SNP - dbSNP |
dbSNP | Type | Alleles | Het | Se(het) | Fxn-class | Gene Name | Assembly | Chr-pos | Sequence | Entrez Gene |
rs6212825 | snp | A/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41585980 | GAAACATCTTTGTAC[A/T]AGGTAAACNAGGAGT | 269424 |
rs6212838 | snp | C/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41585989 | TTGTACNAGGTAAAC[C/T]AGGAGTGTNTTCCTG | 269424 |
rs6212852 | snp | A/G | 0.5 | 0 | intron-variant | Jade1 | Mm_Celera | 3:41585998 | GTAAACNAGGAGTGT[A/G]TTCCTGTGCCCACNG | 269424 |
rs6212868 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Jade1 | Mm_Celera | 3:41586012 | TNTTCCTGTGCCCAC[C/T]GTCTTCAGCTCTAGG | 269424 |
rs6213390 | snp | A/G | 0.359862 | 0.224567 | intron-variant | Jade1 | Mm_Celera | 3:41586107 | GGAGAAAAATCATCT[A/G]CTATTCAAAATTCTA | 269424 |
rs6228139 | snp | C/T | 0.497778 | 0.0332592 | intron-variant | Jade1 | GRCm38.p3 | 3:41586553 | AACTTTGCATCAGTG[C/T]AGTGNACCTTTGCCT | 269424 |
rs6228154 | snp | C/T | 0.5 | 0 | intron-variant | Jade1 | Mm_Celera | 3:41586558 | TGCATCAGTGNAGTG[C/T]ACCTTTGCCTNCTCT | 269424 |
rs6228583 | snp | A/G | 0.497778 | 0.0332592 | intron-variant | Jade1 | GRCm38.p3 | 3:41586569 | AGTGNACCTTTGCCT[A/G]CTCTGGCTCCTTGGA | 269424 |
rs13464609 | snp | C/T | 0.465374 | 0.126941 | utr-variant-3-prime | Jade1 | GRCm38.p3 | 3:41615389 | TGTTCAGATTCCTGA[C/T]TCATTTATACATCTG | 269424 |
rs13477076 | snp | A/G | 0.418802 | 0.184407 | synonymous-codon | Jade1 | GRCm38.p3 | 3:41593845 | CTCTGAGCCCCCAGC[A/G]TTAGGCTACGTCGAT | 269424 |
rs30021668 | snp | A/G | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41572207 | TGGAACTTGGGATGA[A/G]AAGTGCAGTGCTCAC | 269424 |
rs30058425 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41605202 | TGTGATTATTTCTCC[C/T]GTTAATCTTTACTGT | 269424 |
rs30152273 | snp | A/G | 0.493827 | 0.0552116 | intron-variant | Jade1 | GRCm38.p3 | 3:41583611 | TTTCGCCCATGCAGC[A/G]AGGGCCACCTGTGAT | 269424 |
rs30156169 | snp | A/G | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41581153 | CAAGTTGATGATCGC[A/G]TGTTCCCATCTTGGG | 269424 |
rs30159575 | snp | A/C | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41558086 | TCAGTGCTGCTGACC[A/C]TGAAGTTGGTTAGAG | 269424 |
rs30167730 | snp | G/T | 0.5 | 0 | intron-variant | Jade1, Gm31207 | Mm_Celera | 3:41612418 | ATGCCCTCTGCTGGC[G/T]TCCACGGGCACTGTA | 269424 |
rs30204043 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Jade1 | GRCm38.p3 | 3:41587709 | ATGAGAAGGGGCGGC[A/G]GCAGGGCCGGATAGG | 269424 |
rs30204773 | snp | C/T | 0.5 | 0 | synonymous-codon | Jade1 | GRCm38.p3 | 3:41596784 | TGGCGAGGACGGCAA[C/T]GAGATGGTGTTCTGT | 269424 |
rs30219018 | snp | C/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41578531 | CCCTGGACTCTCTCA[C/T]CGTTCTCAGTTCACC | 269424 |
rs30255990 | snp | A/G | 0.475309 | 0.108333 | utr-variant-3-prime, upstream-variant-2KB | Jade1, Gm31207 | GRCm38.p3 | 3:41614297 | CAGAGGGCCAGGCTT[A/G]AATAGCACCATGTAT | 269424 |
