DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Ift80; Kiaa1374; Wdr56 ATTTA 1-2334 2755-2759

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 68259 Ift80 auuuggugguAUACUUUGGUcg | | |||||| uuguuuuuuuUUUUAAACCAua 3 13 975 996 [mm9:3:68696997-68697018:-] 0.5063 124 0 -6.08 -0.1429 MIMAT0000137 mmu-miR-126-5p 68259 Ift80 gcgcAUGGUUUUCAUUAUUAc | :| |: ||||||| uauuUUUCUAGUCUAAUAAUu 2 18 270 290 [mm9:3:68697703-68697723:-] 0.5264 145 7 -4.88 -0.7203 MIMAT0000154 mmu-miR-142-5p 68259 Ift80 ucaUCACGAAAG--AUGAAAUAc ||| : ||| |||||||| uaaAGUAUCUUCCAUACUUUAUg 2 19 474 496 [mm9:3:68697497-68697519:-] 0.5724 157 7 -14.33 -0.7548 MIMAT0000161 mmu-miR-151-3p 68259 Ift80 ggaguuccucggaGUCAGAUc :|||||| auuucuauuuuucUAGUCUAa 2 9 265 285 [mm9:3:68697708-68697728:-] 0.5264 124 6 -10.23 -0.1919 MIMAT0004539 mmu-miR-183* 68259 Ift80 aauaccgGGAAGCCAUUAAGug |||| |||||| caaaauaCCUUAUAUAAUUCca 3 16 241 262 [mm9:3:68697731-68697752:-] 0.5264 131 0 -11.00 -0.1217 MIMAT0000367 mmu-miR-291a-5p 68259 Ift80 ucucucccggaggugAAACUAc |||||| auuguauguauucuaUUUGAUa 2 8 443 464 [mm9:3:68697529-68697550:-] 0.5825 120 6 -7.78 -0.1295 MIMAT0004575 mmu-miR-295* 68259 Ift80 cuuCACACGGGGUGUAAACUca || ||: :: :|||||| auuGUAUGUAUUCUAUUUGAua 3 20 443 464 [mm9:3:68697529-68697550:-] 0.5825 135 0 -8.12 -0.1127 MIMAT0000377 mmu-miR-299* 68259 Ift80 uacauacacccugccAUUUGGu |||||| aguuguuuuuuuuuuUAAACCa 2 8 973 994 [mm9:3:68696999-68697020:-] 0.5063 120 6 -7.54 -0.1940 MIMAT0004579 mmu-miR-302a* 68259 Ift80 cgUUCAUGUUGGUGCAAAU-UCa | |||:| | | ||||| || agAUGUAUAUCGAAGUUUAUAGu 2 21 542 564 [mm9:3:68697429-68697451:-] 0.5023 128 0 -10.08 -0.3356 MIMAT0004624 mmu-miR-15a* 68259 Ift80 acucCGUCGUGUCAUAC-CGGAc ||| |:::| ||| |||| ugccGCAACGUGG-AUGAGCCUa 2 19 679 700 [mm9:3:68697293-68697314:-] 0.5109 120 0 -14.97 -0.1152 MIMAT0004633 mmu-miR-27a* 68259 Ift80 acGAGUGUUCGUCGAUUCGGGa :||| || :|:||||||| cgUUCAGAA-AGGUUAAGCCCa 2 21 222 242 [mm9:3:68697751-68697771:-] 0.5264 158 7 -21.52 -0.9764 MIMAT0000551 mmu-miR-323-3p 68259 Ift80 ucuccagcuGGCACAUUACAc | ||||||||| guuaaauuuCAGUGUAAUGUu 2 13 1482 1502 [mm9:3:68696491-68696511:-] 0.5172 152 7 -11.46 -0.9174 MIMAT0000556 mmu-miR-324-3p 68259 Ift80 ucgucGUGGACCCCGUCACc |||| ||||||| guauuCACC---GGCAGUGa 2 16 628 644 [mm9:3:68697349-68697365:-] 0.5093 143 7 -17.33 -0.2737 MIMAT0004643 mmu-miR-331-5p 68259 Ift80 ccuagggacccuggUAUGGAuc |||||| agguuaagcccaaaAUACCUua 3 9 231 252 [mm9:3:68697741-68697762:-] 0.5264 120 0 -12.46 -0.1299 MIMAT0004660 mmu-miR-19a* 68259 Ift80 caUCACGUUGAUACGUUUUGAu ||| :|| | | ||||||| agAGUCUAAAUUUUCAAAACUc 2 21 1108 1129 [mm9:3:68696864-68696885:-] 0.5337 164 7 -9.47 -0.4838 MIMAT0004661 mmu-miR-28* 68259 Ift80 aggucgucgaguguuAGAUCAc |||||| caucauuucuauuuuUCUAGUc 2 8 261 282 [mm9:3:68697711-68697732:-] 0.5264 120 6 -8.94 -0.2193 MIMAT0004664 mmu-miR-214* 68259 Ift80 cgugUCGUUCACAUCUGU-CCGu ||:|:|| |||||| ||| gugaAGUAGGU-UAGACAUGGCa 2 19 717 738 [mm9:3:68697255-68697276:-] 0.5089 132 0 -22.68 -0.1402 MIMAT0005444 mmu-miR-218-2* 68259 Ift80 gcgccacgaacugucUUGGUAc |||||| uuguuuuuuuuuuuaAACCAUa 2 8 975 996 [mm9:3:68696997-68697018:-] 0.5063 120 6 -7.16 -0.1743 MIMAT0004670 mmu-miR-7a* 68259 Ift80 auaccgucugacacuAAACAAc |||||| auacaugcuuucuacUUUGUUa 2 8 1464 1485 [mm9:3:68696508-68696529:-] 0.5172 120 6 -3.98 -0.1633 MIMAT0002106 mmu-miR-465a-5p 68259 Ift80 agUGUAGUC--ACGGUAAGAUUUAu :| |||| | | ||||||| ggGCCUCAGACUUAGAGUCUAAAUu 2 22 1095 1119 [mm9:3:68696874-68696898:-] 0.5337 148 7 -11.47 -0.2986 MIMAT0002107 mmu-miR-466a-3p 68259 Ift80 agAAUACACACGCACAUACAUAu |||| | || ||||||||| ugUUAU-UCUGAUUGUAUGUAUu 2 22 433 454 [mm9:3:68697539-68697560:-] 0.5825 167 7 -11.39 -0.8508 MIMAT0002108 mmu-miR-467a-1* 68259 Ift80 cacauccacACACAUACAUAUa ||| ||||||| augguacaaUGUAGAUGUAUAu 2 14 530 551 [mm9:3:68697442-68697463:-] 0.5322 149 7 -11.93 -0.3623 MIMAT0002108 mmu-miR-467a-1* 68259 Ift80 cacauccACACACAUACAUAua || ||||||||| guuauucUGAUUGUAUGUAUuc 3 16 434 455 [mm9:3:68697538-68697559:-] 0.5825 139 0 -9.47 -0.1094 MIMAT0002110 mmu-miR-469 68259 Ift80 ccugugguuCUAGUUACUUUCUCCGu |:|||: |||||||| aguucuucuGGUCAG-AAAAGAGGCa 2 18 785 809 [mm9:3:68697184-68697208:-] 0.5053 155 7 -21.28 -0.4422 MIMAT0002889 mmu-miR-532-5p 68259 Ift80 ugcCAGGAUGUGAGUUCCGUAc ||| | : ||||||| ccaGUCAAAAGAAAAAGGCAUu 2 20 152 173 [mm9:3:68697820-68697841:-] 0.5264 143 7 -12.40 -0.9164 MIMAT0003120 mmu-miR-483* 68259 Ift80 uucugcccuccccUCCUCACu ||||||| uuaucuaugcccaAGGAGUGu 2 9 311 331 [mm9:3:68697662-68697682:-] 0.5264 140 7 -12.00 -0.4542 MIMAT0003170 mmu-miR-541 68259 Ift80 ucacacUGGUUGUAGUCU-UAGGGAa | ::||| |||| |||||| uuuaacAGUGACA-CAGACAUCCCUc 2 20 1194 1218 [mm9:3:68696775-68696799:-] 0.5337 129 6 -20.30 -0.5422 MIMAT0004789 mmu-miR-450a-3p 68259 Ift80 uacUUACGUUUCGUAGGGGUUa ||| :|| |||||||||| uuuAAUAUAAUGCAUCCCCAAg 2 20 1159 1180 [mm9:3:68696813-68696834:-] 0.5337 175 7 -19.81 -0.4280 MIMAT0003189 mmu-miR-291b-5p 68259 Ift80 ccucucccggaggugAAACUAg |||||| auuguauguauucuaUUUGAUa 2 8 443 464 [mm9:3:68697529-68697550:-] 0.5825 120 6 -9.31 -0.1295 MIMAT0003726 mmu-miR-675-3p 68259 Ift80 ugacucgccaauccCGUAUGUc ||||||| agugcacuugccuaGCAUACAu 2 9 111 132 [mm9:3:68697861-68697882:-] 0.5264 140 7 -8.72 -0.1590 MIMAT0003741 mmu-miR-674* 68259 Ift80 aacaAGACUCUACC---CUCGACAc || ||| || ||||||| ucucUCAUAGAAGGGUUGAGCUGUg 2 19 649 673 [mm9:3:68697320-68697344:-] 0.5093 149 7 -19.07 -0.1015 MIMAT0003469 mmu-miR-690 68259 Ift80 aaaccaacacucggaUCGGAAa |||||| guauucuuauaauaaAGCCUUg 2 8 395 416 [mm9:3:68697577-68697598:-] 0.5825 120 6 -8.15 -0.1290 MIMAT0004189 mmu-miR-693-3p 68259 Ift80 aaUGUC-GGUGUAGACUUU-CGACg |:|| :||||| ||| |||| uuAUAGUUCACAUAACAAACGCUGg 2 22 558 582 [mm9:3:68697411-68697435:-] 0.5023 128 0 -17.71 -0.4077 MIMAT0003474 mmu-miR-694 68259 Ift80 gaagUCCGUUGUAAAAGUc || | | ||||||| uuagAGUCUAAAUUUUCAa 2 16 1106 1124 [mm9:3:68696869-68696887:-] 0.5337 151 7 -6.42 -0.7713 MIMAT0003478 mmu-miR-467b* 68259 Ift80 cacaaccacACACAUACAUAUa ||| ||||||| augguacaaUGUAGAUGUAUAu 2 14 530 551 [mm9:3:68697442-68697463:-] 0.5322 149 7 -14.11 -0.3623 MIMAT0003478 mmu-miR-467b* 68259 Ift80 caCAACCACAC--ACAUACAUAua ||| | || ||||||||| auGUUAUUCUGAUUGUAUGUAUuc 3 21 432 455 [mm9:3:68697538-68697561:-] 0.5825 143 0 -11.79 -0.1094 MIMAT0003480 mmu-miR-297b-5p 68259 Ift80 ugUACAAGUA-CGUGUGUA-UGUa | |||:|| |: ||||| ||| cgAAGUUUAUAGUUCACAUAACAa 2 21 552 575 [mm9:3:68697418-68697441:-] 0.5023 131 0 -12.94 -0.4504 MIMAT0004827 mmu-miR-297b-3p 68259 Ift80 auacccAUACACACAUACAUAu | || ||||||||| uguuauUCUGAUUGUAUGUAUu 2 17 433 454 [mm9:3:68697539-68697560:-] 0.5825 156 7 -9.57 -0.8508 