iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Trim9

mRNA Expression - ArrayExpress
Gene Name	Experimental Factor	Factor Value	Experiment Accession	Array Design Accession	Expression	P-value
Trim9	disease_state	normal	E-GEOD-3554	A-AFFY-45	NONDE	0.44810584
Trim9	disease_state	normal	E-MEXP-1444	A-AFFY-45	NONDE	0.48455298
Trim9	disease_state	normal	E-MEXP-1296	A-AFFY-45	NONDE	0.6841505
Trim9	disease_state	normal	E-MEXP-1314	A-AFFY-45	NONDE	0.9998959
Trim9	growth_condition	normal oxygen	E-GEOD-495	A-AFFY-7	NONDE	0.49396005
Trim9	myostatin_genotype	normal	E-GEOD-31839	A-ENST-4	NONDE	1.0
Trim9	disease_state	normal	E-MEXP-3493	A-AFFY-130	NONDE	0.9157202
Trim9	disease_state	normal	E-MEXP-1313	A-AFFY-45	NONDE	0.88816583
Trim9	diet	normal diet	E-GEOD-27999	A-AFFY-45	NONDE	0.88975346
Trim9	growth_condition	normoxia	E-GEOD-3196	A-AFFY-45	NONDE	0.86733663
Trim9	disease_state	normal	E-GEOD-25286	A-AFFY-45	NONDE	0.07088279
Trim9	disease_state	normal	E-MEXP-1673	A-AFFY-45	NONDE	0.99998796
Trim9	disease_state	normal	E-JJRD-1	A-AFFY-45	NONDE	0.999791
Trim9	growth_condition	normoxia	E-GEOD-482	A-AFFY-7	NONDE	0.6773492
Trim9	disease_state	normal	E-MEXP-1623	A-AFFY-45	NONDE	0.08560268
Trim9	growth_condition	normal diet	E-GEOD-4786	A-AFFY-45	NONDE	0.19725749
Trim9	disease_state	normal	E-MEXP-453	A-AFFY-45	NONDE	0.9998431
Trim9	disease_state	normal	E-MEXP-893	A-AFFY-24	NONDE	0.3860994
Trim9	disease_state	normal	E-MEXP-2554	A-AFFY-45	NONDE	0.99998903
Trim9	disease_state	normal	E-MTAB-901	A-AFFY-130	NONDE	0.5603825
Trim9	disease_state	normal	E-GEOD-3583	A-AFFY-45	NONDE	0.60302323
Trim9	disease_state	normal	E-MEXP-835	A-AFFY-45	NONDE	0.27400404
Trim9	growth_condition	normal diet	E-MEXP-1755	A-AFFY-45	NONDE	0.76200014
Trim9	disease_state	normal	E-GEOD-1294	A-AFFY-7	NONDE	0.9999252
Trim9	disease_state	normal	E-GEOD-6078	A-AFFY-45	NONDE	0.97343683
Trim9	disease_state	normal	E-MEXP-1137	A-AFFY-45	NONDE	0.12403113
Trim9	organism_part	tendon	E-GEOD-3486	A-AFFY-24	NONDE	0.52707076
Trim9	organism_part	skin	E-GEOD-3486	A-AFFY-24	NONDE	0.7211786
Trim9	organism_part	cornea	E-GEOD-3486	A-AFFY-24	NONDE	0.6764446
Trim9	organism_part	quadriceps	E-GEOD-6210	A-AFFY-45	NONDE	0.40828434
Trim9	organism_part	liver	E-GEOD-6210	A-AFFY-45	NONDE	0.40828434
Trim9	organism_part	placenta	E-GEOD-4870	A-AFFY-7	NONDE	0.20940971
Trim9	organism_part	whole organism	E-GEOD-4870	A-AFFY-7	NONDE	0.36759728
Trim9	organism_part	heart	E-GEOD-4870	A-AFFY-7	NONDE	0.69662684
Trim9	organism_part	duodenum	E-GEOD-19518	A-AFFY-45	NONDE	0.64332724
Trim9	organism_part	liver	E-GEOD-19518	A-AFFY-45	NONDE	0.64332724