rs30256035 | snp | A/G | 0.32 | 0.24 | intron-variant | Jade1 | GRCm38.p3 | 3:41588466 | CTGCAGGCTCTCTTG[A/G]CTCGCTGTTCACAAG | 269424 |
rs30301309 | snp | A/T | 0.5 | 0 | utr-variant-3-prime, downstream-variant-500B | Jade1, LOC105244432 | Mm_Celera | 3:41616123 | AAATGAAAAAAAAAA[A/T]AAAAAAAATAATAAA | 269424 |
rs30304130 | snp | A/G | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41577125 | TTCCGAGAATGAGGG[A/G]CCACATCTGGTGAGA | 269424 |
rs30363456 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41575421 | TATGGCTGTCATGTT[C/T]CTCATGTTTCAGTGA | 269424 |
rs30404235 | snp | C/T | 0.304688 | 0.243945 | intron-variant | Jade1 | Mm_Celera | 3:41595116 | AATACTAAGAACTCA[C/T]GTGTTCACAGCTGTG | 269424 |
rs30427448 | snp | C/T | 0.475309 | 0.108333 | intron-variant | Jade1, Gm31207 | GRCm38.p3 | 3:41610777 | TTTGCCCTTTGAAGT[C/T]CCAGCAGCAGCACTC | 269424 |
rs30452130 | snp | G/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41606353 | AGAGGCCCTTTTAGT[G/T]CATCATCTAATGCTG | 269424 |
rs30467756 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41605256 | TCTTCATCCCCTATT[C/T]CCTTGTCCTTATAGA | 269424 |
rs30505976 | snp | C/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41588652 | ACCTGTGCTTTTTTG[C/T]TTGTTTGTTTTGTGC | 269424 |
rs30511255 | snp | A/G | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41589077 | TAAGTAAGTGCATGC[A/G]AACCTGCCGCCCACA | 269424 |
rs30517885 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Jade1 | GRCm38.p3 | 3:41579221 | TGTGGGTGTGGACAT[C/T]AGGTCCTCACACGAG | 269424 |
rs30546399 | snp | A/G | 0.5 | 0 | intron-variant, upstream-variant-2KB | Jade1, LOC105244433 | GRCm38.p3 | 3:41564390 | TAGAATGGGTTTCCA[A/G]TGATGAGACCTTTTA | 269424 |
rs30554944 | snp | A/C | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41587244 | AATGGTACGAATCAC[A/C]TATAAGGGTGGAGTT | 269424 |
rs30564196 | snp | A/G | 0.49827 | 0.0293608 | intron-variant | Jade1 | GRCm38.p3 | 3:41589991 | TCGGAACGTCTCTGC[A/G]CCTGTATTTTACTCT | 269424 |
rs30568856 | snp | C/T | 0.455 | 0.143091 | intron-variant | Jade1 | GRCm38.p3 | 3:41580575 | CGACCTTGGATGGGT[C/T]GCTGTAAGGAGCAAA | 269424 |
rs30602261 | snp | A/C | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41557760 | GTGAATGCCGAGGAG[A/C]GCGCCATTTTCTGGG | 269424 |
rs30625047 | snp | G/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41580545 | TAATAAGGAGTGGGG[G/T]TGCCCCGACTAGTAC | 269424 |
rs30651928 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41595006 | CCAAATGCTTTACAC[C/T]GCCTGTATAAAACCA | 269424 |
rs30652095 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41575434 | TTCCTCATGTTTCAG[C/T]GAGTGGACTCTGGGC | 269424 |
rs30695432 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1, Gm31207 | GRCm38.p3 | 3:41612123 | GAGGAGACAAAACAT[C/T]GAGACTTGCTGTTTT | 269424 |
