2290__AT3G20630.1
D7KZU5
UBP14; ARALYDRAFT_479589
IUUC-Aly-005983
fgenesh2_kg.3__1560__AT3G14400.1
D7L345
UBP25; ARALYDRAFT_478859
IUUC-Aly-005494
fgenesh2_kg.1__424__AT1G04860.1
D7KE85
UBP2; ARALYDRAFT_470470
IUUC-Aly-006315
fgenesh2_kg.1__3422__AT1G32850.1
D7KID0
UBP11; ARALYDRAFT_473468
IUUC-Aly-006266
fgenesh1_pm.C_scaffold_8002104
D7MTY4
UBP17; ARALYDRAFT_332761
IUUC-Aly-006314
fgenesh1_pm.C_scaffold_7001965
D7MDD5
UBP20; ARALYDRAFT_329738
IUUC-Aly-005456
fgenesh1_pm.C_scaffold_6001734
D7M0S9
UBP8; ARALYDRAFT_326514
IUUC-Aly-006453
fgenesh1_pm.C_scaffold_3000987
D7LAT1
UBP13; ARALYDRAFT_317971
IUUC-Aly-006044
fgenesh1_pg.C_scaffold_6002724
D7LYQ3
ARALYDRAFT_352131
IUUC-Aly-006550
fgenesh1_pg.C_scaffold_1002869
D7KHH7
ARALYDRAFT_336304
IUUC-Aly-005754
Al_scaffold_0007_130
D7M8I9
UBP27; ARALYDRAFT_656075
IUUC-Aly-005468
Al_scaffold_0005_1600
D7LRG9
ARALYDRAFT_665565
IUUC-Aly-006402
Al_scaffold_0004_652
D7LL64
ARALYDRAFT_667933
IUUC-Aly-005604
Al_scaffold_0004_452
D7LI78
ARALYDRAFT_667733
IUUC-Aly-006422
Al_scaffold_0004_1740
D7LFL0
UBP1; ARALYDRAFT_669021