MIMAT0003742 mmu-miR-455 68259 Ift80 cacAUAUAC-GGGC-ACCUGACg | |||| :| ||||||| ucuUUUAUGAAAUGUUGGACUGu 2 19 1368 1390 [mm9:3:68696603-68696625:-] 0.5337 144 7 -17.49 -0.7393 MIMAT0003493 mmu-miR-703 68259 Ift80 aagaaaggaagacUUCCAAaa |||||| uuaccacaauaaaAAGGUUaa 3 9 1542 1562 [mm9:3:68696431-68696451:-] 0.5077 120 0 -5.45 -0.1810 MIMAT0003498 mmu-miR-708* 68259 Ift80 gaucuucgagugucAGAUCAac |||||| aucauuucuauuuuUCUAGUcu 3 9 262 283 [mm9:3:68697710-68697731:-] 0.5264 120 0 -8.64 -0.1778 MIMAT0003504 mmu-miR-713 68259 Ift80 cgACACACGGAAGUCACGu ||| :|||||||: uuUGUUAAAUUUCAGUGUa 2 18 1479 1497 [mm9:3:68696496-68696514:-] 0.5172 133 0 -16.63 -0.1624 MIMAT0003507 mmu-miR-500 68259 Ift80 acuUGGGAA-CGGGUCCACGUAa :|:||| | : ||||||| ccuGCUCUUAGAAUUGGUGCAUu 2 20 1234 1256 [mm9:3:68696737-68696759:-] 0.5337 150 7 -18.25 -0.6729 MIMAT0003508 mmu-miR-501-5p 68259 Ift80 aaagugggucccugUUUCCUAa ||||||| cguuguccucuuuaAAAGGAUu 2 9 930 951 [mm9:3:68697042-68697063:-] 0.5063 140 7 -14.25 -0.8100 MIMAT0003509 mmu-miR-501-3p 68259 Ift80 guuuAGGAACGGGCCCACGUAa ||:| | : ||||||| cugcUCUUAGAAUUGGUGCAUu 2 19 1235 1256 [mm9:3:68696737-68696758:-] 0.5337 150 7 -14.15 -0.6729 MIMAT0003512 mmu-miR-450b-3p 68259 Ift80 uacgUACGUUUUA-CAAGGGUUa |||| || |||||||| agaaAUGCCCCAUAGUUCCCAAu 2 19 1335 1357 [mm9:3:68696636-68696658:-] 0.5337 157 7 -16.76 -0.5453 MIMAT0004210 mmu-miR-804 68259 Ift80 agguccACUCCUUGUUG-AGUGu | :|||| ||| |||| cacuaaUUGGGAAAAACAUCACc 2 17 1271 1293 [mm9:3:68696700-68696722:-] 0.5337 124 0 -14.59 -0.4460 MIMAT0004237 mmu-miR-742 68259 Ift80 aaaUGGGUCGUAC-CACCGAAAg |||| |: || ||||||| augACCCUGUUUGUCUGGCUUUa 2 20 1140 1162 [mm9:3:68696831-68696853:-] 0.5337 158 7 -18.35 -0.5439 MIMAT0004238 mmu-miR-743a 68259 Ift80 agaugagucgaaccACAGAAAg ||||||| aaagaaaaaggcauUGUCUUUg 2 9 159 180 [mm9:3:68697813-68697834:-] 0.5264 140 7 -7.42 -0.5160 MIMAT0004840 mmu-miR-743b-3p 68259 Ift80 agauaagUCGUACUACAGAAAg :|||| ||||||| agaaaaaGGCAU--UGUCUUUg 2 16 161 180 [mm9:3:68697813-68697832:-] 0.5264 148 7 -10.66 -0.4858 MIMAT0004851 mmu-miR-883b-3p 68259 Ift80 uaugacUCUCUACAACGU-CAAu | ||||| |||| ||| cuaaccAAAGAUG-UGCAUGUUu 2 17 31 52 [mm9:3:68697941-68697962:-] 0.5226 122 0 -12.19 -0.4822 MIMAT0004864 mmu-miR-297a* 68259 Ift80 auacccAUACACACAUACAUAu | || ||||||||| uguuauUCUGAUUGUAUGUAUu 2 17 433 454 [mm9:3:68697539-68697560:-] 0.5825 156 7 -9.57 -0.8508 MIMAT0004865 mmu-miR-297c 68259 Ift80 ugUACAUGUA-CGUGUGUA-UGUa | || :|| |: ||||| ||| cgAAGUUUAUAGUUCACAUAACAa 2 21 552 575 [mm9:3:68697418-68697441:-] 0.5023 123 0 -9.60 -0.4471 MIMAT0004866 mmu-miR-297c* 68259 Ift80 auacccAUACACACAUACAUAu | || ||||||||| uguuauUCUGAUUGUAUGUAUu 2 17 433 454 [mm9:3:68697539-68697560:-] 0.5825 156 7 -9.57 -0.8508 MIMAT0004871 mmu-miR-465b-5p 68259 Ift80 gucuAGUCGUGG---UAAGAUUUAu |||| ||: | ||||||| ggccUCAG-ACUUAGAGUCUAAAUu 2 19 1096 1119 [mm9:3:68696874-68696897:-] 0.5337 147 7 -13.36 -0.3037 MIMAT0004873 mmu-miR-465c-5p 68259 Ift80 gucuAGUCGCGG--UAAGAUUUAu |||| :: | ||||||| ggccUCAGACUUAGAGUCUAAAUu 2 19 1096 1119 [mm9:3:68696874-68696897:-] 0.5337 145 7 -13.36 -0.3011 MIMAT0004876 mmu-miR-466b-3p 68259 Ift80 agAAUACACACGCACAUACAUAu |||| | || ||||||||| ugUUAU-UCUGAUUGUAUGUAUu 2 22 433 454 [mm9:3:68697539-68697560:-] 0.5825 167 7 -11.39 -0.8508 MIMAT0005453 mmu-miR-466b-3-3p 68259 Ift80 agAAUACACACGCACAUACAUAa |||| | || ||||||||| ugUUAU-UCUGAUUGUAUGUAUu 2 22 433 454 [mm9:3:68697539-68697560:-] 0.5825 167 7 -12.12 -0.8508 MIMAT0004878 mmu-miR-466c-3p 68259 Ift80 agAAUACACACGCACAUACAUAu |||| | || ||||||||| ugUUAU-UCUGAUUGUAUGUAUu 2 22 433 454 [mm9:3:68697539-68697560:-] 0.5825 167 7 -11.39 -0.8508 MIMAT0004880 mmu-miR-466e-3p 68259 Ift80 agAAUACACACGCACAUACAUAu |||| | || ||||||||| ugUUAU-UCUGAUUGUAUGUAUu 2 22 433 454 [mm9:3:68697539-68697560:-] 0.5825 167 7 -11.39 -0.8508 MIMAT0004884 mmu-miR-466h 68259 Ift80 auGUGUGUUCGUGUACGUGUGu :||| :||| ||||||||| auUACA-GAGCUCAUGCACACu 2 21 1254 1274 [mm9:3:68696719-68696739:-] 0.5337 170 7 -23.56 -0.5251 MIMAT0004887 mmu-miR-467d* 68259 Ift80 cacauccacACACAUACAUAUa ||| ||||||| augguacaaUGUAGAUGUAUAu 2 14 530 551 [mm9:3:68697442-68697463:-] 0.5322 149 7 -11.93 -0.3623 MIMAT0004887 mmu-miR-467d* 68259 Ift80 cacauccACACACAUACAUAua || ||||||||| guuauucUGAUUGUAUGUAUuc 3 16 434 455 [mm9:3:68697538-68697559:-] 0.5825 139 0 -9.47 -0.1094 MIMAT0004892 mmu-miR-568 68259 Ift80 cacacAUAUGUAAAUAUGUa ||||:: ||||||| ugacuUAUAUG-UUAUACAu 2 16 1451 1469 [mm9:3:68696524-68696542:-] 0.5172 153 7 -8.64 -0.4200 MIMAT0004897 mmu-miR-654-5p 68259 Ift80 uguguacaagacGU-CGAAUGGu || ||||||| --------gggcCACGCUUACCu 2 11 1 15 [mm9:3:68697978-68697992:-] 0.4867 141 7 -11.10 -0.2463 MIMAT0004898 mmu-miR-654-3p 68259 Ift80 uuccacuacCAGUCGUCUGUAu | || ||||||| uuuaacaguGACA-CAGACAUc 2 14 1194 1214 [mm9:3:68696779-68696799:-] 0.5337 143 7 -12.90 -0.2423 MIMAT0004931 mmu-miR-466d-3p 68259 Ift80 gaUACACACGCACAUACAUAu || | || ||||||||| uuAU-UCUGAUUGUAUGUAUu 2 20 435 454 [mm9:3:68697539-68697558:-] 0.5825 157 7 -10.73 -0.8508 MIMAT0004935 mmu-miR-872* 68259 Ift80 uccuccgaugacGUUAUCAAGu | ||||||| cauagaaaugccCCAUAGUUCc 2 11 1332 1353 [mm9:3:68696640-68696661:-] 0.5337 142 7 -8.30 -0.1754 MIMAT0004935 mmu-miR-872* 68259 Ift80 uccuccgaugacguUAUCAAGu ||||||| guauaucgaaguuuAUAGUUCa 2 9 546 567 [mm9:3:68697426-68697447:-] 0.5023 140 7 -9.23 -0.9660 MIMAT0004938 mmu-miR-875-3p 68259 Ift80 guAUCGGAGUC-AUAAAAGUCc || ::|| | | ||||||| uuUA-UUUCUGUUUUUUUCAGu 2 20 366 386 [mm9:3:68697607-68697627:-] 0.5545 148 7 -10.71 -1.1212 MIMAT0004861 mmu-miR-877 68259 Ift80 gggacgcgguaGAGGAGAUg :||||||| aagacuagugcUUCCUCUAg 2 10 86 105 [mm9:3:68697888-68697907:-] 0.4981 141 7 -17.22 -0.1807 MIMAT0004940 mmu-miR-511 68259 Ift80 acUCACGUCUCGUUUUCCGUa ||| | || |||||||| ccAGUCAAAAGAAAAAGGCAu 2 20 152 172 [mm9:3:68697821-68697841:-] 0.5264 163 7 -14.18 -0.9023 MIMAT0005294 mmu-miR-467e* 68259 Ift80 uauauccacACACAUACAUAUa ||| ||||||| augguacaaUGUAGAUGUAUAu 2 14 530 551 [mm9:3:68697442-68697463:-] 0.5322 149 7 -11.93 -0.3623 MIMAT0005294 mmu-miR-467e* 68259 Ift80 uauauccACACACAUACAUAua || ||||||||| guuauucUGAUUGUAUGUAUuc 3 16 434 455 [mm9:3:68697538-68697559:-] 0.5825 139 0 -9.47 -0.1094 MIMAT0005830 mmu-miR-466l 68259 Ift80 uuAUACACACGUACAUAA-AUAu | || ||:||||||| ||| auUCUGAUUGUAUGUAUUCUAUu 2 21 437 459 [mm9:3:68697534-68697556:-] 0.5825 136 0 -10.13 -1.0234 MIMAT0005830 mmu-miR-466l 68259 Ift80 uuauacacACGUACAUAAAUau || :| |||||| uaaagccuUGAGU-UAUUUAca 3 15 407 427 [mm9:3:68697566-68697586:-] 0.5825 124 0 -1.21 -0.1014 MIMAT0005832 mmu-miR-669g 68259 Ift80 uaguacaguuGUGUAUGUUACGu :|: |||||||: agccuugaguUAUUUACAAUGUa 2 14 