DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome MAP1LC3A 3'UTR 980f950691 BA062239 NM_032514 chr20:32611364-32611810:+ MAP1LC3A 3'UTR ea9dd14aca BA062240 NM_032514 chr20:32611364-32611810:+ MAP1LC3A 3'UTR 9698e7f3e4 BA062241 NM_032514 chr20:32611364-32611808:+ MAP1LC3A 5'UTR 980f950691 CA096387 NM_032514 chr20:32610180-32610333:+ MAP1LC3A 5'UTR ea9dd14aca CA096388 NM_032514 chr20:32598353-32601442:+ MAP1LC3A 5'UTR 9698e7f3e4 CA096389 NM_032514 chr20:32609573-32610333:+

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0059969 chr20 33147150 33148149 + hsa_circ_0059968 chr20 33147011 33148149 +

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-MAP1LC3A-antisense.1 NM_181509Tchr20:33148035-33148099 expressed MAP1LC3A 84557 protein-coding - not_available hsa-circ-MAP1LC3A.3 NM_181509Tchr20:33147011-33148149 none MAP1LC3A 84557 protein-coding + hsa_circ_0059968 hsa-circ-MAP1LC3A.4 NM_181509Tchr20:33147150-33148149 none MAP1LC3A 84557 protein-coding + hsa_circ_0059969 hsa-circ-MAP1LC3A.5 NM_032514Tchr20:33147011-33147257 expressed MAP1LC3A 84557 protein-coding + hsa_circ_0115002

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT018831 hsa-miR-335-5p Homo sapiens MAP1LC3A 84557 Homo sapiens Microarray Functional MTI (Weak) 18185580

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004562 hsa-miR-196a* 84557 MAP1LC3A gaGUCCGUCAAAGAACA-ACGGc :|||| | | ||| |||| uuUAGGCCCCUGCCUGUCUGCCc 2 21 269 291 [hg19:20:33147971-33147993:+] 0.6555 120 0 -14.86 -0.6164 MIMAT0004597 hsa-miR-140-3p 84557 MAP1LC3A ggCACCA-AGA-UGGGACACCAu ||||| | | : :||||||| acGUGGUGUAUGGAUCUGUGGUc 2 20 383 405 [hg19:20:33148085-33148107:+] 0.6825 153 7 -26.64 -0.6365 MIMAT0004694 hsa-miR-342-5p 84557 MAP1LC3A aguuagUGUCUA---UCGUGGGGa :||| | |||||||| uggggaGCAGCUCCCAGCACCCCu 2 16 225 248 [hg19:20:33147927-33147950:+] 0.6555 146 7 -25.23 -0.2354 MIMAT0004748 hsa-miR-423-5p 84557 MAP1LC3A uuuCAGAGCGAG-AGACGGGGAGu |||| || | |||||||||| ccuGUCU-GCCCAUCUGCCCCUCa 2 21 281 303 [hg19:20:33147983-33148005:+] 0.6555 169 7 -30.71 -0.8948 MIMAT0004762 hsa-miR-486-3p 84557 MAP1LC3A uaGGACAUGAC---UCGACGGGGc ||||| ||| | ||||||| ugCCUGU-CUGCCCAUCUGCCCCu 2 20 279 301 [hg19:20:33147981-33148003:+] 0.6555 156 7 -25.70 -0.5064 MIMAT0004762 hsa-miR-486-3p 84557 MAP1LC3A uaggacAUGACUCGACGGGGc |||| ||||||| cccaccUACU---CUGCCCCu 2 16 140 157 [hg19:20:33147842-33147859:+] 0.6231 143 7 -18.26 -0.2724 MIMAT0003222 hsa-miR-558 84557 MAP1LC3A uaaaACCAUGUCGUCGAGu ||| : |||||||| agggUGG-GGAGCAGCUCc 2 16 221 238 [hg19:20:33147923-33147940:+] 0.6555 149 7 -18.24 -0.1042 MIMAT0003240 hsa-miR-575 84557 MAP1LC3A cgAGGAC--AGG--UUGAC-CGAg ||||| ||| ||||| ||| gcUCCUGGUUCCUGAACUGAGCUg 2 18 62 85 [hg19:20:33147764-33147787:+] 0.5865 123 0 -22.80 -0.1115 MIMAT0003276 hsa-miR-608 84557 MAP1LC3A ugccucGACAGGGUUGUGGUGGGGa ||| || :| ||||||| caccgcCUGGACCUGC-CCACCCCu 2 20 322 345 [hg19:20:33148024-33148047:+] 0.6555 153 7 -27.98 -0.1957 MIMAT0003326 hsa-miR-663 84557 MAP1LC3A cgcCAGGGCGCCGCGGGGCGGa | ||| :||| ||||||| acuGGCCCCUGGCUCCCCGCCc 2 20 351 372 [hg19:20:33148053-33148074:+] 0.6690 167 7 -35.51 -0.1951 MIMAT0003330 hsa-miR-654-5p 84557 MAP1LC3A cguguacaaGACGCCGGGUGGu || | ||||||| cacccgaggCU-CUGCCCACCg 2 14 306 326 [hg19:20:33148008-33148028:+] 0.6555 143 7 -20.58 -0.2327 MIMAT0003330 hsa-miR-654-5p 84557 MAP1LC3A cguguacaagacGCCGGGUGGu | ||||||| caccgccuggacCUGCCCACCc 2 11 322 343 [hg19:20:33148024-33148045:+] 0.6555 142 7 -17.91 -0.3536 MIMAT0010364 hsa-miR-761 84557 MAP1LC3A acacagucaaaGU-GGGACGACg || |||||||| gcagcucccagCACCCCUGCUGu 2 12 231 253 [hg19:20:33147933-33147955:+] 0.6555 146 7 -21.03 -0.1691 MIMAT0004915 hsa-miR-220c 84557 MAP1LC3A ucagaAGUGUUGUCGGGAC-ACa || ||:|| ||||| || gcagcUCCCAGCACCCCUGCUGu 2 18 231 253 [hg19:20:33147933-33147955:+] 0.6555 129 0 -20.11 -0.1769 MIMAT0004920 hsa-miR-541 84557 MAP1LC3A ucaGGUCUAAGACACGGGUGGu || || || |||||||| ccaCCCGAGGCUCUGCCCACCg 2 20 305 326 [hg19:20:33148007-33148028:+] 0.6555 163 7 -26.55 -0.2348 MIMAT0004920 hsa-miR-541 84557 MAP1LC3A ucaggucuaagacACGGGUGGu |||||||| caccgccuggaccUGCCCACCc 2 10 322 343 [hg19:20:33148024-33148045:+] 0.6555 145 7 -20.75 -0.3565 MIMAT0004952 hsa-miR-665 84557 MAP1LC3A uccccgGAGU-CGGA-GGACCa |||| |||| ||||| agauugCUCAGGCCUGCCUGGc 2 15 426 447 [hg19:20:33148128-33148149:+] 0.6704 125 0 -22.94 -0.1704 MIMAT0004970 hsa-miR-920 84557 MAP1LC3A augacgaaggUGUCGAGGGg :|||||||| aggguggggaGCAGCUCCCa 2 11 221 240 [hg19:20:33147923-33147942:+] 0.6555 146 7 -18.94 -0.1312 MIMAT0004983 hsa-miR-940 84557 MAP1LC3A ccccucgccCCCGGGACGGAa || |||||||| uuuuuuuuaGGCCCCUGCCUg 2 13 264 284 [hg19:20:33147966-33147986:+] 0.6555 152 7 -19.53 -0.2971 MIMAT0004983 hsa-miR-940 84557 MAP1LC3A ccccucgccccCGGGACGGAa | ||||||| aagauugcucaGGCCUGCCUg 2 11 425 445 [hg19:20:33148127-33148147:+] 0.6704 142 7 -15.99 -0.1039 MIMAT0005577 hsa-miR-1226 84557 MAP1LC3A gauccCUUGUGUCCCGACCACu |::::| |||||||| ccucuGGGUGC-UGGCUGGUGg 2 18 192 212 [hg19:20:33147894-33147914:+] 0.6393 147 7 -24.47 -0.2114 MIMAT0005871 hsa-miR-1207-5p 84557 MAP1LC3A ggGGAGGGUCGGAGGGACGGu ::|:::|| | ||||||| uuUUUUUUAGGC-CCCUGCCu 2 20 264 283 [hg19:20:33147966-33147985:+] 0.6555 153 7 -24.50 -0.3833 MIMAT0005911 hsa-miR-1260 84557 MAP1LC3A acCACCGUC-UCCACCCUa ||| ::| ||||||| ggGUGCUGGCUGGUGGGAu 2 17 197 215 [hg19:20:33147899-33147917:+] 0.6393 147 7 -23.39 -0.1745 MIMAT0005956 hsa-miR-1324 84557 MAP1LC3A cuuucacguaucuuaaGACAGACc ||||||| uuuuuuaggccccugcCUGUCUGc 2 9 266 289 [hg19:20:33147968-33147991:+] 0.6555 140 7 -11.79 -0.1420 MIMAT0006767 hsa-miR-1827 84557 MAP1LC3A uaAGUU-AGAUGACGGAGu | || | :||||||| ccUGAACUGAGCUGCCUCu 2 17 72 90 [hg19:20:33147774-33147792:+] 0.5865 143 7 -14.40 -0.1812 MIMAT0007881 hsa-miR-1908 84557 MAP1LC3A cuGGUUAGCGGC--AGGGGCGGc |::: | |:| |||||||| gaCUGGCCCCUGGCUCCCCGCCc 2 20 350 372 [hg19:20:33148052-33148074:+] 0.6690 150 7 -25.38 -0.1969 MIMAT0007883 hsa-miR-1909 84557 MAP1LC3A gccacUCGUGGGCC--GGGGACGc ||| ||| | ||||||| ggagcAGCUCCCAGCACCCCUGCu 2 18 228 251 [hg19:20:33147930-33147953:+] 0.6555 156 7 -25.84 -0.3566 MIMAT0007883 hsa-miR-1909 84557 MAP1LC3A gccacucgugggCCGGGGACGc ||||||||| aucuuuuuuuuaGGCCCCUGCc 2 11 261 282 [hg19:20:33147963-33147984:+] 0.6555 150 7 -23.43 -0.3862 MIMAT0007887 hsa-miR-1912 84557 MAP1LC3A aaGUGUGACGUA-CGAGAC-CCAu |::: ||:|| | |||| ||| caCGUGGUGUAUGGAUCUGUGGUc 2 21 382 405 [hg19:20:33148084-33148107:+] 0.6825 123 0 -21.24 -0.7033 MIMAT0007892 hsa-miR-1915 84557 MAP1LC3A gggcggcgcagcGGGACCCc ||||||| caccuacucugcCCCUGGGu 2 9 142 161 [hg19:20:33147844-33147863:+] 0.6231 140 7 -21.51 -0.1063 MIMAT0009447 hsa-miR-1972 84557 MAP1LC3A acucGGUGACACGGACC-GGACu |||| |||||| |||| cugcCCAC--CGCCUGGACCUGc 2 19 317 337 [hg19:20:33148019-33148039:+] 0.6555 123 0 -24.40 -0.1575 MIMAT0011775 hsa-miR-2276 84557 MAP1LC3A ggAGCGGAGACUGUGA-ACGUCu | |:| :|| | || ||||| ugUGGUCAUUGUCCCUCUGCAGa 2 21 399 421 [hg19:20:33148101-33148123:+] 0.6825 124 0 -14.81 -0.9597 MIMAT0014989 hsa-miR-3126-5p 84557 MAP1LC3A acgaAGACC-GUAGACAGGGAGu | ||| ||| |||||||| gaucUGUGGUCAU-UGUCCCUCu 2 19 395 416 [hg19:20:33148097-33148118:+] 0.6825 159 7 -22.73 -0.8222 MIMAT0014989 hsa-miR-3126-5p 84557 MAP1LC3A acgAAGACCGUAGACAGGGAGu | :| | :| |||||||| ucgUGUUAGGGU-UGUCCCUCu 2 20 176 196 [hg19:20:33147878-33147898:+] 0.6231 149 7 -20.09 -0.1971 MIMAT0015007 hsa-miR-3139 84557 MAP1LC3A uuGUCCGUAGAC----AACUCGAGGAu ||||| ||| |||||||| guCAGGC-CCUGCCCAGAGAGCUCCUg 2 22 43 68 [hg19:20:33147745-33147770:+] 0.5550 146 7 -26.25 -0.1078 MIMAT0015007 hsa-miR-3139 84557 MAP1LC3A uuGUCCGUAGAC--AACUCGA-GGAu | ||: ||| |||||| ||| ucCUGGUUCCUGAACUGAGCUGCCUc 2 22 64 89 [hg19:20:33147766-33147791:+] 0.5865 120 0 -19.34 -0.3001 MIMAT0015040 hsa-miR-3166 84557 MAP1LC3A auCCGGUCAUCCGUAACAGACGc |||| | || ||||||| uaGGCCCCU--GC-CUGUCUGCc 2 22 271 290 [hg19:20:33147973-33147992:+] 0.6555 144 7 -18.67 -0.2426 MIMAT0015041 hsa-miR-1260b 84557 MAP1LC3A uaCCACCGUC-ACCACCCUa |||| ::| |||||||| ugGGUGCUGGCUGGUGGGAu 2 18 196 215 [hg19:20:33147898-33147917:+] 0.6393 160 7 -25.72 -0.1745 MIMAT0015058 hsa-miR-3180-3p 84557 MAP1LC3A ccgGAGGCCUUCGAGGCGGGGu | || |: | ||||||| uggCCCCUGGCUCCCCGCCCCu 2 20 353 374 [hg19:20:33148055-33148076:+] 0.6690 151 7 -31.65 -0.1625 MIMAT0015064 hsa-miR-3184 84557 MAP1LC3A uuuucgagccagacucCGGGGAGu ||||||| gccugucugcccaucuGCCCCUCa 2 9 280 303 [hg19:20:33147982-33148005:+] 0.6555 140 7 -22.79 -0.8948 MIMAT0015378 hsa-miR-3065-3p 84557 MAP1LC3A gagguuguuauAGGACCACGACu ||: ||||||| aggguugucccUCUGGGUGCUGg 2 13 183 205 [hg19:20:33147885-33147907:+] 0.6231 148 7 -21.50 -0.1077 MIMAT0015080 hsa-miR-3196 84557 MAP1LC3A cuCCGGGGAC-----GGCGGGGc |||||||| ||||||| cuGGCCCCUGGCUCCCCGCCCCu 2 17 352 374 [hg19:20:33148054-33148076:+] 0.6690 155 7 -33.65 -0.1594 MIMAT0016853 hsa-miR-4300 84557 MAP1LC3A cuuCAUCAGGUCGAGGGu | :| |||||||| gguGGGGAGCAGCUCCCa 2 16 223 240 [hg19:20:33147925-33147942:+] 0.6555 147 7 -22.68 -0.1299 MIMAT0016910 hsa-miR-4278 84557 MAP1LC3A guucCCGU---UUGGGGGAUc |||| : ||||||| ggcaGGCAUGUGCCCCCCUAg 2 15 105 125 [hg19:20:33147807-33147827:+] 0.6231 141 7 -23.15 -0.1037 MIMAT0016910 hsa-miR-4278 84557 MAP1LC3A guUCCCGU--UUGGG-GGAUc |||||| ||||| |||| agAGGGCACCAACCCACCUAc 2 17 128 148 [hg19:20:33147830-33147850:+] 0.6231 131 0 -23.68 -0.2269 MIMAT0000085 hsa-miR-28-5p 84557 MAP1LC3A gaguuaucuGACACUCGAGGAa | | |||||||| ggcccugccCAGAGAGCUCCUg 2 14 47 68 [hg19:20:33147749-33147770:+] 0.5550 149 7 -15.91 -0.1067 MIMAT0000271 hsa-miR-214 84557 MAP1LC3A ugacggacagacacGGACGACa ||||||| cagcucccagcaccCCUGCUGu 2 9 232 253 [hg19:20:33147934-33147955:+] 0.6555 140 7 -16.70 -0.1723 MIMAT0004693 hsa-miR-330-5p 84557 MAP1LC3A cggAUUCUGUGUCCGGGUCUCu | ||:| | |||||||| cggUCAGGC-CCUGCCCAGAGa 2 20 41 61 [hg19:20:33147743-33147763:+] 0.5550 153 7 -26.37 -0.1530 MIMAT0000756 hsa-miR-326 84557 MAP1LC3A gaccUCCUUCCCGGGUCUCc ||| |||||||| ggucAGGCCCUGCCCAGAGa 2 17 42 61 [hg19:20:33147744-33147763:+] 0.5550 148 7 -19.38 -0.1530 MIMAT0003393 hsa-miR-425 84557 MAP1LC3A aguUGC-CCUCA---CUAG-CA-CAGUAa ||| || || |||| || ||||| uccACGUGGUGUAUGGAUCUGUGGUCAUu 2 21 380 408 [hg19:20:33148082-33148110:+] 0.6825 121 0 -19.85 -0.3650 MIMAT0003164 hsa-miR-544 84557 MAP1LC3A cuugaacgauuuuuACGUCUUa ||||||| ggucauugucccucUGCAGAAu 2 9 402 423 [hg19:20:33148104-33148125:+] 0.6825 140 7 -10.98 -0.6702 MIMAT0004926 hsa-miR-708 84557 MAP1LC3A gggucgaucuaaCAUUCGAGGAa | :||||||| aggcccugcccaGAGAGCUCCUg 2 12 46 68 [hg19:20:33147748-33147770:+] 0.5550 143 7 -21.48 -0.1089 MIMAT0004953 hsa-miR-873 84557 MAP1LC3A ucCUCU-GAGUGUUCAAGGACg |||| ||| | :||||||| caGAGAGCUC-CUGGUUCCUGa 2 20 56 76 [hg19:20:33147758-33147778:+] 0.5865 160 7 -22.93 -0.2119

