Arabidopsis lyrata         E3 activity/RING/U-box


※ E3 activity/RING/U-box family introduction

    The U-box is a protein domain with about 70 amino acids. Although the U-box domain is similar with the RING domain, the zinc-binding sites in the RING domain are replaced by conserved charged and polar residues to maintain structure and activity (1). Previously, the U-box protein was considered as a ubiquitin chain assembly factor to catalyze the formation of a ubiquitin chain on ubiquitinated substrates, while recent studies showed that it could mediate polyubiquitylation in the absence of a HECT type or RING-finger type E3. Although the understanding of the detailed mechanisms and functions of the U-box proteins are still limited, it is proposed that they are involved in various biological processes such as the cellular stress response to the intracellular accumulation of abnormal proteins (2).

1. http://www.ebi.ac.uk/interpro/entry/IPR003613

2. Hatakeyama, S. and K. I. Nakayama (2003) U-box proteins as a new family of ubiquitin ligases. Biochem. Biophys. Res. Commun., 302(4): 635-45. PMID: 12646216




There are 96 genes.  Reviewed (0 or Unreviewed (96Download the gene list
StatusiUUCD IDEnsemble Gene IDUniProt AccessionGene Name
IUUC-Aly-005689
scaffold_801869.1
D7MTI9
ARALYDRAFT_918469
IUUC-Aly-006313
scaffold_801559.1
D7MQY9
ARALYDRAFT_918159
IUUC-Aly-006301
scaffold_800951.1
D7MTF6
PUB15; ARALYDRAFT_917551
IUUC-Aly-005518
scaffold_703995.1
D7MJC0
ARALYDRAFT_916253
IUUC-Aly-005953
scaffold_703036.1
D7MAK7
ARALYDRAFT_915294
IUUC-Aly-006036
scaffold_702722.1
D7MBZ7
ARALYDRAFT_914980
IUUC-Aly-006175
scaffold_702287.1
D7MEU7
B80; ARALYDRAFT_914545
IUUC-Aly-005397
scaffold_701416.1
D7MDC4
ARALYDRAFT_913674
IUUC-Aly-006069
scaffold_603900.1
D7M2N1
RMA1; ARALYDRAFT_911843
IUUC-Aly-006129
scaffold_601900.1
D7LXU0
ARALYDRAFT_909843
IUUC-Aly-006103
scaffold_502603.1
D7LUY4
ATPUB14; ARALYDRAFT_906899
IUUC-Aly-005681
scaffold_501549.1
D7LN13
PUB13; ARALYDRAFT_905845
IUUC-Aly-006186
scaffold_402010.1
D7LGY9
ARALYDRAFT_902509
IUUC-Aly-006014
scaffold_401863.1
D7LFN5
COP1; ARALYDRAFT_902362
IUUC-Aly-006466
scaffold_302355.1
D7LA54
ARALYDRAFT_898385
IUUC-Aly-005609
scaffold_300868.1
D7L6J6
ARALYDRAFT_896898
IUUC-Aly-006049
scaffold_201324.1
D7KTK9
ATCMPG1; ARALYDRAFT_894250
IUUC-Aly-006412
scaffold_15800002.1
D7MWM6
ARALYDRAFT_920258
IUUC-Aly-006502
scaffold_105421.1
D7KNU9
ARALYDRAFT_892627
IUUC-Aly-006552
scaffold_105420.1
D7KNU8
ARALYDRAFT_892626
IUUC-Aly-006204
scaffold_104159.1
D7KNP4
SEU; ARALYDRAFT_891365
IUUC-Aly-005662
scaffold_103118.1
D7KBV1
PUB45; ARALYDRAFT_890324
IUUC-Aly-006513
scaffold_102488.1
D7KKY6
ARALYDRAFT_889694