410 432 [mm9:3:68697561-68697583:-] 0.5825 133 0 -11.74 -0.1394 MIMAT0005835 mmu-miR-1-2-as 68259 Ift80 accUUACAUUUC--UUCAUACAu ||| | | | ||||||| uuaAAUUUUAUGUUUAGUAUGUu 2 19 1520 1542 [mm9:3:68696451-68696473:-] 0.5125 145 7 -10.19 -1.0291 MIMAT0005835 mmu-miR-1-2-as 68259 Ift80 accuUACAUUUCUUCAUACAu || || | | |||||| aguuAUUUACA-AUGUAUGUu 2 18 417 436 [mm9:3:68697557-68697576:-] 0.5825 123 6 -5.35 -0.1096 MIMAT0005835 mmu-miR-1-2-as 68259 Ift80 accuuacauuucuuCAUACAu |||||| auguuauucugauuGUAUGUa 2 8 432 452 [mm9:3:68697541-68697561:-] 0.5825 120 6 -9.49 -0.1301 MIMAT0005838 mmu-miR-669j 68259 Ift80 acaaacgUACACUCAUAUACGu || | ||||||| uaagaaaAUAUUUCUAUAUGCu 2 16 290 311 [mm9:3:68697682-68697703:-] 0.5264 143 7 -6.28 -0.7273 MIMAT0005839 mmu-miR-669f 68259 Ift80 uaugcacacACACAUACAUAUAc ||| |||||||| augguacaaUGUAGAUGUAUAUc 2 15 530 552 [mm9:3:68697441-68697463:-] 0.5322 154 7 -10.49 -0.4747 MIMAT0005840 mmu-miR-669i 68259 Ift80 cauacgUACACACAUAUACGu || | | ||||||| aagaaaAUAUUUCUAUAUGCu 2 16 291 311 [mm9:3:68697682-68697702:-] 0.5264 151 7 -6.15 -0.7273 MIMAT0005848 mmu-miR-466j 68259 Ift80 aauGUGUGUACGUGUACGUGUGu :||| | || ||||||||| cauUACAGA-GCUCAUGCACACu 2 21 1253 1274 [mm9:3:68696719-68696740:-] 0.5337 166 7 -21.75 -0.5251 MIMAT0005849 mmu-miR-1191 68259 Ift80 auccCG-AUGUAUCAUUCUGAc || || || ||||||| aaaaGCAUA-AUUUUAAGACUa 2 18 72 92 [mm9:3:68697901-68697921:-] 0.4981 146 7 -8.91 -0.8984 MIMAT0005852 mmu-miR-1194 68259 Ift80 ucCUAGAUCGUCAAUGAG-UAAg | | | |: ||||||| ||| uuGUUGUUGUUGUUACUCUAUUg 2 21 1020 1042 [mm9:3:68696951-68696973:-] 0.5063 128 0 -8.74 -0.6797 MIMAT0005854 mmu-miR-467g 68259 Ift80 uauAU-ACACACACAUACAUAu || | || ||||||||| uguUAUUCUGAUUGUAUGUAUu 2 19 433 454 [mm9:3:68697539-68697560:-] 0.5825 157 7 -9.67 -0.8508 MIMAT0007871 mmu-miR-1892 68259 Ift80 uaGGAGGGAGGGCAGGGGUUUa | |||| | ||||||||| ugCAUCCC-CAAGUCCCCAAAa 2 21 1169 1189 [mm9:3:68696804-68696824:-] 0.5337 162 7 -26.18 -0.8411 MIMAT0007875 mmu-miR-1898 68259 Ift80 cuaGGGGACACUU----GGAACUGGa :|||| | || |||||||| acaUCCCUCUAAAGUGCCCUUGACCc 2 20 1210 1235 [mm9:3:68696758-68696783:-] 0.5337 154 7 -25.48 -0.1473 MIMAT0007876 mmu-miR-1907 68259 Ift80 ugGAGGUCUAGGAGACGACGAg | |::| || :||||||| aaCGCUGG--CCAUUGCUGCUu 2 21 846 865 [mm9:3:68697128-68697147:-] 0.5053 149 7 -18.74 -0.1162 MIMAT0009409 mmu-miR-1944 68259 Ift80 uuaGUCUUGAACUGUAAGUCGUGUCUc :|| ::| ||||| :||||||| aagUAG-GUUAGACAU--GGCACAGAc 2 25 720 743 [mm9:3:68697250-68697273:-] 0.5089 159 7 -19.63 -0.1169 MIMAT0009419 mmu-miR-669m 68259 Ift80 uauacaaacACACCUACAUAUa ||| |||||||| augguacaaUGUAGAUGUAUAu 2 14 530 551 [mm9:3:68697442-68697463:-] 0.5322 157 7 -13.04 -0.3623 MIMAT0009419 mmu-miR-669m 68259 Ift80 uaUACA--AACAC--ACCUACAUAua |||| || || || |||||| guAUGUUAUUCUGAUUGUAUGUAUuc 3 21 430 455 [mm9:3:68697538-68697563:-] 0.5825 138 0 -11.95 -0.1094 MIMAT0009422 mmu-miR-1951 68259 Ift80 aucGGUGUGGUCAGAGGUGAUg |:| : | :||||||| agcCUAGGAGAACUUCCACUAc 2 20 695 716 [mm9:3:68697277-68697298:-] 0.5126 143 7 -20.62 -0.1275 MIMAT0009424 mmu-miR-1953 68259 Ift80 gucUUCGGACUCUUGAAAGGGu || | | | ||||||| gaaAAACAUCACCCCUUUCCCu 2 20 1281 1302 [mm9:3:68696691-68696712:-] 0.5337 147 7 -13.04 -0.1718 MIMAT0009424 mmu-miR-1953 68259 Ift80 gucuucggacucuuGAAAGGgu |||||| aaaugauaaauuuuCUUUCCag 3 9 953 974 [mm9:3:68697019-68697040:-] 0.5063 120 0 -10.70 -0.1101 MIMAT0009430 mmu-miR-1957 68259 Ift80 cagUAUACGAGAUGGUGac :|||| |:|||||| uuaGUAUG-UUUACCACaa 3 17 1533 1550 [mm9:3:68696443-68696460:-] 0.5077 138 0 -14.10 -0.1060 MIMAT0009431 mmu-miR-1958 68259 Ift80 ugaaugacgaAGGUGAAAGGau |:: |||||| aaaugauaaaUUUUCUUUCCag 3 13 953 974 [mm9:3:68697019-68697040:-] 0.5063 124 0 -7.38 -0.1090 MIMAT0009432 mmu-miR-1959 68259 Ift80 gagGUGACU-CG-AUGUAGGGg || ||| | ||||||| uaaCAGUGACACAGACAUCCCu 2 18 1196 1217 [mm9:3:68696776-68696797:-] 0.5337 143 7 -17.90 -0.2794 MIMAT0009442 mmu-miR-1969 68259 Ift80 ugGGUACAAUUUCAGAGGUAGaa || | | || :|||||| uaCCUUAUAUAA--UUCCAUCau 3 22 246 266 [mm9:3:68697727-68697747:-] 0.5264 126 0 -11.22 -0.1082 MIMAT0009442 mmu-miR-1969 68259 Ift80 ugggUACAAUUUCA---GAGGUA-GAa || |||||| :||||| || auaaAUUGUAAAGUAUCUUCCAUACUu 2 20 466 492 [mm9:3:68697501-68697527:-] 0.5825 122 0 -12.85 -0.9800 MIMAT0009444 mmu-miR-1970 68259 Ift80 guUUCGGAUAGGGGUCACUGUGu ||||:| |: ||||||||| aaAAGCUUUUUAACAGUGACACa 2 22 1186 1208 [mm9:3:68696785-68696807:-] 0.5337 173 7 -27.20 -0.8153 MIMAT0009460 mmu-miR-1982.1 68259 Ift80 gacacccucuUGUAUCCCACUCu :| |:||||||| ggccauugcuGCUUGGGGUGAGa 2 14 852 874 [mm9:3:68697119-68697141:-] 0.5053 149 7 -18.92 -0.1252 MIMAT0011221 mmu-miR-2145 68259 Ift80 uuggUC-CGGG--CUGGGACGa || |||| |||||||| cuaaAGUGCCCUUGACCCUGCu 2 16 1218 1239 [mm9:3:68696754-68696775:-] 0.5337 153 7 -26.32 -0.2818 MIMAT0012772 mmu-miR-599 68259 Ift80 caAACUAUU-UGACUGUGUu || ||| | ||||||| gcUUUUUAACAGUGACACAg 2 18 1190 1209 [mm9:3:68696784-68696803:-] 0.5337 152 7 -11.01 -0.2321 MIMAT0015640 mmu-miR-3470a 68259 Ift80 ggUCGGACCAGAU--GUUUC-ACu ||::||| ||| ||||| || cuAGUUUGGACUAACCAAAGAUGu 2 20 21 44 [mm9:3:68697949-68697972:-] 0.4859 130 0 -19.12 -0.1174 MIMAT0000123 mmu-miR-1 68259 Ift80 uauguaugAAGAAAUGUAAGGu || |||||||| aaggagugUUGAGUACAUUCCa 2 15 323 344 [mm9:3:68697649-68697670:-] 0.5264 146 7 -14.85 -0.8677 MIMAT0000124 mmu-miR-15b 68259 Ift80 acauUUGGUAC---UACACGACGAu ||| || || ||||||| guguAACGCUGGCCAU-UGCUGCUu 2 19 842 865 [mm9:3:68697128-68697151:-] 0.5053 143 7 -16.83 -0.1076 MIMAT0000126 mmu-miR-27b 68259 Ift80 cgUCUUGAAUCGGUGA--CACUu ||||||| ||||| |||| ggAGAACUU--CCACUACGUGAa 2 20 701 721 [mm9:3:68697272-68697292:-] 0.5126 120 0 -20.30 -0.2641 MIMAT0000128 mmu-miR-30a 68259 Ift80 gaAGGU-CAGCUCCUACAAAUGu |::| ||: || |||||||| auUUUAUGUUUAGUAUGUUUACc 2 21 1524 1546 [mm9:3:68696447-68696469:-] 0.5125 163 7 -13.02 -0.7066 MIMAT0000130 mmu-miR-30b 68259 Ift80 ucgacuCACAUCCUACAAAUGu || ||| |||||||| uuuuauGUUUAGUAUGUUUACc 2 17 1525 1546 [mm9:3:68696447-68696468:-] 0.5077 164 7 -10.83 -0.6891 MIMAT0000142 mmu-miR-9 68259 Ift80 agUAUG-UC-GAUCU-AUUGGUUUCu | || || :|:|| ||||||||| ccAAACUAGUUUGGACUAACCAAAGa 2 22 16 41 [mm9:3:68697952-68697977:-] 0.4859 162 7 -20.57 -0.6946 MIMAT0000144 mmu-miR-132 68259 Ift80 gcuGGUAC-CGAC-AUCUGACAAu ::||| || |:||||||| cuuUUAUGAAAUGUUGGACUGUUc 2 20 1369 1392 [mm9:3:68696601-68696624:-] 0.5337 149 7 -15.66 -0.5436 MIMAT0000148 mmu-miR-136 68259 Ift80 gguaguaguuuUGUUUACCUCa | |||||||| gugagagcccuAGAAAUGGAGa 2 12 869 890 [mm9:3:68697103-68697124:-] 0.5139 147 7 -11.81 -0.3479 MIMAT0000153 mmu-miR-141 68259 Ift80 gguaGAAAUGGUCU---GUCACAau ||||:::| | |||||| ucuaCUUUGUUAAAUUUCAGUGUaa 3 19 1474 1498 [mm9:3:68696495-68696519:-] 0.5172 133 0 -14.62 -0.1469 MIMAT0000225 mmu-miR-195 68259 Ift80 cgguuauaaagacACGACGAu ||||||| uaacgcuggccauUGCUGCUu 2 9 845 865 [mm9:3:68697128-68697148:-] 0.5053 140 7 -13.94 -0.1186 MIMAT0000233 mmu-miR-200b 68259 Ift80 aguaGUAA-UGGUCCGUCA-UAAu :||| ||| |||||| ||| guggUAUUCACC-GGCAGUGAUUa 2 19 625 647 [mm9:3:68697346-68697368:-] 0.5093 127 0 -17.77 -0.1487 MIMAT0000233 mmu-miR-200b 68259 Ift80 aguaguaaugguccGUCAUAau |||||| auuucuguuuuuuuCAGUAUaa 3 9 369 390 [mm9:3:68697603-68697624:-] 0.5545 120 0 -5.57 -0.1359 MIMAT0000235 mmu-miR-202-3p 68259 Ift80 agaaggguacgcgaUAUGGAGa ||||||: agguuaagcccaaaAUACCUUa 2 9 231 252 [mm9:3:68697741-68697762:-] 0.5264 124 0 -11.64 -0.1299 MIMAT0000236 mmu-miR-203 68259 Ift80 gaucaccAGGAUUUGUAAAGug ||| | |||||| auauaauUCC--AUCAUUUCua 3 16 252 271 [mm9:3:68697722-68697741:-] 0.5264 124 0 -7.07 -0.1887 MIMAT0000239 mmu-miR-206 68259 Ift80 ggugugugAAGGAAUGUAAGGu || |||||||| aaggagugUUGAGUACAUUCCa 2 15 323 344 [mm9:3:68697649-68697670:-] 0.5264 146 7 -13.19 -0.8677 MIMAT0000248 mmu-miR-30e 68259 Ift80 gaAGGU-CAGUUCCUACAAAUGu |::| ||: || |||||||| auUUUAUGUUUAGUAUGUUUACc 2 21 1524 1546 [mm9:3:68696447-68696469:-] 0.5125 163 7 -13.02 -0.7066 MIMAT0000366 mmu-miR-290-5p 68259 Ift80 uuucACGGGGGUAUCA-AACUCa ||||| : ||| ||||| ucuaUGCCCAAGGAGUGUUGAGu 2 19 314 336 [mm9:3:68697657-68697679:-] 0.5264 126 0 -19.70 -0.3105 MIMAT0000514 mmu-miR-30c 68259 Ift80 cgacucuCACAUCCUACAAAUGu || ||| |||||||| auuuuauGUUUAGUAUGUUUACc 2 17 1524 1546 [mm9:3:68696447-68696469:-] 0.5125 164 7 -10.81 -0.6992 MIMAT0000515 mmu-miR-30d 68259 Ift80 gaAGGU-CAGCCCCUACAAAUGu |::| ||: | |||||||| auUUUAUGUUUAGUAUGUUUACc 2 21 1524 1546 [mm9:3:68696447-68696469:-] 0.5125 155 7 -10.85 -0.7103 MIMAT0000519 mmu-miR-200a 68259 Ift80 uguAGCAAUGGUCUGUCACAau |:|||| |||||| acuUUGUUAAAUUUCAGUGUaa 3 20 1477 1498 [mm9:3:68696495-68696516:-] 0.5172 131 0 -13.57 -0.1455 MIMAT0000526 mmu-miR-15a 68259 Ift80 guGUUUGGUAAUACACGACGAu | ::|||| ||||||| cgCUGGCCAU----UGCUGCUu 2 21 848 865 [mm9:3:68697128-68697145:-] 0.5053 143 7 -18.36 -0.1076 MIMAT0000527 mmu-miR-16 68259 Ift80 gcgguuauaaaugcACGACGAu ||||||| guaacgcuggccauUGCUGCUu 2 9 844 865 [mm9:3:68697128-68697149:-] 0.5053 140 7 -14.85 -0.1186 MIMAT0000538 mmu-miR-31 68259 Ift80 gucgAUACGGUCGUAGA-ACGGa |||||: :|||| |||| ucuaUAUGCU--UAUCUAUGCCc 2 19 302 322 [mm9:3:68697671-68697691:-] 0.5264 123 0 -15.43 -0.7563 MIMAT0000548 mmu-miR-322 68259 Ift80 agguuUUGU-ACU--UAACGACGAc |||: ||: ||||||||| uguguAACGCUGGCCAUUGCUGCUu 2 18 841 865 [mm9:3:68697128-68697152:-] 0.5053 155 7 -16.43 -0.1174 MIMAT0000657 mmu-miR-200c 68259 Ift80 agguaGUAAUGGGCCGUCA-UAAu :||| |||||||| ||| cguggUAUUCACCGGCAGUGAUUa 2 19 624 647 [mm9:3:68697346-68697369:-] 0.5093 134 0 -20.35 -0.1487 MIMAT0000657 mmu-miR-200c 68259 Ift80 agguAGUAAUGGGCCGUCAUAau || | ::: |||||| uauuUCUGUUUUUUUCAGUAUaa 3 20 368 390 [mm9:3:68697603-68697625:-] 0.5545 123 0 -7.10 -0.1359 MIMAT0000659 mmu-miR-212 68259 Ift80 accggcAC-UGAC-CUCUGACAAu || | || :||||||| cuuuuaUGAAAUGUUGGACUGUUc 2 17 1369 1392 [mm9:3:68696601-68696624:-] 0.5337 142 7 -10.74 -0.5472 MIMAT0000671 mmu-miR-224 68259 Ift80 uugccuuggugaucACUGAAu |||||| gaaaucuaagcaauUGACUUa 2 8 1437 1457 [mm9:3:68696536-68696556:-] 0.5172 120 6 -8.85 -0.1094 MIMAT0000677 mmu-miR-7a 68259 Ift80 ugUUGUUUUAG-----UGAUCA-GAAGGu |:|| |||: |||||| ||||| aaAGCAUAAUUUUAAGACUAGUGCUUCCu 2 22 73 101 [mm9:3:68697892-68697920:-] 0.4981 128 0 -17.23 -0.2593 MIMAT0000677 mmu-miR-7a 68259 Ift80 uguuguuuuagugaucAGAAGGu |||||| uauaaauuguaaaguaUCUUCCa 2 8 465 487 [mm9:3:68697506-68697528:-] 0.5825 120 6 -11.38 -0.1670 MIMAT0000678 mmu-miR-7b 68259 Ift80 uguUGU-UUUAGUGUU---CAGAAGGu |:| ||||:::|| |||||| gauAUAUAAAUUGUAAAGUAUCUUCCa 2 21 461 487 [mm9:3:68697506-68697532:-] 0.5825 126 6 -13.56 -0.1670 MIMAT0000678 mmu-miR-7b 68259 Ift80 ugUUGUUUUAG-----UGUUCA-GAAGGu |:|| |||: || ||| ||||| aaAGCAUAAUUUUAAGACUAGUGCUUCCu 2 22 73 101 [mm9:3:68697892-68697920:-] 0.4981 120 0 -12.42 -0.2593 MIMAT0000704 mmu-miR-361 68259 Ift80 cauggggaccucUAAGACUAuu |||||||| acaauguauguuAUUCUGAUug 3 11 425 446 [mm9:3:68697547-68697568:-] 0.5825 130 0 -10.05 -0.1054 MIMAT0000748 mmu-miR-383 68259 Ift80 ucgguguCAGUGGAAGACUAGa ||:| |||||||: aauguauGUUA--UUCUGAUUg 2 16 427 446 [mm9:3:68697547-68697566:-] 0.5825 132 0 -10.14 -0.1043 MIMAT0004745 mmu-miR-384-5p 68259 Ift80 uguaACGGAUCCUUAACAAAUGu ||::||| | ||||||| uuuaUGUUUAGUA--UGUUUACc 2 20 1526 1546 [mm9:3:68696447-68696467:-] 0.5077 156 7 -12.48 -0.6640 MIMAT0001092 mmu-miR-376b 68259 Ift80 uuCACCUACAAGGAGAU-ACUa || | |||| ||||| ||| uuGUUGUUGUUACUCUAUUGAc 2 20 1023 1044 [mm9:3:68696949-68696970:-] 0.5063 135 0 -10.95 -0.5255 MIMAT0001537 mmu-miR-429 68259 Ift80 ugCCGUAA-UGGUCUGUCA-UAAu ||:||| ||| |:|||| ||| guGGUAUUCACC-GGCAGUGAUUa 2 21 625 647 [mm9:3:68697346-68697368:-] 0.5093 133 0 -23.08 -0.1487 MIMAT0001537 mmu-miR-429 68259 Ift80 ugccguaauggucuGUCAUAau |||||| auuucuguuuuuuuCAGUAUaa 3 9 369 390 [mm9:3:68697603-68697624:-] 0.5545 120 0 -7.12 -0.1359 MIMAT0003169 mmu-miR-539 68259 Ift80 uguGUGGUUCCUAUUAAAGAGg | ||| | ||||||||| uccCUCCACUG-UAAUUUCUCa 2 20 1298 1318 [mm9:3:68696675-68696695:-] 0.5337 157 7 -14.34 -0.9964 MIMAT0003182 mmu-miR-494 68259 Ift80 cuccaAAGGGCACA-UACAAAGu ||:| |||| ||||||| uuaaaUUUCAGUGUAAUGUUUCa 2 18 1483 1505 [mm9:3:68696488-68696510:-] 0.5172 164 7 -17.30 -1.1642 MIMAT0003182 mmu-miR-494 68259 Ift80 cucCAA-AGGGC--ACAUACA-AAGu ||| |:|:| ||||||| ||| uauGUUAUUCUGAUUGUAUGUAUUCu 2 20 431 456 [mm9:3:68697537-68697562:-] 0.5825 129 0 -13.66 -1.1429 MIMAT0003453 mmu-miR-497 68259 Ift80 auguuuggugucacACGACGAc ||||||| guaacgcuggccauUGCUGCUu 2 9 844 865 [mm9:3:68697128-68697149:-] 0.5053 140 7 -15.97 -0.1174 MIMAT0003456 mmu-miR-495 68259 Ift80 uucUUC-ACGUGGUACAAACAAa ||| ||:: |||||||||| ccaAAGAUGUG-CAUGUUUGUUu 2 20 35 56 [mm9:3:68697937-68697958:-] 0.5226 164 7 -18.86 -0.5404 MIMAT0003456 mmu-miR-495 68259 Ift80 uucUUCACGU--GGUACAAACAAa :||| || ||| ||||||| guuGAGUACAUUCCA-GUUUGUUu 2 20 330 352 [mm9:3:68697641-68697663:-] 0.5264 156 7 -14.28 -0.3505 MIMAT0003456 mmu-miR-495 68259 Ift80 uucuucacgugguacAAACAAa |||||| auacaugcuuucuacUUUGUUa 2 8 1464 1485 [mm9:3:68696508-68696529:-] 0.5172 120 6 -6.36 -0.1633 MIMAT0005850 mmu-miR-1192 68259 Ift80 uuaAACCAGACAAACAAACAAa || ||:|||||||||||| cagUUUGUUUGUUUGUUUGUUc 2 20 343 364 [mm9:3:68697629-68697650:-] 0.5264 183 7 -21.47 -0.8191 MIMAT0005850 mmu-miR-1192 68259 Ift80 uuaaaCCAGACAAACAAACAAa | | || |||||||| ccaaaGAUGUGCAUGUUUGUUu 2 18 35 56 [mm9:3:68697937-68697958:-] 0.5226 153 7 -10.74 -0.5511 MIMAT0005850 mmu-miR-1192 68259 Ift80 uuaaaccagacaaacAAACAAa |||||| auacaugcuuucuacUUUGUUa 2 8 1464 1485 [mm9:3:68696508-68696529:-] 0.5172 120 6 -2.88 -0.1649