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G049167 MAP1LC3A Homo sapiens 84557 25517751 231 253 R69530; HS$MAP1LC3A_01; Binding factors: hsa-miR-214-3p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile MAP1LC3A hsa-miR-28-5p beg:57 end:68 pic:3' GAGTTATCTGACACTCGAGGAA 5'& |||||||| &5' -------------GAGCTCCT- 3' MAP1LC3A hiv1-miR-TAR-5p beg:44 end:62 pic:3' AGTCTAGACCA-GATTGGTCTCTCT 5'& || ||. |||||||| &5' --------GGCCCTGCCCAGAGAG- 3' MAP1LC3A hsa-miR-1915 beg:150 end:172 pic:3' GGGCGGCGCAGC-GGGACCCC 5'& ||| |.| || | .|||||| &5' CCC-CTGGGTGGATCCTGGG- 3' MAP1LC3A hsa-miR-940 beg:270 end:284 pic:3' CCCCTCGCCCCC-GGGACGGAA 5'& || |||||||| &5' ----------GGCCCCTGCCT- 3' MAP1LC3A hsa-miR-761 beg:236 end:254 pic:3' ACACAGTCAAAGT-GGGACGACG 5'& ||| || ||||||||. &5' -----CAG---CACCCCTGCTGT 3' MAP1LC3A hsa-miR-1324 beg:279 end:289 pic:3' CTTTCACGTATCTTAAGACAGACC 5'& ||||||| &5' ----------------CTGTCTG- 3' MAP1LC3A ebv-miR-BART11-5p beg:267 end:289 pic:3' GTTGATCGCGTGGTTTGACAGACT 5'& .||| || || ||||||| &5' ---TTAG-GCCCCTGCCTGTCTG- 3' MAP1LC3A ebv-miR-BART13star beg:157 end:177 pic:3' GACATGCTCGGTGCTCGGCCAA 5'& ||. || || .|.|||||| &5' --GTG-GATCC-TGGGCCGGT- 3' MAP1LC3A ebv-miR-BART4star beg:373 end:392 pic:3' TGTGGACCACGGATGCACTACAC 5'& ||| .| |||||.||| &5' ------GGTCTCCACGTGGTGT- 3' MAP1LC3A hsa-miR-2114star beg:301 end:318 pic:3' TTCAGGGAACGAACTCCGAGC 5'& ||| ||||||| &5' ----CCCACCC--GAGGCTC- 3' MAP1LC3A hsa-miR-558 beg:220 end:238 pic:3' TAAAACCATG--TCGTCGAGT 5'& |||. |||||||| &5' -----GGTGGGGAGCAGCTC- 3' MAP1LC3A hsa-miR-541 beg:325 end:343 pic:3' TCAGGTCTAAGACACGGGTGGT 5'& | || |||||||| &5' ---CTGGACC---TGCCCACC- 3' MAP1LC3A hsa-miR-3184 beg:285 end:304 pic:3' TTTTCGAGCCAGACTCCGGGGAGT 5'& || | ||| |||||||| &5' ----GC-CCATCT---GCCCCTCA 3' MAP1LC3A sv40-miR-S1-5p beg:285 end:304 pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& || || || |||||||| &5' ---GCCCA--TCT-GCCCCTCA 3' MAP1LC3A sv40-miR-S1-5p beg:358 end:376 pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& ||||| ||||||| &5' --GGCTCCCC----GCCCCTC- 3' MAP1LC3A hsa-miR-1225-3p beg:2 end:20 pic:3' GACCCCCGCCGTGTCCCCGAGT 5'& || |.| .||||||| &5' ------GCAGTAGGGGGGCTC- 3' MAP1LC3A hcmv-miR-UL70-3p beg:275 end:298 pic:3' GGCGCGCGGTCGGGTAGGGG 5'& |.|| .|.| |||||||. | &5' CTGCCTGTCTGCCCATCTGC 3' MAP1LC3A hcmv-miR-US25-2-5p beg:319 end:340 pic:3' AGTAGGTGGACTTGTCTGGCGA 5'& || ||.||||.|| .|| | &5' -CA-CCGCCTGGACCTGCC-C- 3' MAP1LC3A hcmv-miR-US25-2-5p beg:411 end:434 pic:3' AGTAGGTGGACTTG--TCTGGCGA 5'& || | |||. |||..||| &5' ---TCTGCA-GAATAAAGATTGCT 3' MAP1LC3A hiv1-miR-TAR-3p beg:44 end:62 pic:3' ACCCAAGGGATCAATCGGTCTCT 5'& || ||||. ||||||| &5' -GG---CCCTGC----CCAGAGA 3' MAP1LC3A hsa-let-7b beg:69 end:90 pic:3' TTGGTGTGTTGGA-TGATGGAGT 5'& || |||. .||.|||| &5' --CCTG--AACTGAGCTGCCTC- 3' MAP1LC3A hsa-let-7estar beg:93 end:117 pic:3' CCTTTCGATCC-TCCG-GCATATC 5'& || .|||.|| |||| .||. &5' GGTGGGCTGGGCAGGCATGTG--- 3' MAP1LC3A hsa-let-7f beg:70 end:90 pic:3' TTGATATGTTAGATGATGGAGT 5'& ||. || .||.|||| &5' --CTGAACTGA--GCTGCCTC- 3' MAP1LC3A hsa-miR-1182 beg:297 end:319 pic:3' CAGTGTAGGGAGGGTTCTGGGAG 5'& | || ||| |||.||.|.|| &5' --CTCA-CCCACCCGAGGCTCT- 3' MAP1LC3A hsa-miR-1205 beg:401 end:422 pic:3' GAGTTTCGTTTGGGACGTCT 5'& ||| |. |.||||||| &5' -TCATTGTCC-CTCTGCAGA 3' MAP1LC3A hsa-miR-1207-5p beg:36 end:56 pic:3' GGGGAGGGTCGGA--GGGACGGT 5'& |||.|.| ||||||| &5' -----CCCGGTCAGGCCCTGCC- 3' MAP1LC3A hsa-miR-1207-5p beg:232 end:252 pic:3' GGGGAGGGTCGGAGGGACGGT 5'& |||||||| ||||||. &5' ---CTCCCAGCACCCCTGCT- 3' MAP1LC3A hsa-miR-1224-3p beg:203 end:230 pic:3' GAC--TCCTCTCTCCT-CCACCCC 5'& ||| .||| .|.||| ||||||| &5' CTGGTGGGATGGGGGAGGGTGGGG 3' MAP1LC3A hsa-miR-1228star beg:44 end:57 pic:3' GTGTGTGGACGGGGGCGGGTG 5'& | |||.||||| &5' ---------GGCCCTGCCCA- 3' MAP1LC3A hsa-miR-1228star beg:285 end:309 pic:3' GTGTGTGGACGGGG-GCGGGTG 5'& .| ||.||||||| | ||||| &5' -GCCCATCTGCCCCTCACCCAC 3' MAP1LC3A hsa-miR-1228star beg:319 end:342 pic:3' GTGTGTGGACGGGGGCGGGTG 5'& ||| |.|||| ||.|||||| &5' CAC-CGCCTGGACCTGCCCAC 3' MAP1LC3A hsa-miR-1229 beg:206 end:230 pic:3' GACACCCT--CCCGTCACCACTCTC 5'& |||||| ||| || ||||.|. &5' --GTGGGATGGGGGAG-GGTGGGG- 3' MAP1LC3A hsa-miR-1236 beg:203 end:225 pic:3' GACCTCTCTGTTCCCCTTCTCC 5'& |||| |.||. ||||.||.| &5' CTGGTGGGAT--GGGGGAGGG- 3' MAP1LC3A hsa-miR-1237 beg:203 end:225 pic:3' GACC-CCCTGCCTCGTCTTCCT 5'& |||| ||||.||.| ||.|| &5' CTGGTGGGATGGGG--GAGGG- 3' MAP1LC3A hsa-miR-1249 beg:202 end:227 pic:3' ACTTCTTCCC--CCCCTTCCCGCA 5'& | |. ||| ||||.||||.| &5' -GCTGGTGGGATGGGGGAGGGTG- 3' MAP1LC3A hsa-miR-1255a beg:245 end:266 pic:3' TTAGATGAAAGAAACGAGTAGGA 5'& ||.|| |.|||||.