Petromyzon marinus         E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box


※ E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box family introduction

    SOCS/VHL/BC-box represents a family that comprises SOCS proteins, VHL proteins and only BC-box containing proteins. The BC-box is a sub-domain that exists in both the SOCS and VHL domains and facilitates binding to the Elongin-B/C complex. SOCS is an ~80-residue domain named "Supressors Of Cytokine Signaling", which is located in the C-terminus and specifically recognize and bind a substrate. VHL is named "Von-Hippel Lindau", which forms the core of a large BCR E3 ubiquitin ligase complex. Compared to the SOCS domain, VHL lacks a C-terminal sequence (downstream of the BC-box) of the SOCS. VHL protein specifically interacts with endogenous Cul2-Rbx1 in mammalian cells. VHL or SOCS can serve as a substrate recognition subunit and form a BCR ubiquitin ligase complex, which targets the substrates for proteasome degradation (1).

1. Kamura, T., Maenaka, K., Kotoshiba, S., Matsumoto, M., Kohda, D., Conaway, R.C., Conaway, J.W. and Nakayama, K.I. (2004). VHL-box and SOCS-box domains determine binding specificity for Cul2-Rbx1 and Cul5-Rbx2 modules of ubiquitin ligases. Genes Dev., 18, 3055-3065. PMID: 15601820




There are 18 genes.  Reviewed (0 or Unreviewed (18Download the gene list
StatusiUUCD IDEnsemble Gene IDUniProt AccessionGene Name
IUUC-Pma-094253
ENSPMAG00000010176.1
S4S115
SOCS6
IUUC-Pma-094129
ENSPMAG00000009828.1
S4S011
vhl
IUUC-Pma-094752
ENSPMAG00000009071.1
S4RXP2
MED8
IUUC-Pma-094633
ENSPMAG00000008675.1
S4RWG3
IUUC-Pma-094401
ENSPMAG00000008528.1
S4RW06
rab40c (1 of many)
IUUC-Pma-094379
ENSPMAG00000008447.1
S4RVR4
tmf1
IUUC-Pma-094222
ENSPMAG00000008039.1
S4RUF1
IUUC-Pma-094679
ENSPMAG00000007649.1
S4RT72
rab40c (1 of many)
IUUC-Pma-094206
ENSPMAG00000007090.1
S4RRI1
neurl2
IUUC-Pma-094270
ENSPMAG00000005558.1
S4RLP8
asb2a.1
IUUC-Pma-094421
ENSPMAG00000004872.1
S4RJE4
IUUC-Pma-094683
ENSPMAG00000004831.1
S4RJB0
IUUC-Pma-094443
ENSPMAG00000004789.1
S4RJ70
LRR1
IUUC-Pma-094441
ENSPMAG00000004490.1
S4RI98
IUUC-Pma-094205
ENSPMAG00000002859.1
S4RD32
asb7
IUUC-Pma-094342
ENSPMAG00000002077.1
S4RAN9
asb5a
IUUC-Pma-094518
ENSPMAG00000001733.1
S4R9L4
IUUC-Pma-094671
ENSPMAG00000000956.1
S4R778
cishb