Trim9	organism_part	cerebral cortex	E-GEOD-2161	A-AFFY-45	NONDE	0.10307742
Trim9	organism_part	basal ganglion	E-GEOD-2161	A-AFFY-45	NONDE	0.10307742
Trim9	organism_part	kidney	E-MEXP-565	A-AFFY-45	NONDE	0.116760254
Trim9	organism_part	liver	E-MEXP-565	A-AFFY-45	NONDE	0.116760254
Trim9	differentiation_state	R3	E-GEOD-20391	A-AFFY-45	NONDE	0.78182375
Trim9	differentiation_state	R5	E-GEOD-20391	A-AFFY-45	NONDE	0.69875664
Trim9	differentiation_state	R4	E-GEOD-20391	A-AFFY-45	NONDE	0.7683706
Trim9	organism_part	lymph node	E-GEOD-19401	A-AFFY-45	NONDE	0.56039083
Trim9	organism_part	Peyer's patch	E-GEOD-19401	A-AFFY-45	NONDE	0.56039083
Trim9	organism_part	vas deferens	E-GEOD-22616	A-AFFY-45	NONDE	0.095123686
Trim9	organism_part	epididymis	E-GEOD-22616	A-AFFY-45	NONDE	0.54167074
Trim9	organism_part	spleen	E-MEXP-1504	A-AFFY-45	NONDE	0.32992837
Trim9	organism_part	kidney	E-MEXP-1504	A-AFFY-45	NONDE	0.53380436
Trim9	organism_part	lung	E-MEXP-1504	A-AFFY-45	NONDE	0.2026731
Trim9	cell_type	Leydig cell	E-GEOD-640	A-AFFY-7	NONDE	0.970007
Trim9	organism_part	bed nucleus of the stria terminalis	E-GEOD-5763	A-AFFY-45	NONDE	0.08793063
Trim9	organism_part	nucleus accumbens	E-GEOD-5763	A-AFFY-45	NONDE	0.29555562
Trim9	organism_part	left ventricle	E-GEOD-4648	A-AFFY-7	NONDE	0.23137611
Trim9	organism_part	interventricular septum	E-GEOD-4648	A-AFFY-7	NONDE	0.8342708
Trim9	organism_part	ileum	E-GEOD-849	A-AFFY-7	NONDE	0.8674157
Trim9	organism_part	duodenum	E-GEOD-849	A-AFFY-7	NONDE	0.42189503
Trim9	organism_part	colon	E-GEOD-849	A-AFFY-7	NONDE	0.9087043
Trim9	organism_part	jejunum	E-GEOD-849	A-AFFY-7	NONDE	0.4647816
Trim9	organism_part	whole organism	E-GEOD-6963	A-AFFY-45	NONDE	0.24575825
Trim9	organism_part	ureter	E-GEOD-6963	A-AFFY-45	NONDE	0.24575825
Trim9	cell_type	myocardium	E-MEXP-1405	A-AFFY-45	NONDE	0.26666924
Trim9	organism_part	gastrocnemius muscle	E-GEOD-4463	A-AFFY-24	NONDE	0.05748838
Trim9	organism_part	extraocular muscle	E-GEOD-4463	A-AFFY-24	NONDE	0.05748838
Trim9	organism_part	atrial chamber	E-GEOD-1479	A-AFFY-45	NONDE	0.071315356
Trim9	organism_part	heart	E-GEOD-1479	A-AFFY-45	NONDE	0.63294625
Trim9	organism_part	bladder	E-GEOD-6223	A-AFFY-45	NONDE	0.73735946
Trim9	organism_part	urethra	E-GEOD-6223	A-AFFY-45	NONDE	0.42630872
Trim9	organism_part	lacrimal gland	E-GEOD-4953	A-AFFY-7	NONDE	0.7905502
Trim9	organism_part	pancreas	E-GEOD-4953	A-AFFY-7	NONDE	0.4971944
Trim9	organism_part	submandibular gland	E-GEOD-4953	A-AFFY-7	NONDE	0.6796071
Trim9	organism_part	medial prefrontal cortex	E-GEOD-22131	A-ENST-4	NONDE	0.10402485