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061869 Ift80 Mus musculus 68259

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ift80 mmu-miR-469 beg:791 end:810 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& |.|||. ||||||||| &5' ---------GGTCAGA-AAAGAGGCA 3' Ift80 mmu-miR-669d beg:750 end:769 pic:3' TGTATATGTA-CGTGTGTGTTCA 5'& |.|. || |||||||| &5' -----TGCGGGGCTCACACAAG- 3' Ift80 mmu-miR-1959 beg:1202 end:1218 pic:3' GAGGTGACTCGATGTAGGGG 5'& ||| |||||||. &5' ---CACAG----ACATCCCT 3' Ift80 mmu-miR-206 beg:325 end:345 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& . .| ||||||||| &5' ----GTGTTGAG-TACATTCCA 3' Ift80 mmu-miR-1 beg:333 end:345 pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||||||||| &5' -------------TACATTCCA 3' Ift80 mmu-miR-483star beg:321 end:331 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& ||||||| &5' -------------AGGAGTG- 3' Ift80 mmu-miR-669m beg:536 end:552 pic:3' TATACAAACACACCTACATATA 5'& ||| ||||||||| &5' ---------TGTAGATGTATAT 3' Ift80 mmu-miR-654-3p beg:1198 end:1214 pic:3' TTCCACTACCAGTCGTCTGTAT 5'& |||| || ||||||| &5' ---GTGA----CA-CAGACAT- 3' Ift80 mmu-miR-1892 beg:1170 end:1189 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& |||| | ||||||||| &5' ----TCCC-CAAGTCCCCAAA- 3' Ift80 mmu-miR-1898 beg:1220 end:1235 pic:3' CTAGGGGACACTTGGAACTGGA 5'& ||| |||||||| &5' --------GTGC-CCTTGACC- 3' Ift80 mmu-miR-1953 beg:1292 end:1302 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||||||| &5' --------------CTTTCCC- 3' Ift80 mmu-miR-214star beg:803 end:822 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& .||||| .||||||| &5' ----GGCAAGAG-GGACAGGC- 3' Ift80 mmu-miR-1944 beg:727 end:743 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||||| .||||||| &5' -----------GACAT--GGCACAGA- 3' Ift80 mmu-miR-654-5p beg:0 end:15 pic:3' TGTGTACAAGACGT--CGAATGGT 5'& || ||||||| &5' -----------GCCACGCTTACC- 3' Ift80 mmu-miR-495 beg:339 end:353 pic:3' TTCTTCACGTGGTACAAACAAA 5'& ||| |||||||| &5' ----------CCA-GTTTGTTT 3' Ift80 mmu-miR-1192 beg:342 end:361 pic:3' TTAAACCAGACAAACAAACAAA 5'& ||.||||||||||||| &5' ------GTTTGTTTGTTTGTTT 3' Ift80 mcmv-miR-m22-1 beg:515 end:529 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& ||| .|||||| &5' -------GGTT----TGGGGAA 3' Ift80 mghv-miR-M1-3 beg:0 end:15 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& | || || |||.||||| &5' --GGGCCAC----GCTTACCTC 3' Ift80 mmu-let-7astar beg:529 end:551 pic:3' CCTTTC-TGT--CATCTAACATATC 5'& .| ||| ||||| |||||| &5' ----GGTACAATGTAGA-TGTATA- 3' Ift80 mmu-let-7astar beg:886 end:909 pic:3' CCTTTCTGTCAT--CTAACATATC 5'& ||.|| ..||. |.|||||||| &5' -GAGAG-TGGTGATGGTTGTATAG 3' Ift80 mmu-let-7bstar beg:529 end:551 pic:3' CCCTTCCGT----CATCCAACATATC 5'& ||.| |||| |||||| &5' -----GGTACAATGTAGA-TGTATA- 3' Ift80 mmu-let-7bstar beg:888 end:909 pic:3' CCCTTCCGTCAT--CCAACATATC 5'& | ||. |||||||||| &5' ------GTGGTGATGGTTGTATAG 3' Ift80 mmu-let-7c-1star beg:888 end:909 pic:3' CCTTTCGAT-CTTCCAACATGTC 5'& .||. || |||||||.|| &5' ---GAGTGGTGATGGTTGTATAG 3' Ift80 mmu-let-7c-2star beg:529 end:551 pic:3' CCTTTC-TGT--CATCTAACATATC 5'& .| ||| ||||| |||||| &5' ----GGTACAATGTAGA-TGTATA- 3' Ift80 mmu-let-7c-2star beg:886 end:909 pic:3' CCTTTCTGTCAT--CTAACATATC 5'& ||.|| ..||. |.|||||||| &5' -GAGAG-TGGTGATGGTTGTATAG 3' Ift80 mmu-let-7e beg:0 end:15 pic:3' TTGATATGTTGGA--GGATGGAGT 5'& ..|| |.|||||| &5' --------GGCCACGCTTACCTC- 3' Ift80 mmu-let-7fstar beg:529 end:551 pic:3' CCCTTCCGT----TATCTAACATATC 5'& ||.| .|||| |||||| &5' -----GGTACAATGTAGA-TGTATA- 3' Ift80 mmu-let-7fstar beg:886 end:909 pic:3' CCCTT-CCGTTATCTAACATATC 5'& ||. || ||.| |||||||| &5' --GAGTGGTGATGG-TTGTATAG 3' Ift80 mmu-miR-105 beg:99 end:120 pic:3' TGGTGT-TCGTAGACTCGTGAACC 5'& |.| | .|.| ||||||| &5' -CTAGATGGTAGT---GCACTTG- 3' Ift80 mmu-miR-1186b beg:622 end:653 pic:3' CACCA--------CGTACGGAAATTAGGGT 5'& ||||| ||| |. |||.||.| &5' GTGGTATTCACCGGCA-GTGATTAGTCTC- 3' Ift80 mmu-miR-1186b beg:245 end:263 pic:3' CACCACGTACGGAA---ATTAGGGT 5'& |||| ||||.||| &5' ----------CCTTATATAATTCCA 3' Ift80 mmu-miR-1188 beg:1257 end:1276 pic:3' AGGAC-CGGGTTGGAGTGTGGT 5'& | ||.|| |||||.| &5' ----GAGCTCATG--CACACTA 3' Ift80 mmu-miR-1191 beg:73 end:92 pic:3' ATCCCGATGTATC---ATTCTGAC 5'& .|||| ||||||| &5' -------GCATAATTTTAAGACT- 3' Ift80 mmu-miR-1199 beg:1093 end:1111 pic:3' GGCGCGCTGGCC-CTGAGTCT 5'& |.|| ||||.||| &5' ------GGCCTCAGACTTAGA 3' Ift80 mmu-miR-1199 beg:748 end:778 pic:3' GGCGCGCTGG-------CCCTGAGTCT 5'& |.||| |.|. || ||||.|| &5' CTGCGGGGCTCACACAAGGCACTCGGA 3' Ift80 mmu-miR-122 beg:327 end:345 pic:3' GTTTGTGGTAACA-GTGTGAGGT 5'& .||| .|||.|||| &5' --------GTTGAGTACATTCCA 3' Ift80 mmu-miR-132 beg:1371 end:1392 pic:3' GCTGGTACCG-AC-ATCTGACAAT 5'& ..||| || |.||||||| &5' ---TTATGAAATGTTGGACTGTT- 3' Ift80 mmu-miR-134 beg:785 end:810 pic:3' GGGGAGACCAGTTGG-TCAGTGT 5'& .|.||||||||. || .|| &5' -TCTTCTGGTCAGAAAAGAGGCA 3' Ift80 mmu-miR-135astar beg:585 end:608 pic:3' GCGGTGCCG-AGGTTAGG-GATAT 5'& ||.|.||. ||| ||| ||| &5' -GCTATGGTATCC-ATCAGCTA-- 3' Ift80 mmu-miR-136 beg:869 end:890 pic:3' GGTAGTAGTTTTG-----TTTACCTCA 5'& |.|.| |||||||| &5' --------AGAGCCCTAGAAATGGAG- 3' Ift80 mmu-miR-146a beg:768 end:792 pic:3' TTGGGTACCTTAAG---TCAAGAGT 5'& ||.| ||| ||||||. &5' -ACTC--GGATTAAGTAAGTTCTT- 3' Ift80 mmu-miR-146b beg:772 end:792 pic:3' TCGGATACCTTAAG---TCAAGAGT 5'& ||| ||||||. &5' -------GGATTAAGTAAGTTCTT- 3' Ift80 mmu-miR-146bstar beg:129 end:146 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||| ||||.|||| &5' --------TGAGGCCCTGGGGC 3' Ift80 mmu-miR-15a beg:845 end:865 pic:3' GTGTTTGGTAATACACGACGAT 5'& |.| .|||| ||||||| &5' CGCTGGCCAT----TGCTGCT- 3' Ift80 mmu-miR-15b beg:846 end:865 pic:3' ACATTTGGTACTACACGACGAT 5'& | ..|||| ||||||| &5' -GCTGGCCAT----TGCTGCT- 3' Ift80 mmu-miR-16 beg:850 end:865 pic:3' GCGGTTATAAATGCACGACGAT 5'& |||| ||||||| &5' -GCCAT--------TGCTGCT- 3' Ift80 mmu-miR-18a beg:1346 end:1367 pic:3' GATAGACGTGATCTACGTGGAAT 5'& .|. || |||.||||| &5' --GTTCCCAAT--ATGTACCTT- 3' Ift80 mmu-miR-18b beg:1345 end:1367 pic:3' GATTGTCGTGATC--TACGTGGAAT 5'& |.||. |||.||||| &5' ---ATAGTTCCCAATATGTACCTT- 3' Ift80 mmu-miR-1903 beg:814 end:834 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& |||| .||.||.|| &5' -----CAGGCCCTGGAGGAGGG 3' Ift80 mmu-miR-1907 beg:845 end:866 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& | | | || .|||||||. &5' --CGCTGG--CCATTGCTGCTT 3' Ift80 mmu-miR-192 beg:714 end:731 pic:3' CCGACAGTTAAGTATCCAGTC 5'& || || .|||||.