| &5' ---CTGCTGTGTG-GTTCATCTT 3' MAP1LC3A hsa-miR-1255b beg:246 end:265 pic:3' TTGGTGAAAGAAACGAGTAGGC 5'& | || |.|||||. &5' --CTGCTGTGTG-GTTCATCT- 3' MAP1LC3A hsa-miR-1260 beg:212 end:230 pic:3' ACCACCGTCTCCACCCTA 5'& ||| || || ||||||. &5' TGG-GGGAG-GGTGGGG- 3' MAP1LC3A hsa-miR-1260b beg:195 end:216 pic:3' TACCACCGTC-ACCACCCTA 5'& |||| .| ||||||||| &5' --GGTGCTGGCTGGTGGGAT 3' MAP1LC3A hsa-miR-1260b beg:211 end:230 pic:3' TACCACCGTCACCACCCTA 5'& |||| || || ||||||. &5' ATGG-GGGAG-GGTGGGG- 3' MAP1LC3A hsa-miR-1262 beg:287 end:308 pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& || |||.| ||||||| &5' --CCATCTGCCCC-TCACCCA- 3' MAP1LC3A hsa-miR-1270 beg:365 end:384 pic:3' TGTGTCGAGAAGGTATAGAGGTC 5'& |.| ||| .|||||| &5' -CGCCCCTCG-----GTCTCCA- 3' MAP1LC3A hsa-miR-1274a beg:65 end:84 pic:3' ACCGCGGACTTGTCCCTG 5'& ||. ||||||| | | &5' -GGTTCCTGAACT-GAGC 3' MAP1LC3A hsa-miR-1280 beg:194 end:215 pic:3' CCCACCGTCG-CCACCCT 5'& ||||| .|| ||||||| &5' GGGTGCTGGCTGGTGGGA 3' MAP1LC3A hsa-miR-1280 beg:91 end:102 pic:3' CCCACCGTCGCCACCCT 5'& |.|||||| &5' --------GTGGTGGG- 3' MAP1LC3A hsa-miR-1281 beg:205 end:224 pic:3' CC-CTCT-CCTCCTCCGCT 5'& || |.|| ||.||||| &5' GGTGGGATGGGGGAGG--- 3' MAP1LC3A hsa-miR-1284 beg:378 end:397 pic:3' CTTTTCGGT-C-CCAGACATATCT 5'& ||| | ||| ||||.|| &5' ------CCACGTGGT--GTATGGA 3' MAP1LC3A hsa-miR-1285 beg:39 end:60 pic:3' TCCAGAGTGAAACAACGGGTCT 5'& |||| .| |||||||| &5' -GGTCAGGCCC---TGCCCAGA 3' MAP1LC3A hsa-miR-1296 beg:33 end:54 pic:3' CCTCTACCTCGGTC---CCGGGATT 5'& || ||.| ||||||. &5' ------GGCCCCGGTCAGGCCCTG- 3' MAP1LC3A hsa-miR-1299 beg:407 end:429 pic:3' AGGGAGTGTGTCTTAAGGTCTT 5'& |||||| ..|||||| ||| &5' TCCCTC-TGCAGAATAA-AGA- 3' MAP1LC3A hsa-miR-1308 beg:321 end:341 pic:3' GGT-GACTTGG-TGGGTACG 5'& ||. |||.||| .|||| &5' CCGCCTGGACCTGCCCA--- 3' MAP1LC3A hsa-miR-140-3p beg:383 end:405 pic:3' GGCACCAAG-ATG-GGACACCAT 5'& |||||| |. .||||||| &5' -CGTGGTGTATGGATCTGTGGT- 3' MAP1LC3A hsa-miR-143 beg:244 end:266 pic:3' CTCGATGT--CACGAAGTAGAGT 5'& ||.| ||| |||||||. &5' ---CTGCTGTGTGGTTCATCTT- 3' MAP1LC3A hsa-miR-1538 beg:156 end:175 pic:3' TCCTTGTCGTCGTCGGGCCCGGC 5'& .| | ||.|||||| &5' ------GGTGGAT-CCTGGGCCG 3' MAP1LC3A hsa-miR-18a beg:142 end:169 pic:3' GAT-AGACGT-GATCTACGT-GGAAT 5'& ||| ||||| ||.|.|| | ||| &5' CTACTCTGCCCCTGGGTGGATCCT-- 3' MAP1LC3A hsa-miR-1908 beg:37 end:56 pic:3' CTGGTTAGCGGCAGGGGCGGC 5'& ||..|| | |||.||| &5' --CCGGTCA--GGCCCTGCC- 3' MAP1LC3A hsa-miR-1908 beg:351 end:372 pic:3' CTGGTTAGCGGCAGGGGCGGC 5'& |.|| | || |||||||| &5' GGCCCCTGGC--TCCCCGCC- 3' MAP1LC3A hsa-miR-1908 beg:235 end:253 pic:3' CTGGTTAGCGGCAGGGGCGGC 5'& ||| || |||.||.| &5' --CCA---GCAC-CCCTGCTG 3' MAP1LC3A hsa-miR-1909 beg:230 end:251 pic:3' GCCAC-TCGTGGGCC--GGGGACGC 5'& | ||| ||| ||||||| &5' ----GCAGCTCCCAGCACCCCTGC- 3' MAP1LC3A hsa-miR-196a beg:69 end:89 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& || ||| || |.||.||| &5' -CCTG-AAC-TG-AGCTGCCT- 3' MAP1LC3A hsa-miR-196b beg:69 end:89 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& || ||| .|.||.||| &5' -CCTG-AACT--GAGCTGCCT- 3' MAP1LC3A hsa-miR-197 beg:79 end:101 pic:3' CGACCCACCTCTTCCACCACTT 5'& |||| ||||||. &5' GCTGCCTCTACC--GTGGTGG- 3' MAP1LC3A hsa-miR-2114star beg:0 end:21 pic:3' TTCAGGGAA-CGAA-CTCCGAGC 5'& || |. |.|||||| &5' ----CCAGCAGTAGGGGGGCTCG 3' MAP1LC3A hsa-miR-296-5p beg:0 end:20 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||| | |||||||.| &5' -CAGCA--GTAGGGGGGCTC- 3' MAP1LC3A hsa-miR-3065-3p beg:185 end:206 pic:3' GAGGTTGTTATAGGA----CCACGACT 5'& |.||| |||||||. &5' ---------TGTCCCTCTGGGTGCTGG 3' MAP1LC3A hsa-miR-3126-5p beg:175 end:196 pic:3' ACGAAGA-CCGTAGACAGGGAGT 5'& |. ||. |||||||| &5' -GTGTTAGGGT---TGTCCCTC- 3' MAP1LC3A hsa-miR-3126-5p beg:394 end:416 pic:3' ACGAAGACCGTAG--ACAGGGAGT 5'& |||| .|| |||||||| &5' ----TCTGTGGTCATTGTCCCTC- 3' MAP1LC3A hsa-miR-3127 beg:330 end:348 pic:3' GAAGGGTAAGGTGTTCGGGACTA 5'& ||. |||| |||||| &5' ---CCTGC-CCAC---CCCTGA- 3' MAP1LC3A hsa-miR-3131 beg:308 end:333 pic:3' TTCCGGGAA-GGTGGTCAGGAGCT 5'& .||||.|| ||||| ||| || &5' GAGGCTCTGCCCACCG--CCTGGA 3' MAP1LC3A hsa-miR-3132 beg:141 end:156 pic:3' AGGAGACTCGAGGAAGAGATGGGT 5'& ||| ||||.||| &5' -----------CCTACTCTGCCC- 3' MAP1LC3A hsa-miR-3132 beg:274 end:300 pic:3' AGGA--GACT--CGAGGAAGAGATGGGT 5'& ||| ||| || || |||.||| &5' -CCTGCCTGTCTGC-CCA--TCTGCCC- 3' MAP1LC3A hsa-miR-3166 beg:269 end:290 pic:3' ATCCGGTCATCCGTAACAGACGC 5'& |||||| || ||||||| &5' TAGGCCCCT--GCC-TGTCTGC- 3' MAP1LC3A hsa-miR-3177 beg:241 end:256 pic:3' TGCACAGGGGTCACGGCACGT 5'& |||| |||.|||. &5' ------CCCC--TGCTGTGT- 3' MAP1LC3A hsa-miR-3178 beg:106 end:121 pic:3' GCTAGGCCG-GCGCGGGG 5'& ||| .|.||||| &5' ------GGCATGTGCCCC 3' MAP1LC3A hsa-miR-3180-3p beg:281 end:301 pic:3' CCGGA-GGCCTTCGAGGCGGGGT 5'& |.|| || ||.||||| &5' -GTCTGCCCA----TCTGCCCC- 3' MAP1LC3A hsa-miR-3180-3p beg:138 end:157 pic:3' CCGGAGGCCTTCGAGGCGGGGT 5'& || || |||.||||| &5' --CCACCTA---CTCTGCCCC- 3' MAP1LC3A hsa-miR-3189 beg:291 end:315 pic:3' GATGGGGTAGTC--TGGGTTCCC 5'& ||.|||| ||| ||||.||| &5' CTGCCCC-TCACCCACCCGAGG- 3' MAP1LC3A hsa-miR-3191 beg:395 end:415 pic:3' GACAGACCGGTCGATGCAGGGGT 5'& |||| ||.