Trim9	organism_part	vertebra	E-GEOD-18647	A-AFFY-45	NONDE	0.8676599
Trim9	organism_part	forelimb	E-GEOD-2560	A-AFFY-24	NONDE	0.97218794
Trim9	organism_part	hindlimb	E-GEOD-2560	A-AFFY-24	NONDE	0.97218794
Trim9	cell_type	interstitial cell	E-GEOD-829	A-AFFY-7	NONDE	0.9831007
Trim9	organism_part	testis	E-GEOD-19532	A-AFFY-24	NONDE	0.15874708
Trim9	organism_part	pituitary gland	E-GEOD-10246	A-AFFY-45	NONDE	0.053882413
Trim9	organism_part	vertebra	E-GEOD-18649	A-AFFY-45	NONDE	0.81795925
Trim9	organism_part	whole organism	E-GEOD-20575	A-AFFY-45	NONDE	0.85613173
Trim9	organism_part	testis	E-MEXP-1518	A-AFFY-45	NONDE	0.3177454
Trim9	organism_part	spleen	E-MEXP-1518	A-AFFY-45	NONDE	0.46276817
Trim9	organism_part	placenta	E-MEXP-1518	A-AFFY-45	NONDE	0.8494447
Trim9	organism_part	lung	E-MEXP-1518	A-AFFY-45	NONDE	0.81742066
Trim9	organism_part	thymus	E-MEXP-1518	A-AFFY-45	NONDE	0.07215773
Trim9	organism_part	submaxillary gland	E-MEXP-1518	A-AFFY-45	NONDE	0.437108
Trim9	organism_part	skeletal muscle	E-MEXP-1518	A-AFFY-45	NONDE	0.63503706
Trim9	organism_part	ovary	E-MEXP-1518	A-AFFY-45	NONDE	0.9425196
Trim9	organism_part	kidney	E-MEXP-1518	A-AFFY-45	NONDE	0.56507427
Trim9	organism_part	lymph node	E-MEXP-1518	A-AFFY-45	NONDE	0.71596545
Trim9	organism_part	stomach	E-MEXP-1518	A-AFFY-45	NONDE	0.79988796
Trim9	organism_part	heart	E-MEXP-1518	A-AFFY-45	NONDE	0.7136622
Trim9	organism_part	eyeball	E-MEXP-1518	A-AFFY-45	NONDE	0.09670862
Trim9	organism_part	uterine cervix	E-MEXP-1518	A-AFFY-45	NONDE	0.7215915
Trim9	organism_part	liver	E-MEXP-1518	A-AFFY-45	NONDE	0.9423314
Trim9	organism_part	bone	E-MEXP-495	A-AFFY-24	NONDE	0.4359461
Trim9	organism_part	intestine	E-MEXP-495	A-AFFY-24	NONDE	0.4359461
Trim9	organism_part	liver	E-GEOD-22506	A-AFFY-45	NONDE	0.06742321
Trim9	organism_part	spleen	E-MEXP-1802	A-AFFY-45	NONDE	0.9999946
Trim9	organism_part	lung	E-MEXP-1802	A-AFFY-45	NONDE	0.9999946
Trim9	organism_part	limbus	E-GEOD-4098	A-AFFY-45	NONDE	0.9998487
Trim9	organism_part	cornea	E-GEOD-4098	A-AFFY-45	NONDE	0.9998487
Trim9	organism_part	retina	E-GEOD-29752	A-ENST-4	NONDE	0.728134
Trim9	organism_part	bladder	E-GEOD-6466	A-AFFY-45	NONDE	0.37003002
Trim9	organism_part	whole organism	E-GEOD-6466	A-AFFY-45	NONDE	0.37003002
Trim9	organism_part	testis	E-TABM-130	A-AFFY-45	NONDE	0.9993516
Trim9	material_type	organism_part	E-TABM-130	A-AFFY-45	NONDE	0.61700505
Trim9	organism_part	seminiferous tubule	E-TABM-130	A-AFFY-45	NONDE	0.9993516
Trim9	disease_state	tumor	E-GEOD-21902	A-AFFY-45	UP	0.043682203
Trim9	disease_state	neuroblastoma	E-GEOD-10246	A-AFFY-45	UP	7.319854E-5