|| &5' ----GTGAA---GTAGGTTAG 3' Ift80 mmu-miR-1929 beg:866 end:884 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |. |.|| ||||||| &5' ----GTG----AGAGCCCTAGAA 3' Ift80 mmu-miR-1940 beg:1286 end:1306 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& .|||| ||. |||||| &5' -------TCACCC-CTTTC-CCTCCA- 3' Ift80 mmu-miR-1940 beg:0 end:19 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& | |||| ||.| |||||| &5' ----GGGCCACG--CTTA--CCTCCA- 3' Ift80 mmu-miR-1941-5p beg:1291 end:1318 pic:3' TTCGGAGACAT-GGT--CG-TAGAGGGA 5'& |||.| ||| |. ||.||.| &5' ---CCTTTCCCTCCACTGTAATTTCTC- 3' Ift80 mmu-miR-194 beg:1011 end:1036 pic:3' AGGTGT--ACCTCAACGACAATGT 5'& | | || ||||.|||||| &5' -CTGCTTTTGTTGTTGTTGTTAC- 3' Ift80 mmu-miR-1944 beg:1402 end:1423 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& .||| |||. |||||| &5' ---TAGAGTTTGGATA----CACAGA- 3' Ift80 mmu-miR-1948 beg:106 end:126 pic:3' GACATGC-TCACGAG-ACGGATTT 5'& | ||||| | ||||||. &5' ------GTAGTGCACTTGCCTAG- 3' Ift80 mmu-miR-1951 beg:695 end:717 pic:3' ATCGGTGTGGTCA--GAGGTGATG 5'& ||| .| || .|||||||| &5' --GCC-TAGGAGAACTTCCACTAC 3' Ift80 mmu-miR-1951 beg:1286 end:1309 pic:3' ATCGGTGTGGTCA--GAGGTGATG 5'& .||| || |||||||. &5' ---TCACCCCTTTCCCTCCACTG- 3' Ift80 mmu-miR-1954 beg:622 end:643 pic:3' TTGTCCCA-GAGTGAGACGTCA 5'& ||. ||| .|||| | ||||| &5' -ACGTGGTATTCAC-CGGCAGT 3' Ift80 mmu-miR-1970 beg:1184 end:1209 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& |||||.| |. |||||||||| &5' -AAAGCTTTTTAACAGTGACACA 3' Ift80 mmu-miR-1982.1 beg:859 end:875 pic:3' GACACCCTCTTGTATCCCACTCT 5'& .| |.|||||||| &5' ----------GCTTGGGGTGAGA 3' Ift80 mmu-miR-1982star beg:1339 end:1357 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||||| .|||||| &5' ---CCCCATAG--TTCCCAA 3' Ift80 mmu-miR-202-3p beg:478 end:494 pic:3' AGAAGGGTACGCGATATGGAGA 5'& |||||| ||||.|. &5' TCTTCC--------ATACTTT- 3' Ift80 mmu-miR-202-3p beg:236 end:252 pic:3' AGAAGGGTACGCGATATGGAGA 5'& |||| ||||||. &5' ----CCCAAA----ATACCTT- 3' Ift80 mmu-miR-207 beg:811 end:832 pic:3' CTCCCTCCTCTCGGT-CCTCTTCG 5'& ||||| .||| ||||.|| &5' -AGGGACA--GGCCCTGGAGGAG- 3' Ift80 mmu-miR-210 beg:1255 end:1273 pic:3' AGTCGGCGACAGTGTGCGTGTC 5'& ||| ||| ||.||||| &5' -CAGA-GCT----CATGCACA- 3' Ift80 mmu-miR-211 beg:815 end:836 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |||| ||| ..|||||| &5' AGGCCCTGGA----GGAGGGAA 3' Ift80 mmu-miR-212 beg:1372 end:1392 pic:3' ACCGGCACTGACC--TCTGACAAT 5'& ||| .||||||| &5' ------TGAAATGTTGGACTGTT- 3' Ift80 mmu-miR-2137 beg:134 end:154 pic:3' GAGGGACCCCGAG--GGCGGCCG 5'& ||||||||||| || || &5' --CCCTGGGGCTCATCC-CC--- 3' Ift80 mmu-miR-2137 beg:746 end:771 pic:3' GAGGGA-CCCCGAG-GGCGGCCG 5'& |||. ||||||| | ||| &5' -TCCTGCGGGGCTCACACAAGGC 3' Ift80 mmu-miR-2145 beg:1219 end:1240 pic:3' TTGGTC-CGGG--CTGGGACGA 5'& || |||| ||||||||| &5' ----AGTGCCCTTGACCCTGCT 3' Ift80 mmu-miR-22star beg:693 end:709 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& ||| |.|||||| &5' --------GCCTA-GGAGAACT 3' Ift80 mmu-miR-25 beg:1489 end:1501 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& ||||.|||| &5' -------------AGTGTAATG 3' Ift80 mmu-miR-27astar beg:220 end:242 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& |.||| || .|.||||||| &5' -GTTCAGAAA-GGTTAAGCCC- 3' Ift80 mmu-miR-2861 beg:804 end:825 pic:3' GGCGGGCGGCG-GTCCGGGG 5'& || | | |||||||. &5' --GCAAGAGGGACAGGCCCT 3' Ift80 mmu-miR-291b-3p beg:1039 end:1066 pic:3' TGTTTGTTTT-ACCT----ACGTGAAA 5'& .|||||. ||| ||||.||| &5' ---GACAAAGTTGGTAAACTGCATTTT 3' Ift80 mmu-miR-291b-3p beg:101 end:120 pic:3' TGTTTGTTTTACC--TACGTGAAA 5'& |.|||| .||||||| &5' -------AGATGGTAGTGCACTT- 3' Ift80 mmu-miR-293 beg:666 end:678 pic:3' TGTGATGTTTGAGACGCCGTGA 5'& |||.||||| &5' ------------CTGTGGCAC- 3' Ift80 mmu-miR-296-5p beg:129 end:148 pic:3' TGTCCTAACTCCC---CCCCGGGA 5'& ||||| |||||.| &5' -------TGAGGCCCTGGGGCTC- 3' Ift80 mmu-miR-296-5p beg:752 end:762 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||||.| &5' -------------GGGGCTC- 3' Ift80 mmu-miR-30a beg:1522 end:1546 pic:3' GAAGGT-CAGCTCCTACAAATGT 5'& ||..| ||. || |||||||| &5' -TTTTATGTTTAGTATGTTTAC- 3' Ift80 mmu-miR-30b beg:1528 end:1546 pic:3' TCGACTCACATCCTACAAATGT 5'& || ||| |||||||| &5' ------GTTTAGTATGTTTAC- 3' Ift80 mmu-miR-30b beg:37 end:59 pic:3' TCGACT-CACAT-CCTACAAATGT 5'& || ||| | |||||.| &5' ----GATGTGCATGTTTGTTTGC- 3' Ift80 mmu-miR-30c beg:1528 end:1546 pic:3' CGACTCTCACATCCTACAAATGT 5'& || ||| |||||||| &5' -------GTTTAGTATGTTTAC- 3' Ift80 mmu-miR-30c-2star beg:1338 end:1356 pic:3' TCTCATTTGTCGGAA----GAGGGTC 5'& ||| .||||| &5' ----------GCCCCATAGTTCCCA- 3' Ift80 mmu-miR-30d beg:1529 end:1546 pic:3' GAAGGTCAGCCCCTACAAATGT 5'& |..||| |||||||| &5' --TTTAGT-----ATGTTTAC- 3' Ift80 mmu-miR-30e beg:1522 end:1546 pic:3' GAAGGT-CAGTTCCTACAAATGT 5'& ||..| ||. || |||||||| &5' -TTTTATGTTTAGTATGTTTAC- 3' Ift80 mmu-miR-31star beg:715 end:739 pic:3' CTACCGTTATACAACC-GTATCGT 5'& .|| |.|| ||| | |||.||| &5' -GTGA-AGTAGGTTAGACATGGCA 3' Ift80 mmu-miR-31star beg:888 end:911 pic:3' CTACCGTTATACAACCGTATCGT 5'& .||| ||. ||| |.|||||| &5' -GTGGTGATG-GTT-GTATAGCA 3' Ift80 mmu-miR-322 beg:843 end:865 pic:3' AGGTTTTGT-ACT--TAACGACGAC 5'& |||. ||. ||||||||| &5' -----AACGCTGGCCATTGCTGCT- 3' Ift80 mmu-miR-324-3p beg:622 end:644 pic:3' TCGTCGTGGACC-CCGTCACC 5'& | |.|.. ||||||| &5' -GTGGTATTCACCGGCAGTG- 3' Ift80 mmu-miR-331-5p beg:130 end:156 pic:3' CCTA-GGGACCCTG-GTATGGATC 5'& || |||||||.| ||| || || &5' -GAGGCCCTGGGGCTCATCCCCAG 3' Ift80 mmu-miR-350 beg:910 end:927 pic:3' CTTTCACATACCCGAAACACTT 5'& .||||. ||||||| &5' --------GTGGGTGTTGTGAA 3' Ift80 mmu-miR-367 beg:1479 end:1500 pic:3' AGTGGTAACGATT-----TCACGTTAA 5'& |||.||| ||||.||| &5' ------TTGTTAAATTTCAGTGTAAT- 3' Ift80 mmu-miR-376c beg:183 end:206 pic:3' TGCACTTTAA-AGGAGATACAA 5'& ||| |..|||.|||| &5' --GTGTATGAGTTTTCTGTGTT 3' Ift80 mmu-miR-383 beg:778 end:798 pic:3' TCGGTGTCAGTGGAAGACTAGA 5'& ||. |||. ||||||.|| &5' AGTA--AGTT--CTTCTGGTC- 3' Ift80 mmu-miR-384-5p beg:1527 end:1546 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||..||| ||||||| &5' ----TGTTTAGTA--TGTTTAC- 3' Ift80 mmu-miR-384-5p beg:41 end:59 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||| ||||||.| &5' ----TGCATGT---TTGTTTGC- 3' Ift80 mmu-miR-433 beg:1418 end:1439 pic:3' TGTGGCTCCTCGGGT--AGTACTA 5'& || |..|| |||||| &5' -----GATATGTTCAATTCATGA- 3' Ift80 mmu-miR-450a-3p beg:1335 end:1358 pic:3' TAC-TTACGTTTCG-TAGGGGTTA 5'& | ||||| .|.|||||| &5' --GAAATGCCCCATAGTTCCCAAT 3' Ift80 mmu-miR-450a-3p beg:1167 end:1180 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& |||||||||| &5' -----------GCATCCCCAA- 3' Ift80 mmu-miR-450a-3p beg:144 end:157 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||||||||.