|| .|||||. &5' CTGT--GGTCAT---TGTCCCT- 3' MAP1LC3A hsa-miR-3196 beg:351 end:374 pic:3' CTCCGGGGAC-----GGCGGGGC 5'& |||||||| ||||||| &5' --GGCCCCTGGCTCCCCGCCCC- 3' MAP1LC3A hsa-miR-326 beg:203 end:224 pic:3' GACCTCCTT-CCCGGGTCTCC 5'& |||| ||.| ||| .|||| &5' CTGGTGGGATGGG---GGAGG 3' MAP1LC3A hsa-miR-326 beg:39 end:61 pic:3' GACC--TCCTTCCCGGGTCTCC 5'& || ||| |||||||| &5' --GGTCAGGCCCTGCCCAGAG- 3' MAP1LC3A hsa-miR-330-5p beg:40 end:62 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |.| ||.| | ||||||||| &5' GTC--AGGCCCT-GCCCAGAGA 3' MAP1LC3A hsa-miR-342-5p beg:228 end:249 pic:3' AGTTAGTGTCTA---TCGTGGGGA 5'& .||| ||||||||| &5' ------GCAGCTCCCAGCACCCCT 3' MAP1LC3A hsa-miR-345 beg:13 end:32 pic:3' CTCGGGACCTGATCCTCAGTCG 5'& |.||.| || ||.||||||.| &5' GGGCTC-GGCCTGGGAGTCGG- 3' MAP1LC3A hsa-miR-346 beg:91 end:113 pic:3' TCTCCGTCCGTACGCCCGTCTGT 5'& | || ||| .||||||.|| &5' -GTGGTGGGC---TGGGCAGGCA 3' MAP1LC3A hsa-miR-365star beg:346 end:368 pic:3' TGTC-GA-CGGGGACTTTCAGGGA 5'& || || |||||||. |||| &5' --AGACTGGCCCCTGGC--TCCC- 3' MAP1LC3A hsa-miR-371-5p beg:111 end:132 pic:3' TCACGGGGGTGTCAAACTCA 5'& |||||||| .||| ||| &5' -GTGCCCCCCTAGTCAGAG- 3' MAP1LC3A hsa-miR-412 beg:201 end:224 pic:3' TGCCGATCA-CCTGGTCCACTTCA 5'& ||||.|| |||. .|| ||.| &5' --GGCTGGTGGGATGGGG-GAGG- 3' MAP1LC3A hsa-miR-423-5p beg:281 end:304 pic:3' TTTCAGAGCGAG-AGACGGGGAGT 5'& |||| || ||||||||||| &5' ---GTCT-GCCCATCTGCCCCTCA 3' MAP1LC3A hsa-miR-423-5p beg:356 end:376 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& || |||| | ||||||| &5' -----CTGGCTCCCCGCCCCTC- 3' MAP1LC3A hsa-miR-4253 beg:320 end:340 pic:3' TGGGGGACCTGTACGGGA 5'& ||| ||||||| ||||| &5' ACCGCCTGGACCTGCCC- 3' MAP1LC3A hsa-miR-4258 beg:83 end:102 pic:3' GGTTCCGCCACCGCCCC 5'& || | ||||.||| &5' CCTCTACCGTGGTGGG- 3' MAP1LC3A hsa-miR-425star beg:57 end:77 pic:3' CCCGCCTGTGCTGTAAGGGCTA 5'& | | | .||||.|| &5' ----GAGCTCCTGGTTCCTGA- 3' MAP1LC3A hsa-miR-4270 beg:60 end:77 pic:3' CGGGAGGGGACTGAGGGACT 5'& |.||||. |.||||| &5' -----CTCCTGG-TTCCTGA 3' MAP1LC3A hsa-miR-4273 beg:118 end:137 pic:3' GACAGG--TAGTCTCTTGTG 5'& || .||||||..||| &5' ----CCTAGTCAGAGGGCAC 3' MAP1LC3A hsa-miR-4280 beg:45 end:66 pic:3' CGAGACGAGTCTTGATGTGAG 5'& || |||| ||||. .||| &5' GCCCTGCCCAGAGA---GCTC 3' MAP1LC3A hsa-miR-4284 beg:211 end:233 pic:3' TACCCCA--CTACA-CTCGGG 5'& |||||| |.|| |||| &5' ATGGGGGAGGGTGGGGAGC-- 3' MAP1LC3A hsa-miR-4289 beg:308 end:328 pic:3' ACTATCGGGACGTGTTACG 5'& || .||.|||| || || &5' -GA-GGCTCTGCCCACCGC 3' MAP1LC3A hsa-miR-4294 beg:242 end:261 pic:3' GGGACGACAT-CTGAGGG 5'& |||||||||. | || &5' CCCTGCTGTGTGGTTC-- 3' MAP1LC3A hsa-miR-4300 beg:219 end:241 pic:3' CTTCATCAG--GTCGAGGGT 5'& ..||.| ||||||||| &5' -GGGTGGGGAGCAGCTCCCA 3' MAP1LC3A hsa-miR-4303 beg:428 end:437 pic:3' GACAGGAGTCGAGTCTT 5'& ||||||. &5' ---------GCTCAGG- 3' MAP1LC3A hsa-miR-4304 beg:160 end:179 pic:3' AC-GGGACCTGTACGGCC 5'& | .|||||.| |.|| &5' -GATCCTGGGCCGGTCG- 3' MAP1LC3A hsa-miR-4309 beg:158 end:176 pic:3' AC-CTTAGGATCTGAGGTC 5'& | |.|||||.| ||.| &5' -GTGGATCCTGGG--CCGG 3' MAP1LC3A hsa-miR-4310 beg:208 end:227 pic:3' CCCTGTA-CTTACGACG 5'& ||||.. |.| | || &5' GGGATGGGGGAGGGTG- 3' MAP1LC3A hsa-miR-4313 beg:2 end:19 pic:3' CCCAAACCCCGG---TCCCCCGA 5'& || .||||||| &5' ---------GCAGTAGGGGGGCT 3' MAP1LC3A hsa-miR-432 beg:322 end:341 pic:3' GGTGGGTTACTGGATGAGGTTCT 5'& ||.||. |||||.| ||| &5' CCGCCTG--GACCTGC-CCA--- 3' MAP1LC3A hsa-miR-432 beg:302 end:324 pic:3' GGTGGGTTACTG-GATGAGGTTCT 5'& ||||||.| |.| ||.| ||| &5' CCACCCGA-GGCTCTGC-CCA--- 3' MAP1LC3A hsa-miR-4327 beg:278 end:299 pic:3' GGTCAGG-GGGTACGTTCGG 5'& || |||. ||||| | ||| &5' CCTGTCTGCCCAT-CT-GCC 3' MAP1LC3A hsa-miR-454star beg:201 end:220 pic:3' CGTCTCTGTTATAACTATCCCA 5'& |.| |||.||| &5' -----GGCTGGTGGGATGGGG- 3' MAP1LC3A hsa-miR-485-3p beg:382 end:395 pic:3' TCTCTCCTCTCGGCACATACTG 5'& |. |||||||. &5' ----------GTGGTGTATGG- 3' MAP1LC3A hsa-miR-486-3p beg:278 end:301 pic:3' TAGGACATGACTC---GACGGGGC 5'& ||||| ||| ||||||| &5' --CCTGT-CTGCCCATCTGCCCC- 3' MAP1LC3A hsa-miR-505star beg:348 end:368 pic:3' TGTAGTTATGAA---GGACCGAGGG 5'& ||| |||||||||| &5' --------ACTGGCCCCTGGCTCCC 3' MAP1LC3A hsa-miR-505star beg:53 end:75 pic:3' TGTAGTTATGAAGGACCGAGGG 5'& || .| .| ||||||.|||. &5' -CAGAGA-GC-TCCTGGTTCCT 3' MAP1LC3A hsa-miR-516a-3p beg:188 end:207 pic:3' TGGGAGACTTTCCTTCGT 5'& |||||||.. | .|| &5' -CCCTCTGGGTGCTGGC- 3' MAP1LC3A hsa-miR-516bstar beg:188 end:207 pic:3' TGGGAGACTTTCCTTCGT 5'& |||||||.. | .|| &5' -CCCTCTGGGTGCTGGC- 3' MAP1LC3A hsa-miR-518cstar beg:38 end:62 pic:3' GTCTTTCACGAAGGGA-GGTCTCT 5'& |.| || || ||. ||||||| &5' CGGTCAG-GC--CCTGCCCAGAGA 3' MAP1LC3A hsa-miR-520a-5p beg:180 end:200 pic:3' TCTTTCATGAAGGGAGACCTC 5'& |..|| |||||||||. &5' --AGGGTTG-TCCCTCTGGG- 3' MAP1LC3A hsa-miR-544 beg:404 end:424 pic:3' CTTGAACGATTTTTACGTCTTA 5'& |||. |||||||| &5' ----TTGTCCCTC-TGCAGAAT 3' MAP1LC3A hsa-miR-549 beg:173 end:192 pic:3' TCTCGAGTAGGTA-TCAACAGT 5'& | ||.| . .|||||| &5' ---GGTCGTGTTAGGGTTGTC- 3' MAP1LC3A hsa-miR-554 beg:198 end:219 pic:3' TGACCGACTCAGTCCTGATCG 5'& .||||||| || .|||. .