rs30704858 | snp | G/T | 0.49827 | 0.0293608 | intron-variant | Jade1 | GRCm38.p3 | 3:41582115 | TAGAAATGATAGGTA[G/T]CAACTTAGCAACTCA | 269424 |
rs30705250 | snp | G/T | 0.487535 | 0.077957 | intron-variant | Jade1 | GRCm38.p3 | 3:41574448 | AGATGGTGCTCCAGT[G/T]AAGGGTTACTTCGAT | 269424 |
rs30706374 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Jade1 | GRCm38.p3 | 3:41594345 | TGCTGTTTCTCAGAC[A/G]GAGCCTACAAAGTCA | 269424 |
rs30706599 | snp | A/G | 0.493827 | 0.0552116 | intron-variant | Jade1 | Mm_Celera | 3:41584140 | ACCCAGCAAAATGTG[A/G]GAAGAGGGTCCACCA | 269424 |
rs30714937 | snp | C/G | 0.5 | 0 | intron-variant, upstream-variant-2KB | Jade1, LOC105244433 | Mm_Celera | 3:41562188 | TGTCTCTGTCTCTCT[C/G]TGTGTCTCGTGTGTG | 269424 |
rs30747905 | snp | A/G | 0.475309 | 0.108333 | missense, upstream-variant-2KB | Jade1, Gm31207 | GRCm38.p3 | 3:41613444 | CATCAGCACAACAGA[A/G]AAATGGTGTGGTGAC | 269424 |
rs30751585 | snp | C/T | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41572052 | CTTTTGGGAAACTTT[C/T]CTGTAGCCGTGTAAT | 269424 |
rs30759390 | snp | A/C | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41597766 | GCTTAAGCATAGATA[A/C]AGGGGCCTTTTACCC | 269424 |
rs30805858 | snp | C/T | 0.493827 | 0.0552116 | intron-variant | Jade1 | GRCm38.p3 | 3:41579063 | CTGCATGTGTGGCTG[C/T]GCATGTGTGCCTTAG | 269424 |
rs30806980 | snp | C/T | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41591992 | TCAGAGGGCAGTGGC[C/T]TCTGAATTTAGCACA | 269424 |
rs30808242 | snp | A/G | 0.475309 | 0.108333 | intron-variant | Jade1 | Mm_Celera | 3:41569598 | CTCACCTGAGTAACA[A/G]AAATAAAAATACTAG | 269424 |
rs30855039 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Jade1 | GRCm38.p3 | 3:41595351 | CAGGGCAGCTGTGAG[C/T]GCAGGGCAGCTGGCG | 269424 |
rs30944465 | snp | G/T | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41580547 | ATAAGGAGTGGGGGT[G/T]CCCCGACTAGTACGA | 269424 |
rs31043571 | snp | G/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41603941 | TTTCTCCATCCTTCC[G/T]GAACTGGGCTCTTGT | 269424 |
rs31097274 | snp | C/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41603886 | TCTGTGCTGACTTCC[C/T]TGGGGCCTAAAGGAA | 269424 |
rs31135208 | snp | A/T | 0.49827 | 0.0293608 | intron-variant | Jade1 | GRCm38.p3 | 3:41587924 | AGCACGGAGCTTGGG[A/T]TTTTTGCTCAGAGCT | 269424 |
rs31142244 | snp | A/T | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41576272 | TGCTGTCTCCTTTGA[A/T]GAAATCTACTGTAAT | 269424 |
rs31189094 | snp | A/G | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41575316 | GCCGATTAGTGGTCC[A/G]GTTGGGGTCATTGGC | 269424 |
rs31248442 | snp | A/C | 0.487535 | 0.077957 | intron-variant | Jade1 | GRCm38.p3 | 3:41578990 | GCTCACAGGGTGTCT[A/C]TCTGAAGGGGGCTTT | 269424 |
rs31282851 | snp | G/T | 0.465374 | 0.126941 | intron-variant | Jade1 | GRCm38.p3 | 3:41587047 | CAGTCTCATTCGCAG[G/T]GTGCTCACATGGTTT | 269424 |