IUUC-Aly-006004
scaffold_102325.1
D7KJ58
PUB44; ARALYDRAFT_889531
IUUC-Aly-006065
scaffold_102156.1
D7KHC3
ARALYDRAFT_889362
IUUC-Aly-006076
scaffold_102099.1
D7KH68
ARALYDRAFT_889305
IUUC-Aly-005586
scaffold_100412.1
D7KDF6
MAC3A; ARALYDRAFT_887618
IUUC-Aly-006444
fgenesh2_kg.8__54__AT5G47430.1
D7MPT9
ARALYDRAFT_494238
IUUC-Aly-005928
fgenesh2_kg.8__2658__AT5G67530.1
D7MUP6
ATPUB49; ARALYDRAFT_496842
IUUC-Aly-005400
fgenesh2_kg.8__2644__AT5G65920.1
D7MUN3
ARALYDRAFT_496828
IUUC-Aly-005887
fgenesh2_kg.8__2561__AT5G65200.1
D7MT91
PUB38; ARALYDRAFT_496745
IUUC-Aly-005744
fgenesh2_kg.8__2496__AT5G64660.1
D7MRW3
ATCMPG2; ARALYDRAFT_496680
IUUC-Aly-006242
fgenesh2_kg.8__2251__AT5G62560.1
D7MMC1
ARALYDRAFT_496435
IUUC-Aly-006392
fgenesh2_kg.8__2137__AT5G61560.1
D7MV34
ARALYDRAFT_496321
IUUC-Aly-006026
fgenesh2_kg.8__2134__AT5G61550.1
D7MV32
ARALYDRAFT_496318
IUUC-Aly-006171
fgenesh2_kg.7__3158__AT5G37490.1
D7MID4
ARALYDRAFT_493725
IUUC-Aly-005861
fgenesh2_kg.7__1751__AT4G25160.1
D7MGJ0
ARALYDRAFT_492318
IUUC-Aly-006090
fgenesh2_kg.7__1481__AT4G27470.1
D7MEF3
ATRMA3; ARALYDRAFT_492048
IUUC-Aly-005578
fgenesh2_kg.7__1379__AT4G28270.1
D7MDL3
ATRMA2; ARALYDRAFT_491946
IUUC-Aly-005648
fgenesh2_kg.6__935__AT5G09800.1
D7M274
ARALYDRAFT_487801
IUUC-Aly-005602
fgenesh2_kg.6__448__AT5G05230.1
D7LYC1
ARALYDRAFT_487314
IUUC-Aly-005511
fgenesh2_kg.6__2896__AT4G08590.1
D7M8G6
ORL1; ARALYDRAFT_489762
IUUC-Aly-005828
fgenesh2_kg.6__19__AT5G01830.1
D7M6E9
ARALYDRAFT_486885
IUUC-Aly-006300
fgenesh2_kg.6__1520__AT5G15400.1
D7M7C3
ARALYDRAFT_488386
IUUC-Aly-006126
fgenesh2_kg.5__2246__AT3G58030.2
D7LVZ3
ARALYDRAFT_486254
IUUC-Aly-005797
fgenesh2_kg.5__1604__AT3G52450.1
D7LU64
PUB22; ARALYDRAFT_485612
IUUC-Aly-005542
fgenesh2_kg.5__1333__AT3G49810.1
D7LSY5
ARALYDRAFT_485341
IUUC-Aly-006439
fgenesh2_kg.5__1252__AT3G49060.1
D7LS36
ARALYDRAFT_485260
IUUC-Aly-005903
fgenesh2_kg.5__1137__AT3G47820.1
D7LRF7
ARALYDRAFT_485145
IUUC-Aly-005785
fgenesh2_kg.4__300__AT2G23780.1
D7LG24
ARALYDRAFT_481240
IUUC-Aly-006216
fgenesh2_kg.4__2792__AT2G45920.1
D7LDA3
ARALYDRAFT_483732
IUUC-Aly-005712
fgenesh2_kg.4__2791__AT2G45910.1
D7LDA2
ARALYDRAFT_483731
IUUC-Aly-006261
fgenesh2_kg.4__246__AT2G23140.1
D7LEP3
ARALYDRAFT_481186
IUUC-Aly-005506
fgenesh2_kg.4__2349__AT2G42030.1
D7LI12
ARALYDRAFT_483289
IUUC-Aly-005843
fgenesh2_kg.4__2181__AT2G40640.1
D7LFT0
ARALYDRAFT_483121
IUUC-Aly-006194
fgenesh2_kg.4__1623__AT2G35930.1
D7LIM0
PUB23; ARALYDRAFT_482563
IUUC-Aly-006002
fgenesh2_kg.4__1334__AT2G33340.1
D7LFS8
MAC3B; ARALYDRAFT_482274
IUUC-Aly-006136
fgenesh2_kg.365__1__AT5G61550.1
D7MXD6
ARALYDRAFT_497409
IUUC-Aly-006292
fgenesh2_kg.3__759__AT3G07370.1
D7L6J7
ATCHIP; ARALYDRAFT_478058