Trim9	disease_state	synovial sarcoma	E-GEOD-6461	A-AFFY-45	UP	0.0073142285
Trim9	disease_state	normal	E-GEOD-21902	A-AFFY-45	DOWN	0.043682203
Trim9	disease_state	normal	E-GEOD-6461	A-AFFY-45	DOWN	0.0073142285
Trim9	organism_part	skeletal muscle	E-GEOD-27948	A-AFFY-45	UP	0.026989233
Trim9	organism_part	kidney	E-GEOD-27948	A-AFFY-45	UP	1.1411144E-8
Trim9	organism_part	heart	E-GEOD-27948	A-AFFY-45	DOWN	1.4480977E-8
Trim9	organism_part	liver	E-GEOD-27948	A-AFFY-45	DOWN	0.0022793857
Trim9	organism_part	spleen	E-TABM-865	A-AFFY-45	DOWN	0.0020511025
Trim9	organism_part	liver	E-TABM-865	A-AFFY-45	UP	0.0020511025
Trim9	organism_part	amygdala	E-GEOD-4034	A-AFFY-45	DOWN	5.6971505E-8
Trim9	organism_part	hippocampus	E-GEOD-4034	A-AFFY-45	UP	5.6971505E-8
Trim9	organism_part	spleen	E-MTAB-599	A-ENST-4	DOWN	2.3806989E-34
Trim9	organism_part	lung	E-MTAB-599	A-ENST-4	DOWN	2.3806989E-34
Trim9	organism_part	thymus	E-MTAB-599	A-ENST-4	DOWN	2.3806989E-34
Trim9	organism_part	heart	E-MTAB-599	A-ENST-4	DOWN	2.3806989E-34
Trim9	organism_part	hippocampus	E-MTAB-599	A-ENST-4	UP	0.0
Trim9	organism_part	liver	E-MTAB-599	A-ENST-4	DOWN	2.3806989E-34
Trim9	organism_part	dorsal root ganglion	E-GEOD-2917	A-AFFY-45	UP	4.6147914E-5
Trim9	organism_part	nodose ganglion	E-GEOD-2917	A-AFFY-45	DOWN	4.6147914E-5
Trim9	organism_part	liver	E-GEOD-4870	A-AFFY-7	DOWN	0.04415347
Trim9	organism_part	brain	E-GEOD-4870	A-AFFY-24	UP	0.018915866
Trim9	organism_part	kidney	E-TABM-877	A-AFFY-45	DOWN	1.7576721E-7
Trim9	organism_part	cerebellum	E-TABM-877	A-AFFY-45	UP	1.4227485E-12
Trim9	organism_part	muscle	E-TABM-877	A-AFFY-45	DOWN	1.0379966E-5
Trim9	organism_part	lung	E-TABM-877	A-AFFY-45	DOWN	1.04757305E-7
Trim9	organism_part	pancreatic islet	E-TABM-877	A-AFFY-45	UP	3.9404167E-6
Trim9	organism_part	liver	E-TABM-877	A-AFFY-45	DOWN	3.852535E-6
Trim9	organism_part	submandibular salivary gland	E-TABM-877	A-AFFY-45	DOWN	1.2590094E-6
Trim9	organism_part	periaqueductal gray	E-GEOD-4734	A-AFFY-45	DOWN	4.9618126E-7
Trim9	organism_part	hypothalamus	E-GEOD-4734	A-AFFY-45	DOWN	5.5874312E-5
Trim9	organism_part	bed nucleus of the stria terminalis	E-GEOD-4734	A-AFFY-45	UP	4.3668466E-16
Trim9	organism_part	pituitary gland	E-GEOD-4734	A-AFFY-45	DOWN	7.493327E-29
Trim9	organism_part	hippocampus	E-GEOD-4734	A-AFFY-45	UP	2.3021729E-32
Trim9	organism_part	kidney	E-GEOD-15129	A-AFFY-45	DOWN	1.8E-44
Trim9	organism_part	heart	E-GEOD-15129	A-AFFY-45	DOWN	5.3E-44
Trim9	organism_part	liver	E-GEOD-15129	A-AFFY-45	DOWN	4.71E-43
Trim9	organism_part	brain	E-GEOD-15129	A-AFFY-45	UP	0.0
Trim9	organism_part	cerebral cortex	E-GEOD-6527	A-AFFY-24	UP	5.874779E-10
