Arabidopsis lyrata         E3 activity/RING/PHD


※ E3 activity/RING/PHD family introduction

    The plant homeodomain (PHD) zinc finger domain has a C4HC3-type motif, and is widely distributed in eukaryotes, being found in many chromatin regulatory factors (1).PHD is thought to be involved in chromatin-mediated transcriptional regulation (2). The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger.

1. http://pfam.xfam.org/family/PF00628

2. Rein Aasland, Toby J. Gibson, A.Francis Stewart (1995). The PHD finger: Implications for chromatin-mediated transcriptional regulation. Trends in Biochemical Sciences., 20(2):56-59. PMID:77015622




There are 23 genes.  Reviewed (0 or Unreviewed (23Download the gene list
StatusiUUCD IDEnsemble Gene IDUniProt AccessionGene Name
IUUC-Aly-005645
scaffold_800493.1
D7MLG9
CHR4; ARALYDRAFT_917093
IUUC-Aly-006293
scaffold_503436.1
D7LSN8
ARALYDRAFT_907732
IUUC-Aly-005416
scaffold_503416.1
D7LSC9
ARALYDRAFT_907712
IUUC-Aly-006239
scaffold_501320.1
D7LNH7
ARALYDRAFT_905616
IUUC-Aly-006448
scaffold_401699.1
D7LDN0
ATX1; ARALYDRAFT_902198
IUUC-Aly-006097
scaffold_300074.1
D7L9P7
MBD9; ARALYDRAFT_896104
IUUC-Aly-005706
fgenesh2_kg.8__2397__AT5G63900.1
D7MQI8
ARALYDRAFT_496581
IUUC-Aly-006507
fgenesh2_kg.8__2005__AT5G60410.5
D7MTU4
ATSIZ1; ARALYDRAFT_496189
IUUC-Aly-006105
fgenesh2_kg.8__1438__AT5G55390.1
D7MKH2
EDM2; ARALYDRAFT_495622
IUUC-Aly-005443
fgenesh2_kg.7__111__AT4G39100.1
D7MGB3
SHL1; ARALYDRAFT_490678
IUUC-Aly-005695
fgenesh2_kg.6__3199__AT4G12620.1
D7M142
ORC1B; ARALYDRAFT_490065
IUUC-Aly-006555
fgenesh2_kg.4__1807__AT2G37520.1
D7LJU5
ARALYDRAFT_482747
IUUC-Aly-006363
fgenesh2_kg.3__844__AT3G08020.1
D7L741
ARALYDRAFT_478143
IUUC-Aly-005815
fgenesh2_kg.3__2635__AT3G24010.1
D7L4A7
ING1; ARALYDRAFT_479934
IUUC-Aly-006209
fgenesh2_kg.2__2230__AT1G79350.1
D7KWH0
EMB1135; ARALYDRAFT_477100
IUUC-Aly-005868
fgenesh2_kg.1__1579__AT1G14510.1
D7KBK9
AL7; ARALYDRAFT_471625
IUUC-Aly-005717
fgenesh1_pm.C_scaffold_7001632
D7ME75
EBS; ARALYDRAFT_329405
IUUC-Aly-005877
fgenesh1_pm.C_scaffold_6002608
D7M165
ARALYDRAFT_327388
IUUC-Aly-006442
fgenesh1_pg.C_scaffold_8001866
D7MQF8
ARALYDRAFT_358079
IUUC-Aly-005651
fgenesh1_pg.C_scaffold_5001699
D7LU24
ARALYDRAFT_348307
IUUC-Aly-005677
fgenesh1_pg.C_scaffold_2001986
D7KUH2
ARALYDRAFT_339887
IUUC-Aly-006057
Al_scaffold_0005_2268
D7LUL2
ARALYDRAFT_666233
IUUC-Aly-005490
Al_scaffold_0005_1290
D7LNP2
ARALYDRAFT_665255