| &5' GCTGGCTG-GT-GGGATGGG- 3' MAP1LC3A hsa-miR-557 beg:400 end:422 pic:3' TCTGTTCCGGGTGGGCACGTTTG 5'& .| || |.|| |.| ||||.| &5' GGTCATTGTCC-CTC-TGCAGA- 3' MAP1LC3A hsa-miR-557 beg:327 end:353 pic:3' TCTGTTCCGGGTGGGCACG-TTTG 5'& .||| |||||||| || |.|| &5' GGACCT-GCCCACCCCTGAAAGAC 3' MAP1LC3A hsa-miR-575 beg:59 end:85 pic:3' CGAGGAC--AGG--TTGAC-CGAG 5'& ||||||| ||| ||||| ||| &5' GCTCCTGGTTCCTGAACTGAGCT- 3' MAP1LC3A hsa-miR-583 beg:249 end:270 pic:3' CATTAC-CCTGGAAGGAGAAAC 5'& .|| || | ||.|.||| &5' ---GTGTGGTTCATCTTTTTT- 3' MAP1LC3A hsa-miR-596 beg:89 end:112 pic:3' GGGC-TC-CTCGGCCCGTCCGAA 5'& ||| .| |.||.|||||||| &5' -CCGTGGTGGGCTGGGCAGGC-- 3' MAP1LC3A hsa-miR-601 beg:313 end:335 pic:3' GAGGAGGTTGTTAGGATCTGGT 5'& |||. || || |||.|||| &5' CTCTGCCCACCG-CCTGGACC- 3' MAP1LC3A hsa-miR-604 beg:152 end:174 pic:3' CAGGACTTA---AGGCGTCGGA 5'& ||||..| ||| .||| &5' --CCTGGGTGGATCCTGGGCC- 3' MAP1LC3A hsa-miR-608 beg:323 end:346 pic:3' TGCCTC-GACAGGGTTGTGGTGGGGA 5'& | ||| || .| |||||||| &5' -----GCCTGGACCTGC-CCACCCCT 3' MAP1LC3A hsa-miR-608 beg:351 end:375 pic:3' TGCCTCGACA--GGGTTGT--GGTGGGGA 5'& ||| || .| ||.||||| &5' ------CTGGCCCCTGGCTCCCCGCCCCT 3' MAP1LC3A hsa-miR-610 beg:233 end:262 pic:3' AGGGTCGTG----TGTAA-ATCGAGT 5'& ||||||||| .| |.|.||| &5' TCCCAGCACCCCTGCTGTGTGGTTCA 3' MAP1LC3A hsa-miR-612 beg:39 end:59 pic:3' TTCCTCGAGTCTTCGGGACGGGTCG 5'& | |||| ||||||||||| &5' -----GGTCAG--GCCCTGCCCAG- 3' MAP1LC3A hsa-miR-620 beg:371 end:384 pic:3' TAAAGATATAGATAGAGGTA 5'& || .|||||| &5' ---------TCGGTCTCCA- 3' MAP1LC3A hsa-miR-625star beg:384 end:406 pic:3' ACTCCCCCTTTCAAGATATCAG 5'& | || | .| |||.|.||| &5' -GTGGTGTATGGATCTGTGGTC 3' MAP1LC3A hsa-miR-629star beg:202 end:223 pic:3' CGACCCGAATGCAACCCTCTTG 5'& ||||| |. | ||||.||. &5' GCTGG---TGGGATGGGGGAG- 3' MAP1LC3A hsa-miR-637 beg:223 end:242 pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& | .|||| |||.||||| &5' --GGGGAGC-----AGCTCCCAG- 3' MAP1LC3A hsa-miR-650 beg:68 end:91 pic:3' CAGGACTCT-CGCGACGGAGGA 5'& |||||| | ||||||||. &5' -TCCTGAACTGAGCTGCCTCT- 3' MAP1LC3A hsa-miR-654-3p beg:93 end:115 pic:3' TTCCACTACCAG--TCGTCTGTAT 5'& |||.||| .||||.|||. &5' ---GTGGTGGGCTGGGCAGGCATG 3' MAP1LC3A hsa-miR-657 beg:423 end:444 pic:3' GGATCTCTCCCACTCTTGGACGG 5'& ||| ..|||||| &5' -----AGATTGCTCAGGCCTGCC 3' MAP1LC3A hsa-miR-663 beg:35 end:56 pic:3' CGCCAGGGCGCCG---CGGGGCGGA 5'& || ||| |||. ||||.||| &5' --GG-CCC-CGGTCAGGCCCTGCC- 3' MAP1LC3A hsa-miR-663 beg:351 end:372 pic:3' CGCCAGGGCGCCGCGGGGCGGA 5'& || ||| .||| ||||||| &5' --GG-CCCCTGGCTCCCCGCC- 3' MAP1LC3A hsa-miR-665 beg:50 end:71 pic:3' TCCCCGGAGTCG---GAGGACCA 5'& ||| ||| |||||||| &5' ----GCC-CAGAGAGCTCCTGGT 3' MAP1LC3A hsa-miR-671-3p beg:156 end:176 pic:3' CCACCTCGGGACTCTTGGCCT 5'& |||||| .||||.| |||| &5' GGTGGA-TCCTGGG--CCGG- 3' MAP1LC3A hsa-miR-708 beg:46 end:68 pic:3' GGGTCGA-TCTAACATTCGAGGAA 5'& ||| || ||| .||||||| &5' CCCTGCCCAGA----GAGCTCCT- 3' MAP1LC3A hsa-miR-720 beg:225 end:243 pic:3' ACCTC--CG-GGGTCGCTCT 5'& |||| || |||||| &5' -GGAGCAGCTCCCAGC---- 3' MAP1LC3A hsa-miR-759 beg:143 end:154 pic:3' CAGTTTTAACAAACGTGAGACG 5'& .||||||| &5' --------------TACTCTGC 3' MAP1LC3A hsa-miR-767-5p beg:372 end:393 pic:3' GTACGAGTCTGTTG-GTACCACGT 5'& |||.| | | |.|||||.| &5' ----CTCGGTCTCCACGTGGTGTA 3' MAP1LC3A hsa-miR-873 beg:55 end:76 pic:3' TCCTCT-GAGTGTTCAAGGACG 5'& |||| ||| | .||||||| &5' --GAGAGCTC-CTGGTTCCTG- 3' MAP1LC3A hsa-miR-877star beg:203 end:224 pic:3' GACCCTCCT-CCCTCTTCTCCT 5'& |||| ||| |||.||.|. &5' CTGGTGGGATGGGGGAGGG--- 3' MAP1LC3A hsa-miR-920 beg:348 end:369 pic:3' ATGACGAAGGTGTCGAGGGG 5'& |||| || ..||||||| &5' -ACTGGC-CCCTGGCTCCCC 3' MAP1LC3A hsa-miR-98 beg:73 end:90 pic:3' TTGTTATGTTGAA-TGATGGAGT 5'& |||| .||.|||| &5' --------AACTGAGCTGCCTC- 3' MAP1LC3A hsv1-miR-H4 beg:141 end:155 pic:3' ACGAACGGACAGTTTGAGATGG 5'& ||| |||||.|| &5' ------CCT-----ACTCTGCC 3' MAP1LC3A hsv1-miR-H6-5p beg:268 end:295 pic:3' ATGTGGGG--GGACGGAA-GGTGG 5'& || .|||| ||||.|| |||.| &5' TAGGCCCCTGCCTGTCTGCCCATC 3' MAP1LC3A hsv2-miR-H10 beg:314 end:336 pic:3' GGCGGGTGG-GGGCGTGGG 5'& |.||||||| ||.| |||. &5' CTGCCCACCGCCTGGACCT 3' MAP1LC3A hsv2-miR-H10 beg:291 end:311 pic:3' GGCGGGTGGG-GGCGTGGG 5'& |.|||| |.| || ||||| &5' CTGCCC-CTCACC-CACCC 3' MAP1LC3A hsv2-miR-H22 beg:137 end:158 pic:3' CGGGTGGGTGCAGGTCTGGGGA 5'& ||||||.|| ||. .||||| &5' -CCCACCTAC-TCT--GCCCCT 3' MAP1LC3A hsv2-miR-H4-3p beg:93 end:115 pic:3' CTCAAGCGATCCGTTCGTGCC 5'& .|| |||.||||.|||.| &5' -GGTGGGCTGGGCAGGCATG- 3' MAP1LC3A hsv2-miR-H4-3p beg:423 end:446 pic:3' CTCAAGCGA-TCCGTTCGTGCC 5'& || |.||| |||| || .|| &5' -AGATTGCTCAGGCCTGCCTGG 3' MAP1LC3A hsv2-miR-H9-3p beg:213 end:231 pic:3' CTCCTCCTCTGGCTCCACCCTT 5'& ||.|||| ||||||.| &5' --GGGGGAG-----GGTGGGGA 3' MAP1LC3A mcv-miR-M1-3p beg:223 end:245 pic:3' AAGTCCTTC-TCTTAGGTCGTGT 5'& .||.