Populus trichocarpa         E3 adaptor/Cullin RING/BCR/BTB_3-box


※ E3 adaptor/Cullin RING/BCR/BTB_3-box family introduction

    BTB (also known as POZ) was first identified as a conserved motif presented in the Drosophila melanogaster Bric-a-Brac, Tramtrack, Broad complex transcription regulators (1). BTB, Cul3 and RBX1 form a Cul3-based ligase (BCR), which targets substrates for ubiquitin-dependent degradation by the 26S proteasome. As a substrate recognition subunit of Cul3-based ligase, the member of BTB family can bridge the Cul3 to the substrate in a single polypeptide (2,3). Recently, it was observed that a 3-box is responsible for the Cul3-interacting in a variety of BTB proteins including almost all of BTB-Kelch and MATH-BTB proteins (4). Here we defined the BTB_3-box family as the proteins contain both BTB domain and 3-box domain. BTB-containing proteins are highly conserved and participate in diverse biological processes, including transcriptional regulation, ion channel assembly and gating, cytoskeleton dynamics, and targeting proteins for ubiquitination (1).

1. Stogios, P.J., Downs, G.S., Jauhal, J.J., Nandra, S.K. and Prive, G.G. (2005). Sequence and structural analysis of BTB domain proteins. Genome Biol., 6, R82. PMID: 16207353

2. Xu, L., Wei, Y., Reboul, J., Vaglio, P., Shin, T.H., Vidal, M., Elledge, S.J. and Harper, J.W. (2003). BTB proteins are substrate-specific adaptors in an SCF-like modular ubiquitin ligase containing CUL-3. Nature, 425, 316-321. PMID: 13679922

3. Pintard, L., Willems, A. and Peter, M. (2004). Cullin-based ubiquitin ligases: Cul3-BTB complexes join the family. EMBO J., 23, 1681-1687. PMID: 15071497

4. Zhuang, M., Calabrese, M.F., Liu, J., Waddell, M.B., Nourse, A., Hammel, M., Miller, D.J., Walden, H., Duda, D.M., Seyedin, S.N., Hoggard, T., Harper, J. W., White, K. P. and Schulman, B. A.. (2009). Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol. Cell, 36(1): 39-50. PMID: 19818708




There are 11 genes.  Reviewed (0 or Unreviewed (11Download the gene list
StatusiUUCD IDEnsemble Gene IDUniProt AccessionGene Name
IUUC-Pop-099638
POPTR_0427s00200
U7E149
XM_002318657.1; POPTR_0427s00200g
IUUC-Pop-100073
POPTR_0017s04240
B9IJ38
POPTRDRAFT_825456; POPTR_0017s04240g
IUUC-Pop-099153
POPTR_0016s13530
B9IGK0
POPTRDRAFT_577085; POPTR_0016s13530g
IUUC-Pop-099694
POPTR_0015s09920
B9IF25
POPTRDRAFT_776193; POPTR_0015s09920g
IUUC-Pop-099980
POPTR_0012s09300
U5FUE2
POPTRDRAFT_823396; POPTR_0012s09300g
IUUC-Pop-099264
POPTR_0009s15830
B9HQF6
POPTR_0009s15830g
IUUC-Pop-099216
POPTR_0008s07420
U5G7M2
POPTR_0008s07420g
IUUC-Pop-098825
POPTR_0008s06000
B9HML7
POPTRDRAFT_765487; POPTR_0008s06000g
IUUC-Pop-099114
POPTR_0004s20530
U5GJL8
POPTR_0004s20530g
IUUC-Pop-099250
POPTR_0001s47270
B9GHH2
POPTRDRAFT_708145; POPTR_0001s47270g
IUUC-Pop-098959
POPTR_0001s18490
U5GUD0
POPTR_0001s18490g