Trim9	organism_part	hippocampus	E-GEOD-6527	A-AFFY-24	DOWN	5.874779E-10
Trim9	organism_part	liver	E-MEXP-1504	A-AFFY-45	UP	0.019994589
Trim9	organism_part	dorsal striatum	E-GEOD-5763	A-AFFY-45	UP	0.040920183
Trim9	organism_part	both ventricles	E-GEOD-1479	A-AFFY-45	DOWN	0.015101769
Trim9	organism_part	striatum	E-GEOD-19534	A-AFFY-45	DOWN	3.2632717E-5
Trim9	organism_part	cerebellum	E-GEOD-19534	A-AFFY-45	UP	3.2632717E-5
Trim9	organism_part	testis	E-GEOD-6916	A-AFFY-45	UP	0.04727432
Trim9	organism_part	ovary	E-GEOD-6916	A-AFFY-45	DOWN	0.04727432
Trim9	organism_part	whole organism	E-GEOD-6223	A-AFFY-45	UP	0.04439604
Trim9	organism_part	epithelium	E-GEOD-6383	A-AFFY-45	DOWN	0.023111846
Trim9	organism_part	striatum	E-GEOD-20547	A-AFFY-45	UP	2.744247E-6
Trim9	organism_part	brainstem	E-GEOD-20547	A-AFFY-45	DOWN	9.3534815E-8
Trim9	organism_part	cerebellum	E-GEOD-20547	A-AFFY-45	UP	0.0040774494
Trim9	organism_part	amygdala	E-GEOD-4035	A-AFFY-45	UP	0.0035436351
Trim9	organism_part	hippocampus	E-GEOD-4035	A-AFFY-45	DOWN	0.0035436351
Trim9	organism_part	whole brain	E-GEOD-22131	A-ENST-4	UP	0.01546227
Trim9	organism_part	preoptic area	E-GEOD-22131	A-ENST-4	UP	0.01385551
Trim9	organism_part	spleen	E-GEOD-21927	A-AFFY-45	DOWN	3.48609E-4
Trim9	organism_part	bone marrow	E-GEOD-21927	A-AFFY-45	UP	7.381752E-5
Trim9	organism_part	small intestine	E-GEOD-10246	A-AFFY-45	DOWN	6.573484E-9
Trim9	organism_part	adrenal gland	E-GEOD-10246	A-AFFY-45	DOWN	4.030406E-6
Trim9	organism_part	placenta	E-GEOD-10246	A-AFFY-45	DOWN	1.7936137E-10
Trim9	organism_part	iris	E-GEOD-10246	A-AFFY-45	UP	2.772841E-26
Trim9	organism_part	dorsal striatum	E-GEOD-10246	A-AFFY-45	UP	5.8647866E-36
Trim9	organism_part	lung	E-GEOD-10246	A-AFFY-45	DOWN	1.370492E-10
Trim9	organism_part	nucleus accumbens	E-GEOD-10246	A-AFFY-45	UP	5.7231356E-22
Trim9	organism_part	pancreas	E-GEOD-10246	A-AFFY-45	DOWN	5.0258075E-7
Trim9	organism_part	salivary gland	E-GEOD-10246	A-AFFY-45	DOWN	1.0955429E-8
Trim9	organism_part	amygdala	E-GEOD-10246	A-AFFY-45	UP	6.5293284E-34
Trim9	organism_part	dorsal root ganglion	E-GEOD-10246	A-AFFY-45	UP	6.4684577E-15
Trim9	organism_part	brown adipose tissue	E-GEOD-10246	A-AFFY-45	DOWN	1.0257902E-10
Trim9	organism_part	bone	E-GEOD-10246	A-AFFY-45	DOWN	1.1137833E-10
Trim9	organism_part	testis	E-GEOD-10246	A-AFFY-45	DOWN	3.2649112E-8
Trim9	organism_part	spleen	E-GEOD-10246	A-AFFY-45	DOWN	1.6705217E-8
Trim9	organism_part	hypothalamus	E-GEOD-10246	A-AFFY-45	UP	2.6366317E-25
Trim9	organism_part	white adipose tissue	E-GEOD-10246	A-AFFY-45	DOWN	6.1366995E-7