|| || ||||||| &5' ---GGGGAGCAGCTCCCAGCAC- 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type MAP1LC3A chr20:g.34559817C>T COSM121115 hsa-miR-106a-3p chr20 34559817 C T cgccCATTGCggaca CUGCAAUG m6c HN_63081 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma] MAP1LC3A chr20:g.34559817C>T COSM121115 hsa-miR-3908 chr20 34559817 C T cgccCATTGCggaca GAGCAAUG m6c HN_63081 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma] MAP1LC3A chr20:g.34559817C>T COSM121115 hsa-miR-5197-5p chr20 34559817 C T cgcCCATTGcggaca CAAUGGCA m6a HN_63081 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma] MAP1LC3A chr20:g.34559817C>T COSM121115 hsa-miR-6717-5p chr20 34559817 C T cgccCATCGCggaca AGGCGAUG m6c HN_63081 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma] MAP1LC3A chr20:g.34559817C>T COSM121115 hsa-miR-937-3p chr20 34559817 C T cgcccatCGCGGAca AUCCGCGC m6b HN_63081 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma] MAP1LC3A chr20:g.34559818G>A COSM1214360 hsa-miR-3134 chr20 34559818 G A gcCCATCAcggacat UGAUGGAU m6a 587222 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559818G>A COSM1214360 hsa-miR-3605-3p chr20 34559818 G A gcccatCACGGAcat CCUCCGUG m6c 587222 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559818G>A COSM1214360 hsa-miR-572 chr20 34559818 G A gcccatcGCGGACat GUCCGCUC m6a 587222 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559818G>A COSM1214360 hsa-miR-6717-5p chr20 34559818 G A gccCATCGCggacat AGGCGAUG m6c 587222 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559818G>A COSM1214360 hsa-miR-8082 chr20 34559818 G A gcCCATCAcggacat UGAUGGAG m6a 587222 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559818G>A COSM1214360 hsa-miR-937-3p chr20 34559818 G A gcccatCGCGGAcat AUCCGCGC m6b 587222 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-3912-5p chr20 34559819 C T cccatcgTGGACATc AUGUCCAU m7a TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-4436b-5p chr20 34559819 C T cccatcGTGGACatc GUCCACUU m6a TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-4669 chr20 34559819 C T cccatcgCGGACAtc UGUGUCCG m6c TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-5092 chr20 34559819 C T cccatCGTGGAcatc AAUCCACG m6c TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-572 chr20 34559819 C T cccatcGCGGACatc GUCCGCUC m6a TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-6717-5p chr20 34559819 C T ccCATCGCggacatc AGGCGAUG m6c TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559819C>T COSM1411301 hsa-miR-937-3p chr20 34559819 C T cccatCGCGGAcatc AUCCGCGC m6b TCGA-CK-5914-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-1231 chr20 34559820 G A ccatcgCAGACAtct GUGUCUGG m6b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-219b-5p chr20 34559820 G A ccatcgcGGACATCt AGAUGUCC m7b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-3120-5p chr20 34559820 G A ccatcgCAGACAtct CCUGUCUG m6c TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-346 chr20 34559820 G A ccatcGCAGACAtct UGUCUGCC m7a TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-3912-5p chr20 34559820 G A ccatcgcGGACATct AUGUCCAU m6a TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-4288 chr20 34559820 G A ccatcGCAGACAtct UUGUCUGC m7b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-4433b-5p chr20 34559820 G A ccatcgcGGACATct AUGUCCCA m6a TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-4527 chr20 34559820 G A ccatcGCAGACatct UGGUCUGC m6c TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-4669 chr20 34559820 G A ccatcgCGGACAtct UGUGUCCG m6c TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-572 chr20 34559820 G A ccatcGCGGACatct GUCCGCUC m6a TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-6068 chr20 34559820 G A ccaTCGCAGacatct CCUGCGAG m6b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-632 chr20 34559820 G A ccatcGCAGACAtct GUGUCUGC m7b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-6503-5p chr20 34559820 G A ccatcGCAGACatct AGGUCUGC m6c TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-654-3p chr20 34559820 G A ccatcgCAGACATct UAUGUCUG m7b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-6834-3p chr20 34559820 G A ccatcgcGGACATct UAUGUCCC m6b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma] MAP1LC3A chr20:g.34559820G>A COSM185720 hsa-miR-937-3p chr20 34559820 G A ccatCGCGGAcatct AUCCGCGC m6b TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region MAP1LC3A High_conserved miR-138/138ab chr20:33147051 7-mer-A1 44 CDS MAP1LC3A High_conserved miR-138/138ab chr20:33147593 7-mer-A1 78 CDS, ncRNA MAP1LC3A High_conserved miR-146ac/146b-5p chr20:33137807 7-mer-m8 7 CDS MAP1LC3A High_conserved miR-18ab/4735-3p chr20:33146125 7-mer-m8 9 5pUTR MAP1LC3A High_conserved miR-214/761/3619-5p chr20:33147583 7-mer-m8 69 CDS, ncRNA MAP1LC3A High_conserved miR-214/761/3619-5p chr20:33147955 7-mer-m8 18 3pUTR, ncRNA MAP1LC3A High_conserved miR-216a chr20:33137796 7-mer-m8 2 CDS MAP1LC3A High_conserved miR-24/24ab/24-3p chr20:33147706 8-mer 51 3pUTR, ncRNA MAP1LC3A High_conserved miR-27abc/27a-3p chr20:33146369 7-mer-m8 42 5pUTR MAP1LC3A High_conserved miR-128/128ab chr20:33146368 7-mer-A1 42 5pUTR MAP1LC3A Medium_conserved miR-539/539-5p chr20:33145975 7-mer-m8 9 5pUTR MAP1LC3A Medium_conserved miR-543 chr20:33146506 7-mer-m8 49 5pUTR MAP1LC3A Medium_conserved miR-544/544ab/544-3p chr20:33148125 7-mer-m8 56 3pUTR, ncRNA MAP1LC3A Medium_conserved miR-615-3p