rs31294950 | snp | C/G | 0.444444 | 0.157135 | intron-variant, upstream-variant-2KB, nc-transcript-variant | Jade1, LOC105244433 | Mm_Celera | 3:41562780 | AGTTTGAGTTTAAGT[C/G]TTATTCTCAGTCCTA | 269424 |
rs31313146 | snp | C/T | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41572562 | TTTGGAACCCTTTTG[C/T]ACCTTCCCTAAAATG | 269424 |
rs31319778 | snp | A/G | 0.487535 | 0.077957 | intron-variant | Jade1 | GRCm38.p3 | 3:41580013 | TTAGGCCCAAGTGGC[A/G]TGTTTTGTTCCTCTA | 269424 |
rs31369548 | snp | G/T | 0.444444 | 0.157135 | intron-variant | Jade1 | GRCm38.p3 | 3:41576076 | CCAGCACTAACTCCT[G/T]GCTGGGCTTCTGCAC | 269424 |
rs31370504 | snp | A/T | 0.465374 | 0.126941 | intron-variant | Jade1, Gm31207 | GRCm38.p3 | 3:41610619 | CCTCTAAAATGTGCG[A/T]TTAGCACCAGTGTTC | 269424 |
rs31378148 | snp | C/T | 0.5 | 0 | intron-variant, upstream-variant-2KB | Jade1, LOC105244433 | GRCm38.p3 | 3:41564225 | GTGAGGGTATGTTTT[C/T]CCAAACATAGGTGTG | 269424 |
rs31387177 | snp | G/T | 0.48 | 0.0979796 | intron-variant | Jade1, Gm31207 | GRCm38.p3 | 3:41612071 | TGAGGGTTCCTGTAG[G/T]ACACAATGGAACTGA | 269424 |
rs31428443 | snp | C/T | 0.487535 | 0.077957 | intron-variant | Jade1 | GRCm38.p3 | 3:41590219 | TGCCCTTGGTGTCTA[C/T]TTGGCACTGAGCTTT | 269424 |
rs31462350 | snp | C/T | 0.265928 | 0.249492 | intron-variant | Jade1 | Mm_Celera | 3:41595539 | TTGAAAATGTGGTGG[C/T]TTTGCAATAACGTGT | 269424 |
rs31476742 | snp | A/G | 0.5 | 0 | intron-variant | Jade1 | GRCm38.p3 | 3:41576459 | CATCGAACTCAGGTT[A/G]ATACTTGGTAGCAAG | 269424 |
rs31490448 | snp | A/G | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41580625 | GTTCCTGAAGCCTGT[A/G]GTTCCTCTGAGGGGT | 269424 |
rs31517039 | snp | A/G | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41605443 | GAAGGGCTCGTTAGA[A/G]AGAGCCAAGCACTGC | 269424 |
rs31566305 | snp | C/T | 0.487535 | 0.077957 | intron-variant | Jade1 | GRCm38.p3 | 3:41589623 | TTTCTCTGCGGCCAT[C/T]CCGAGGCGCCGGGCA | 269424 |
rs31639224 | snp | A/T | 0.484429 | 0.0868505 | intron-variant | Jade1 | GRCm38.p3 | 3:41589963 | ACAGTGCGCACTTTA[A/T]TTTTTTGTGACATCG | 269424 |
rs31728659 | snp | A/T | 0.5 | 0 | intron-variant, upstream-variant-2KB | Jade1, LOC105244433 | GRCm38.p3 | 3:41562132 | GCAGTGGTGATGGAG[A/T]CACCTCTCTTGAAAA | 269424 |
rs33861718 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Jade1 | GRCm38.p3 | 3:41587616 | AAGTTAGGGGAGAAA[C/T]GAAGGTGGTTGGGAA | 269424 |
rs45641475 | snp | C/T | | | intron-variant | Jade1 | GRCm38.p3 | 3:41585764 | CATCTGCACACTCAG[C/T]TGGGAGTATCATTGG | 269424 |
rs45671788 | snp | C/T | | | intron-variant, upstream-variant-2KB, nc-transcript-variant | Jade1, LOC105244433 | Mm_Celera | 3:41562521 | ATTATGATCTTGTCT[C/T]TTGGGTTCAATATCT | 269424 |
rs45676814 | snp | A/G | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41583600 | GAGTGGCATCTTTTC[A/G]CCCATGCAGCGAGGG | 269424 |