Trim9	organism_part	retina	E-GEOD-10246	A-AFFY-45	UP	8.6593605E-36
Trim9	organism_part	lacrimal gland	E-GEOD-10246	A-AFFY-45	DOWN	3.2709468E-7
Trim9	organism_part	bladder	E-GEOD-10246	A-AFFY-45	DOWN	7.640673E-10
Trim9	organism_part	cerebellum	E-GEOD-10246	A-AFFY-45	UP	3.5197257E-29
Trim9	organism_part	large intestine	E-GEOD-10246	A-AFFY-45	DOWN	1.9492872E-9
Trim9	organism_part	uterus	E-GEOD-10246	A-AFFY-45	DOWN	1.0962979E-9
Trim9	organism_part	cornea	E-GEOD-10246	A-AFFY-45	DOWN	0.003682393
Trim9	organism_part	umbilical cord	E-GEOD-10246	A-AFFY-45	DOWN	4.8158146E-8
Trim9	organism_part	olfactory bulb	E-GEOD-10246	A-AFFY-45	UP	7.403E-41
Trim9	organism_part	skeletal muscle	E-GEOD-10246	A-AFFY-45	DOWN	4.2304724E-9
Trim9	organism_part	prostate	E-GEOD-10246	A-AFFY-45	DOWN	3.909252E-9
Trim9	organism_part	ovary	E-GEOD-10246	A-AFFY-45	DOWN	3.9650505E-8
Trim9	organism_part	kidney	E-GEOD-10246	A-AFFY-45	DOWN	1.4417213E-10
Trim9	organism_part	lymph node	E-GEOD-10246	A-AFFY-45	DOWN	3.7048103E-10
Trim9	organism_part	cerebral cortex	E-GEOD-10246	A-AFFY-45	UP	0.0
Trim9	organism_part	bone marrow	E-GEOD-10246	A-AFFY-45	DOWN	1.845585E-27
Trim9	organism_part	stomach	E-GEOD-10246	A-AFFY-45	DOWN	4.8411428E-11
Trim9	organism_part	heart	E-GEOD-10246	A-AFFY-45	DOWN	4.769237E-10
Trim9	organism_part	epidermis	E-GEOD-10246	A-AFFY-45	DOWN	1.0164132E-9
Trim9	organism_part	spinal cord	E-GEOD-10246	A-AFFY-45	UP	2.305864E-19
Trim9	organism_part	hippocampus	E-GEOD-10246	A-AFFY-45	UP	3.5978275E-30
Trim9	organism_part	liver	E-GEOD-10246	A-AFFY-45	DOWN	7.261943E-8
Trim9	organism_part	dorsal root ganglion	E-GEOD-5425	A-AFFY-45	DOWN	0.0030361433
Trim9	organism_part	spinal cord	E-GEOD-5425	A-AFFY-45	UP	0.0030361433
Trim9	organism_part	frontal cortex	E-GEOD-20160	A-AFFY-45	UP	2.9650005E-22
Trim9	organism_part	nucleus accumbens	E-GEOD-20160	A-AFFY-45	DOWN	2.9650005E-22
Trim9	organism_part	skeletal muscle	E-TABM-1039	A-AFFY-45	UP	0.01976776
Trim9	organism_part	liver	E-TABM-1039	A-AFFY-45	UP	1.05453284E-4
Trim9	organism_part	brain	E-MEXP-1518	A-AFFY-45	UP	0.01981295
Trim9	organism_part	liver	E-GEOD-33381	A-AFFY-130	DOWN	0.008255323
Trim9	organism_part	skeletal muscle	E-MEXP-748	A-AFFY-45	DOWN	4.857456E-14
Trim9	organism_part	hypothalamus	E-MEXP-748	A-AFFY-45	UP	9.9683145E-26
Trim9	organism_part	colon	E-MEXP-748	A-AFFY-45	DOWN	1.3660459E-15
Trim9	organism_part	liver	E-MEXP-748	A-AFFY-45	DOWN	1.4570392E-15
Trim9	organism_part	lung	E-GEOD-18534	A-AFFY-45	DOWN	0.0057973503
Trim9	organism_part	hippocampus	E-MEXP-420	A-AFFY-45	UP	2.9936612E-6
Trim9	cell_type	Sertoli cell	E-TABM-130	A-AFFY-45	DOWN	0.020572038