IUUC-Aly-006085
fgenesh2_kg.3__2157__AT3G19380.1
D7L9Y6
PUB25; ARALYDRAFT_479456
IUUC-Aly-006554
fgenesh2_kg.3__2078__AT3G18710.1
D7L940
PUB29; ARALYDRAFT_479377
IUUC-Aly-006420
fgenesh2_kg.267__3__AT3G07360.1
D7MX21
ARALYDRAFT_497366
IUUC-Aly-006337
fgenesh2_kg.2__430__AT1G60190.1
D7KXB5
ARALYDRAFT_475300
IUUC-Aly-006316
fgenesh2_kg.2__295__AT1G61620.1
D7KVI6
ARALYDRAFT_475165
IUUC-Aly-005480
fgenesh2_kg.2__1924__AT1G76390.2
D7KTC8
ARALYDRAFT_476794
IUUC-Aly-006344
fgenesh2_kg.2__1767__AT1G74990.1
D7KSJ4
ARALYDRAFT_476637
IUUC-Aly-005733
fgenesh2_kg.2__1363__AT1G71020.1
D7KYH8
ARALYDRAFT_476233
IUUC-Aly-005606
fgenesh2_kg.1__4063__AT1G49780.1
D7KF20
ARALYDRAFT_474109
IUUC-Aly-006027
fgenesh2_kg.1__3098__AT1G29340.1
D7KDS9
PUB17; ARALYDRAFT_473144
IUUC-Aly-006405
fgenesh2_kg.1__2866__AT1G24330.1
D7KAP1
ARALYDRAFT_472912
IUUC-Aly-005917
fgenesh2_kg.1__2507__AT1G23030.1
D7KMM1
ARALYDRAFT_472553
IUUC-Aly-005476
fgenesh2_kg.1__2042__AT1G18660.4
D7KGG4
ARALYDRAFT_472088
IUUC-Aly-006201
fgenesh2_kg.1__1125__AT1G10560.1
D7KKS9
PUB18; ARALYDRAFT_471171
IUUC-Aly-005429
fgenesh1_pm.C_scaffold_8002110
D7MTZ0
ARALYDRAFT_332767
IUUC-Aly-005867
fgenesh1_pm.C_scaffold_8001343
D7MM98
ARALYDRAFT_332000
IUUC-Aly-006557
fgenesh1_pm.C_scaffold_8000236
D7MKY1
ARALYDRAFT_330893
IUUC-Aly-005439
fgenesh1_pm.C_scaffold_5001553
D7LUX6
ARALYDRAFT_324009
IUUC-Aly-006566
fgenesh1_pm.C_scaffold_4000727
D7LK90
PUB12; ARALYDRAFT_320670
IUUC-Aly-006459
fgenesh1_pm.C_scaffold_3002622
D7L7I9
ARALYDRAFT_319606
IUUC-Aly-006182
fgenesh1_pm.C_scaffold_2000802
D7KVL0
ARALYDRAFT_315769
IUUC-Aly-006276
fgenesh1_pm.C_scaffold_2000469
D7KYM7
VIM1; ARALYDRAFT_315436
IUUC-Aly-005938
fgenesh1_pg.C_scaffold_8002613
D7MV54
ARALYDRAFT_358826
IUUC-Aly-005788
fgenesh1_pg.C_scaffold_7000359
D7MBG7
ARALYDRAFT_353186
IUUC-Aly-005647
fgenesh1_pg.C_scaffold_6001531
D7LXU1
ARALYDRAFT_350938
IUUC-Aly-006382
fgenesh1_pg.C_scaffold_3001067
D7LAS1
PUB24; ARALYDRAFT_341304
IUUC-Aly-006424
fgenesh1_pg.C_scaffold_2001237
D7KWW8
ARALYDRAFT_339138
IUUC-Aly-006348
fgenesh1_pg.C_scaffold_2000625
D7KYN1
ARALYDRAFT_338526
IUUC-Aly-006058
fgenesh1_pg.C_scaffold_1000054
D7KQ49
ARALYDRAFT_333489
IUUC-Aly-006140
Al_scaffold_0008_1497
D7MQY8
ARALYDRAFT_684677
IUUC-Aly-006203
Al_scaffold_0006_1751
D7LXU2
ARALYDRAFT_661686
IUUC-Aly-005485
Al_scaffold_0006_1748
D7LXT9
ARALYDRAFT_661683
IUUC-Aly-006215
Al_scaffold_0005_3068
D7LS91
ARALYDRAFT_667033
IUUC-Aly-005874
Al_scaffold_0002_1165
D7KT43
ARALYDRAFT_676015
IUUC-Aly-006467
Al_scaffold_0002_1164
D7KT42
ARALYDRAFT_676014
IUUC-Aly-005816
Al_scaffold_0001_58
D7KP83
ATPUB54; ARALYDRAFT_677735
IUUC-Aly-005758
Al_scaffold_0001_4994
D7KNU7
ARALYDRAFT_682671