Arabidopsis lyrata         E3 adaptor/Cullin RING/BCR/BTB_3-box


※ E3 adaptor/Cullin RING/BCR/BTB_3-box family introduction

    BTB (also known as POZ) was first identified as a conserved motif presented in the Drosophila melanogaster Bric-a-Brac, Tramtrack, Broad complex transcription regulators (1). BTB, Cul3 and RBX1 form a Cul3-based ligase (BCR), which targets substrates for ubiquitin-dependent degradation by the 26S proteasome. As a substrate recognition subunit of Cul3-based ligase, the member of BTB family can bridge the Cul3 to the substrate in a single polypeptide (2,3). Recently, it was observed that a 3-box is responsible for the Cul3-interacting in a variety of BTB proteins including almost all of BTB-Kelch and MATH-BTB proteins (4). Here we defined the BTB_3-box family as the proteins contain both BTB domain and 3-box domain. BTB-containing proteins are highly conserved and participate in diverse biological processes, including transcriptional regulation, ion channel assembly and gating, cytoskeleton dynamics, and targeting proteins for ubiquitination (1).

1. Stogios, P.J., Downs, G.S., Jauhal, J.J., Nandra, S.K. and Prive, G.G. (2005). Sequence and structural analysis of BTB domain proteins. Genome Biol., 6, R82. PMID: 16207353

2. Xu, L., Wei, Y., Reboul, J., Vaglio, P., Shin, T.H., Vidal, M., Elledge, S.J. and Harper, J.W. (2003). BTB proteins are substrate-specific adaptors in an SCF-like modular ubiquitin ligase containing CUL-3. Nature, 425, 316-321. PMID: 13679922

3. Pintard, L., Willems, A. and Peter, M. (2004). Cullin-based ubiquitin ligases: Cul3-BTB complexes join the family. EMBO J., 23, 1681-1687. PMID: 15071497

4. Zhuang, M., Calabrese, M.F., Liu, J., Waddell, M.B., Nourse, A., Hammel, M., Miller, D.J., Walden, H., Duda, D.M., Seyedin, S.N., Hoggard, T., Harper, J. W., White, K. P. and Schulman, B. A.. (2009). Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol. Cell, 36(1): 39-50. PMID: 19818708




There are 14 genes.  Reviewed (0 or Unreviewed (14Download the gene list
StatusiUUCD IDEnsemble Gene IDUniProt AccessionGene Name
IUUC-Aly-005594
scaffold_803004.1
D7MNF7
BT1; ARALYDRAFT_919604
IUUC-Aly-005772
scaffold_602199.1
D7M067
ATBPM5; ARALYDRAFT_910142
IUUC-Aly-006549
scaffold_501153.1
D7LMB5
ATBPM6; ARALYDRAFT_905449
IUUC-Aly-005813
scaffold_402729.1
D7LDR5
ATBPM3; ARALYDRAFT_903228
IUUC-Aly-005780
scaffold_105376.1
D7KN20
ARALYDRAFT_892582
IUUC-Aly-006048
scaffold_102444.1
D7KKU4
ARALYDRAFT_889650
IUUC-Aly-006091
scaffold_100554.1
D7KF71
BT3; ARALYDRAFT_887760
IUUC-Aly-005414
scaffold_100076.1
D7KQ51
ARALYDRAFT_887282
IUUC-Aly-005497
fgenesh2_kg.8__2662__AT5G67480.1
D7MUQ2
BT4; ARALYDRAFT_496846
IUUC-Aly-006540
fgenesh2_kg.7__291__AT4G37610.1
D7MA27
BT5; ARALYDRAFT_490858
IUUC-Aly-005445
fgenesh1_pm.C_scaffold_5000980
D7LRM1
BT2; ARALYDRAFT_323436
IUUC-Aly-006345
fgenesh1_pg.C_scaffold_8000843
D7MM21
ARALYDRAFT_357056
IUUC-Aly-006523
Al_scaffold_0008_1100
D7MM23
ARALYDRAFT_684280
IUUC-Aly-005957
Al_scaffold_0006_39
D7M6G7
ARALYDRAFT_659974