| &5' ------------CATCCCCAGT 3' Ift80 mmu-miR-450b-3p beg:1336 end:1358 pic:3' TACGTACGTTTTA-CAAGGGTTA 5'& |||| ||||||||| &5' ----ATGCCCCATAGTTCCCAAT 3' Ift80 mmu-miR-455 beg:1370 end:1391 pic:3' CACATATACGG-GC-ACCTGACG 5'& |||| .| |||||||. &5' -----TATGAAATGTTGGACTGT 3' Ift80 mmu-miR-465b-5p beg:1098 end:1119 pic:3' GTCTAGTCGTGGTA---AGATTTAT 5'& |||| ||. ||||||| &5' ----TCAG-ACTTAGAGTCTAAAT- 3' Ift80 mmu-miR-465c-5p beg:1098 end:1119 pic:3' GTCT-AGTCGCGGTAAGATTTAT 5'& |||| |.|| ||||||| &5' CAGACTTAGAG----TCTAAAT- 3' Ift80 mmu-miR-467e beg:1250 end:1270 pic:3' TGTATATGTA-CGAGTGTGAATA 5'& .||| |||| |||||..| &5' GCAT-TACAGAGCTCATGC---- 3' Ift80 mmu-miR-488 beg:1173 end:1199 pic:3' CTGGTTCTTTG----TCGGAAAGTT 5'& ||||| |||.|||.|| &5' --CCAAGTCCCCAAAAGCTTTTTAA 3' Ift80 mmu-miR-493 beg:118 end:141 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||| |||.||| ||| ||| &5' CCTAGCATACATGAGGCCCT--- 3' Ift80 mmu-miR-495 beg:35 end:57 pic:3' TTCTTCACGTGGTACAAACAAA 5'& |||| ||||| ||||||||| &5' AAGATGTGCA---TGTTTGTTT 3' Ift80 mmu-miR-497 beg:846 end:865 pic:3' ATGTTTGGTGTCACACGACGAC 5'& .| .|||. ||||||| &5' -GCTGGCCAT----TGCTGCT- 3' Ift80 mmu-miR-500 beg:1234 end:1257 pic:3' ACTTGGGAA-CGGGTCCACGTAA 5'& .|.||| | |||||||| &5' ---GCTCTTAGAATTGGTGCATT 3' Ift80 mmu-miR-501-3p beg:1236 end:1257 pic:3' GTTTAGGAACGGGCCCACGTAA 5'& ||.| | . |||||||| &5' ----TCTTAGAATTGGTGCATT 3' Ift80 mmu-miR-501-5p beg:929 end:952 pic:3' AAAGTGGGTCCCTGTTTCCTAA 5'& | .|| |||||||| &5' --TTGTCCTCTTTAAAAGGATT 3' Ift80 mmu-miR-503 beg:841 end:865 pic:3' GACGTCATGACAAG-GGCGACGAT 5'& ||.| .||| | ..|||||| &5' -TGTAACGCTGGCCATTGCTGCT- 3' Ift80 mmu-miR-511 beg:151 end:173 pic:3' ACTCACGTC-TCGTTTTCCGTA 5'& ||| || || ||||||||| &5' --AGT-CAAAAGAAAAAGGCAT 3' Ift80 mmu-miR-511 beg:791 end:810 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& .|| |||| ||.||||| &5' --GGT-CAGAA-AAGAGGCA- 3' Ift80 mmu-miR-539 beg:1298 end:1318 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& | ||| .||||||||| &5' ---CTCCACT-GTAATTTCTC- 3' Ift80 mmu-miR-542-5p beg:1072 end:1082 pic:3' AGCACTGTACTACTAGGGGCTC 5'& ||||.|| &5' --------------TCCCTGA- 3' Ift80 mmu-miR-592 beg:1196 end:1210 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& || |||||||. &5' ---------CAG--TGACACAG- 3' Ift80 mmu-miR-599 beg:1199 end:1210 pic:3' CAAACTATTTGACTGTGTT 5'& |||||||. &5' -----------TGACACAG 3' Ift80 mmu-miR-654-3p beg:1408 end:1427 pic:3' TTCCACTACCA--GTCGTCTGTAT 5'& ||| || ||||.||. &5' -------TGGATACA-CAGATATG 3' Ift80 mmu-miR-669a beg:1254 end:1279 pic:3' TGTACTTG--TACGTGTGTGTTGA 5'& ||| ||.| |||||||| .||.| &5' ACA-GAGCTCATGCACAC-TAATT 3' Ift80 mmu-miR-669e beg:750 end:772 pic:3' TACTTGTA-CGTGTGTGTTCTGT 5'& .|. || ||||||||.|| &5' ----GCGGGGCTCACACAAGGCA 3' Ift80 mmu-miR-669g beg:522 end:543 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& | || .|||||||.| &5' -----GGAAAATGGTACAATGTA 3' Ift80 mmu-miR-669h-5p beg:1250 end:1271 pic:3' CGTGA-GTTGATATGTGGGTACGTA 5'& |||.| ||. .|.|||||| &5' GCATTACAGA-----GCTCATGCA- 3' Ift80 mmu-miR-669i beg:39 end:59 pic:3' CATACGTACACACATATACGT 5'& |.||||||| ||| ||| &5' -TGTGCATGTTTGTT--TGC- 3' Ift80 mmu-miR-669j beg:430 end:453 pic:3' ACAAACGTAC--ACTCATATACGT 5'& ||. ||| |.||||.| &5' ----TGTTATTCTGATTGTATGTA 3' Ift80 mmu-miR-669k beg:530 end:551 pic:3' AACGTACGCACATATACGTAT 5'& |.| |||| |||.||| &5' --GTACAA-TGTAGATGTATA 3' Ift80 mmu-miR-669o beg:725 end:747 pic:3' TGTATTTGTA-CGTGTGTGTTGAT 5'& ||.|||| ||||| ||. | &5' ---TAGACATGGCACAGACGTC-- 3' Ift80 mmu-miR-673-3p beg:804 end:828 pic:3' CCACGTG--TCTTGAGTCGGGGCCT 5'& ||| .|.|| .||||.||| &5' ---GCAAGAGGGACA-GGCCCTGGA 3' Ift80 mmu-miR-673-5p beg:656 end:675 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& |||| . ||||||||. &5' ----AAGGGTT-GAGCTGTGG- 3' Ift80 mmu-miR-674star beg:658 end:674 pic:3' AACAAGACTCTACCCTCGACAC 5'& |.| |||||||| &5' -------GGGTT--GAGCTGTG 3' Ift80 mmu-miR-677 beg:1127 end:1141 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& || ||||||.| &5' -----------TCCTCACTGGA 3' Ift80 mmu-miR-684 beg:515 end:532 pic:3' AACTGAACTTCCCTTTTGA 5'& | ||| |||||||. &5' --GGTTTG--GGGAAAAT- 3' Ift80 mmu-miR-686 beg:789 end:811 pic:3' AGAAGTGGCAGACC--------CTTCGTTA 5'& ||||| ||.|||| &5' ---------TCTGGTCAGAAAAGAGGCAA- 3' Ift80 mmu-miR-742 beg:1140 end:1162 pic:3' AAATGGGTCGTACC-ACCGAAAG 5'& |||| |. || ||||||| &5' ---ACCCTGTTTGTCTGGCTTT- 3' Ift80 mmu-miR-743a beg:188 end:209 pic:3' AGATGAGTCGAAC--CACAGAAAG 5'& | ||.|| ||||.||| &5' -----TGAGTTTTCTGTGTTTTT- 3' Ift80 mmu-miR-767 beg:575 end:596 pic:3' ACGAGTC-TGTTGGTACCACGT 5'& ||| .| |||.|.||||| &5' -GCTGGGAACAGCTATGGT--- 3' Ift80 mmu-miR-770-3p beg:743 end:764 pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& ||| | || .|||.||| &5' -CAGTCCTGCG--GGGCTCAC- 3' Ift80 mmu-miR-7b beg:459 end:488 pic:3' TGTTGTTTTAGTGTTC---AGAAGGT 5'& |.| |||| .|| ||||||| &5' ATATATAAATTGTAAAGTATCTTCCA 3' Ift80 mmu-miR-871 beg:165 end:185 pic:3' GTACTGACCGTGATT-AGACTTAT 5'& ||||.|. |.|||||| &5' -------GGCATTGTCTTTGAATA 3' Ift80 mmu-miR-876-5p beg:1428 end:1445 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& |||||. ||||||.| &5' -----ATTCAT---GAAATCTA 3' Ift80 mmu-miR-877 beg:1198 end:1221 pic:3' GGGACGCG------GTAGAGGAGATG 5'& |.| |||| |||||| &5' ----GTGACACAGACATC-CCTCTA- 3' Ift80 mmu-miR-878-5p beg:596 end:618 pic:3' ACAGAACTGTAG-----GTTGATCTAT 5'& |||| |||.|||||| &5' --------CATCAGCTACAATTAGATA 3' Ift80 mmu-miR-879 beg:1083 end:1102 pic:3' CCGAATCTCGAT-ATTCGGAGA 5'& ||| |..||||| &5' -----AGAATATTTGGGCCTC- 3' Ift80 mmu-miR-881 beg:788 end:810 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& |||. |||||||||| .|| &5' TCTGGTCAGAAAAGAGGCA--- 3' Ift80 mmu-miR-883b-5p beg:1382 end:1403 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& |||||.| | |||||.||| &5' -GACTGTT-CA-ATTCTTAGT- 3' Ift80 mmu-miR-883b-5p beg:370 end:388 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& |||.| ||.|||||| &5' ---CTGTTT----TTTTCAGTA 3' Ift80 mmu-miR-9 beg:19 end:42 pic:3' AGTATGTC-GATCT-ATTGGTTTCT 5'& .|| .|.|| |||||||||| &5' -----TAGTTTGGACTAACCAAAGA 3' Ift80 mmu-miR-9star beg:1144 end:1163 pic:3' TGAAAGCCAATAGATCGAAATA 5'& .| ||.|||.|||||| &5' -----TGTTTGTCTGGCTTTA- 3' Ift80 mmu-miR-466b-3-3p beg:438 end:455 pic:3' AGAATACACACGCACATACATAA 5'& || |||||||||| &5' ---------TGATTGTATGTATT 3' Ift80 mmu-miR-450a-3p beg:1177 end:1188 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& .||||||| &5' -------------GTCCCCAA- 3' Ift80 mmu-miR-877 beg:87 end:105 pic:3' GGGACGCGGTAGAGGAGATG 5'& |. |.