chr20:33147724 7-mer-m8 0 3pUTR, ncRNA MAP1LC3A Medium_conserved miR-873 chr20:33147778 8-mer 16 3pUTR, ncRNA MAP1LC3A Medium_conserved miR-149 chr20:33147708 7-mer-m8 47 3pUTR, ncRNA MAP1LC3A Medium_conserved miR-186 chr20:33146058 7-mer-m8 9 5pUTR MAP1LC3A Medium_conserved miR-197 chr20:33147587 7-mer-A1 60 CDS, ncRNA MAP1LC3A Medium_conserved miR-28-5p/708/1407/1653/3139 chr20:33147770 7-mer-m8 27 3pUTR, ncRNA MAP1LC3A Medium_conserved miR-326/330/330-5p chr20:33146641 7-mer-m8 18 5pUTR, ncRNA MAP1LC3A Medium_conserved miR-326/330/330-5p chr20:33147763 8-mer 13 3pUTR, ncRNA MAP1LC3A Medium_conserved miR-346 chr20:33146622 7-mer-A1 4 5pUTR, ncRNA MAP1LC3A Medium_conserved miR-370 chr20:33147641 7-mer-A1 73 CDS, ncRNA MAP1LC3A Medium_conserved miR-125a-3p/1554 chr20:33145927 7-mer-m8 11 5pUTR MAP1LC3A Medium_conserved miR-485-5p/1698/1703/1962 chr20:33145958 7-mer-m8 11 5pUTR MAP1LC3A Medium_conserved miR-488 chr20:33146695 8-mer 44 CDS, ncRNA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score MAP1LC3A RAID00145213 hsa-miR-2467-3p miRNA MIMAT0019953 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00208675 hsa-miR-4673 miRNA MIMAT0019755 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00265571 hsa-miR-6840-3p miRNA MIMAT0027583 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00369318 hsa-miR-6743-5p miRNA MIMAT0027387 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00379837 hsa-miR-5006-5p miRNA MIMAT0021033 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00542869 hsa-miR-486-3p miRNA MIMAT0004762 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00913723 hsa-miR-3126-5p miRNA MIMAT0014989 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00917829 hsa-miR-6766-5p miRNA MIMAT0027432 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID00941452 hsa-miR-423-5p miRNA MIMAT0004748 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID01108830 hsa-miR-140-3p miRNA MIMAT0004597 MAP1LC3A mRNA 84557 Prediction 0.2202 MAP1LC3A RAID01162641 hsa-miR-330-5p miRNA MIMAT0004693 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID01319561 hsa-miR-6827-5p miRNA MIMAT0027554 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID01389612 hsa-miR-4692 miRNA MIMAT0019783 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID01410386 hsa-miR-6721-5p miRNA MIMAT0025852 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID01595740 hsa-miR-326 miRNA MIMAT0000756 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID01802070 hsa-miR-873-5p miRNA MIMAT0004953 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02044604 hsa-miR-1207-5p miRNA MIMAT0005871 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02206837 hsa-miR-4650-5p miRNA MIMAT0019713 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02271137 hsa-miR-3158-5p miRNA MIMAT0019211 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02312722 hsa-miR-4755-3p miRNA MIMAT0019896 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02367591 hsa-miR-4688 miRNA MIMAT0019777 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02515068 hsa-miR-6756-5p miRNA MIMAT0027412 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02588685 hsa-miR-425-5p miRNA MIMAT0003393 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02607502 hsa-miR-6893-5p miRNA MIMAT0027686 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02636162 hsa-miR-940 miRNA MIMAT0004983 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02717778 hsa-miR-197-3p miRNA MIMAT0000227 MAP1LC3A mRNA 84557 CLIP-seq 0.5483 MAP1LC3A RAID02808587 hsa-miR-708-5p miRNA MIMAT0004926 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID02836969 hsa-miR-4645-5p miRNA MIMAT0019705 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03002788 hsa-miR-28-5p miRNA MIMAT0000085 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03020493 hsa-miR-6808-5p miRNA MIMAT0027516 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03060948 hsa-miR-3184-5p miRNA MIMAT0015064 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03129922 hsa-miR-214-3p miRNA MIMAT0000271 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03584498 hsa-miR-3678-3p miRNA MIMAT0018103 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03584805 hsa-miR-155-5p miRNA MIMAT0000646 MAP1LC3A mRNA 84557 Western Blot//RT-PCR 0.8808 MAP1LC3A RAID03700006 hsa-miR-544a miRNA MIMAT0003164 MAP1LC3A mRNA 84557 Prediction 0.2202 MAP1LC3A RAID03842495 hsa-miR-335-5p miRNA MIMAT0000765 MAP1LC3A mRNA 84557 Microarray 0.5483 MAP1LC3A RAID03853307 hsa-miR-4736 miRNA MIMAT0019862 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03921582 hsa-miR-4763-3p miRNA MIMAT0019913 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID03966646 hsa-miR-4514 miRNA MIMAT0019051 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID04030725 hsa-miR-6875-5p miRNA MIMAT0027650 MAP1LC3A mRNA 84557 Prediction 0.1828 MAP1LC3A RAID05011938 CRNDE lncRNA 643911 MAP1LC3A protein 84557 Microarray//RNA-seq 0.6606 MAP1LC3A RAID05117329 FENDRR lncRNA 400550 MAP1LC3A protein 84557 Microarray//RNA-seq 0.6606