rs45707345 | snp | A/G | | | upstream-variant-2KB | Jade1 | Mm_Celera | 3:41555000 | CAACTTCTAACACAT[A/G]CTAGAATGATCACAG | 269424 |
rs45762060 | snp | C/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41582027 | CCTGCTTTCTAGGCA[C/T]GTTGCCTCAGACATT | 269424 |
rs45799218 | snp | A/C | 0.244898 | 0.249948 | intron-variant | Jade1 | Mm_Celera | 3:41593031 | TGGTAGAGGAATTGT[A/C]TGGGGCCATATGTTC | 269424 |
rs45804266 | snp | A/G | 0.124444 | 0.216185 | intron-variant | Jade1 | Mm_Celera | 3:41590525 | GATGTTAAGAGTGGC[A/G]TCCTGGCACAAGACC | 269424 |
rs45849056 | snp | C/T | 0.124444 | 0.216185 | intron-variant | Jade1 | Mm_Celera | 3:41596155 | GGATCTAAATTTATG[C/T]ATTTCAGTTTGGTGA | 269424 |
rs45868970 | snp | A/G | 0.459184 | 0.136902 | intron-variant | Jade1 | Mm_Celera | 3:41585591 | TCCTCTTGCTAAAAA[A/G]GTATTTTATGCTATA | 269424 |
rs45876831 | snp | A/C | 0.391111 | 0.206368 | intron-variant | Jade1, Gm31207 | Mm_Celera | 3:41611258 | TTTTATGGGTATCCC[A/C]GGCAGCTGCTTGCAT | 269424 |
rs45889488 | snp | G/T | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41577945 | CTGCTTTCTCTGGAG[G/T]TTTGTGAGGAGTCCT | 269424 |
rs45891807 | snp | A/C | 0.32 | 0.24 | intron-variant | Jade1, Gm31207 | Mm_Celera | 3:41610312 | GACTTCATGGTCTAG[A/C]TTTTGGAGCAATCTA | 269424 |
rs45931718 | snp | C/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41568859 | CTACACTTGTTCGAG[C/T]TCCCAAATAAAGACA | 269424 |
rs45958999 | snp | G/T | 0.32 | 0.24 | intron-variant | Jade1 | Mm_Celera | 3:41584449 | CACACCGGGTTGTCA[G/T]GTGCTGTCTGTGTAA | 269424 |
rs45989237 | snp | C/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41608759 | ACTGCATGGCTTGTG[C/T]CAGAGAAGCAGCTAG | 269424 |
rs45997740 | snp | C/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41568021 | AAACTGAGTTAAGAT[C/T]CTCAAATCAAACGTC | 269424 |
rs46000219 | snp | A/C | 0.48 | 0.0979796 | intron-variant | Jade1 | GRCm38.p3 | 3:41592881 | TGTATGTGGTCAAAA[A/C]CAGACGTGGCAGGAC | 269424 |
rs46020247 | snp | C/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41568943 | CCTGTTTGTGGCTGC[C/T]TACCCTACTTACTAC | 269424 |
rs46026478 | snp | A/G | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41590664 | TGTATACTGTGACCC[A/G]TGCTTAGCAGCACAA | 269424 |
rs46034826 | snp | A/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41607431 | CCAGCTTCCGGAGGC[A/T]GTCATCTTACTCTGG | 269424 |
rs46044028 | snp | G/T | 0.124444 | 0.216185 | intron-variant | Jade1 | Mm_Celera | 3:41587925 | GCACGGAGCTTGGGA[G/T]TTTTGCTCAGAGCTG | 269424 |
rs46054225 | snp | C/T | 0.32 | 0.24 | intron-variant | Jade1 | Mm_Celera | 3:41590035 | GAGTCAGCTCTTAAC[C/T]GCTACTACACCTTTC | 269424 |
rs46083634 | snp | A/C/T | 0.32 | 0.24 | intron-variant | Jade1 | GRCm38.p3 | 3:41580222 | CGGTGAAGCGCTGCC[A/C/T]TTCTCCTGCCCTGAA | 269424 |
rs46129128 | snp | C/T | 0.391111 | 0.206368 | intron-variant | Jade1 | Mm_Celera | 3:41578377 | AGCTTGAGGTTGTTC[C/T]CTGAAGTCTGGGATG | 269424 |