||. ||||||| &5' -CTAGTGCT---TCCTCTA- 3' Ift80 mmu-miR-466h beg:1257 end:1274 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& .||| ||||||||| &5' -------GAGCTCATGCACAC- 3' Ift80 mmu-miR-466j beg:1259 end:1274 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& || ||||||||| &5' ----------GCTCATGCACAC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ift80 RAID00104428 mmu-miR-344h-3p miRNA MIMAT0022384 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00112307 mmu-miR-1249-5p miRNA MIMAT0014804 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00207224 mmu-miR-497a-5p miRNA MIMAT0003453 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00266901 mmu-miR-383-5p miRNA MIMAT0000748 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00370853 mmu-miR-361-5p miRNA MIMAT0000704 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00445052 mmu-miR-6955-5p miRNA MIMAT0027810 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00508033 mmu-miR-466m-3p miRNA MIMAT0014883 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00568634 mmu-miR-30c-5p miRNA MIMAT0000514 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00679934 mmu-miR-494-3p miRNA MIMAT0003182 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00707239 mmu-miR-450a-2-3p miRNA MIMAT0004789 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00726843 mmu-miR-200b-3p miRNA MIMAT0000233 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00804918 mmu-miR-6989-5p miRNA MIMAT0027880 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00908549 mmu-miR-539-5p miRNA MIMAT0003169 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID00980508 mmu-miR-290a-5p miRNA MIMAT0000366 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01065927 mmu-miR-6481 miRNA MIMAT0027339 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01161467 mmu-miR-212-3p miRNA MIMAT0000659 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01162433 mmu-miR-206-3p miRNA MIMAT0000239 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01324219 mmu-miR-30f miRNA MIMAT0025179 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01358817 mmu-miR-30b-5p miRNA MIMAT0000130 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01461133 mmu-miR-6362 miRNA MIMAT0025106 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01493778 mmu-miR-7665-5p miRNA MIMAT0029836 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01565457 mmu-miR-455-3p miRNA MIMAT0003742 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01673802 mmu-miR-466o-3p miRNA MIMAT0014886 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01785972 mmu-miR-322-5p miRNA MIMAT0000548 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01915415 mmu-miR-1a-3p miRNA MIMAT0000123 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01976180 mmu-miR-7a-5p miRNA MIMAT0000677 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01977873 mmu-miR-1191a miRNA MIMAT0005849 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01989183 mmu-miR-132-3p miRNA MIMAT0000144 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID01991285 mmu-miR-384-5p miRNA MIMAT0004745 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02021689 mmu-miR-16-5p miRNA MIMAT0000527 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02032986 mmu-miR-7074-5p miRNA MIMAT0028054 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02151594 mmu-miR-141-3p miRNA MIMAT0000153 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02245459 mmu-miR-202-3p miRNA MIMAT0000235 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02281863 mmu-miR-30a-5p miRNA MIMAT0000128 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02285286 mmu-miR-7119-3p miRNA MIMAT0028136 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02342079 mmu-miR-30d-5p miRNA MIMAT0000515 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02355598 mmu-miR-376b-3p miRNA MIMAT0001092 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02400106 mmu-miR-136-5p miRNA MIMAT0000148 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02447794 mmu-miR-7229-3p miRNA MIMAT0028427 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02461022 mmu-miR-200c-3p miRNA MIMAT0000657 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02592166 mmu-miR-1892 miRNA MIMAT0007871 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02680010 mmu-miR-31-5p miRNA MIMAT0000538 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02694806 mmu-miR-9-5p miRNA MIMAT0000142 Ift80 mRNA 68259 Prediction 0.2202 Ift80 RAID02706062 mmu-miR-15b-5p miRNA MIMAT0000124 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID02825728 mmu-miR-27b-3p miRNA MIMAT0000126 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03071279 mmu-miR-8103 miRNA MIMAT0031407 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03117738 mmu-miR-30e-5p miRNA MIMAT0000248 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03144503 mmu-miR-1192 miRNA MIMAT0005850 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03198963 mmu-miR-3100-5p miRNA MIMAT0014919 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03201368 mmu-miR-8118 miRNA MIMAT0031424 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03228106 mmu-miR-6411 miRNA MIMAT0025164 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03600073 mmu-miR-669p-3p miRNA MIMAT0014890 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03616052 mmu-miR-429-3p miRNA MIMAT0001537 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03657538 mmu-miR-7078-3p miRNA MIMAT0028063 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03682673 mmu-miR-6947-5p miRNA MIMAT0027794 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03689830 mmu-miR-224-5p miRNA MIMAT0000671 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03708068 mmu-miR-7675-3p miRNA MIMAT0029859 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03731268 mmu-miR-1b-5p miRNA MIMAT0005835 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03745727 mmu-miR-15a-5p miRNA MIMAT0000526 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03777460 mmu-miR-7b-5p miRNA MIMAT0000678 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03882275 mmu-miR-495-3p miRNA MIMAT0003456 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03904872 mmu-miR-200a-3p miRNA MIMAT0000519 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03972550 mmu-miR-203-3p miRNA MIMAT0000236 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID03982835 mmu-miR-195a-5p miRNA MIMAT0000225 Ift80 mRNA 68259 Prediction 0.1828 Ift80 RAID04017426 mmu-miR-216a-3p miRNA MIMAT0017054 Ift80 mRNA 68259 Prediction 0.1828