DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Usp11 ATTTA 37-2802 3041-3045

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004527 mmu-miR-124* 236733 Usp11 uaGUUCCAGGCGACACUUGUGc :::|||:: | ||||||| acUGGGGUUUAC-AUGAACACa 2 21 293 313 [mm9:X:20297319-20297339:+] 0.6307 150 7 -14.69 -1.0583 MIMAT0004535 mmu-miR-150* 236733 Usp11 gauaggggguccggACAUGGUc ||||||| auauguacuuacuaUGUACCAg 2 9 412 433 [mm9:X:20297438-20297459:+] 0.5651 140 7 -16.70 -0.9642 MIMAT0004539 mmu-miR-183* 236733 Usp11 aauaccGGGAAG--CCAUUAAGUg :||||| ||||||| aaucucUCCUUCAUUCUAAUUCAa 2 17 336 359 [mm9:X:20294419-20294442:+] 0.5053 147 7 -13.01 -0.7627 MIMAT0004574 mmu-miR-294* 236733 Usp11 ucuaucccggagGUAAAACUCa ||||||||| gcauucacauaaCAUUUUGAGa 2 11 646 667 [mm9:X:20294729-20294750:+] 0.4968 150 7 -11.87 -0.7960 MIMAT0004574 mmu-miR-294* 236733 Usp11 ucUAUCCCGG-AGGUAAAACUCa :|:|| :: |: ||||||| gaGUGGGUUUGUUGUUUUUGAGa 2 21 497 519 [mm9:X:20297523-20297545:+] 0.5451 147 7 -16.65 -0.8395 MIMAT0000376 mmu-miR-298 236733 Usp11 cccuUCUUGUCGGGAGGAGACGg |||: | : : ||||||| acucAGAG-AUUGUACCUCUGCc 2 20 584 605 [mm9:X:20297610-20297631:+] 0.4962 145 7 -21.48 -0.4522 MIMAT0004578 mmu-miR-300* 236733 Usp11 uguuuCCU-AUUGGAGA-GAAGUu ||| |||:|||| ||||| uaucuGGAUUAAUCUCUCCUUCAu 2 18 326 349 [mm9:X:20294409-20294432:+] 0.5053 136 0 -19.05 -0.7322 MIMAT0004620 mmu-let-7a* 236733 Usp11 ccuuucUGUCAUCUAACAUAUc ::|| ||||||||| uaauuuGUAGCUGAUUGUAUAu 2 17 376 397 [mm9:X:20294459-20294480:+] 0.5053 156 7 -12.20 -0.4748 MIMAT0004620 mmu-let-7a* 236733 Usp11 ccuuucUGUC-AUCU-AACAUAUc |||| ||| ||||||| gucucuACAGAGAGACUUGUAUAu 2 17 242 265 [mm9:X:20294325-20294348:+] 0.5487 154 7 -12.11 -0.6149 MIMAT0004621 mmu-let-7b* 236733 Usp11 cccuucCGUCAUCCAACAUAUc |:|| | ||||||| uaauuuGUAGCUGAUUGUAUAu 2 17 376 397 [mm9:X:20294459-20294480:+] 0.5053 152 7 -9.31 -0.4681 MIMAT0004621 mmu-let-7b* 236733 Usp11 cccuuccgUCAUCCAACAUAUc || : ||||||| cucuacagAGAGACUUGUAUAu 2 15 244 265 [mm9:X:20294327-20294348:+] 0.5487 142 7 -9.12 -0.6223 MIMAT0005439 mmu-let-7c-2* 236733 Usp11 ccuuucUGUCAUCUAACAUAUc ::|| ||||||||| uaauuuGUAGCUGAUUGUAUAu 2 17 376 397 [mm9:X:20294459-20294480:+] 0.5053 156 7 -12.20 -0.4748 MIMAT0005439 mmu-let-7c-2* 236733 Usp11 ccuuucUGUC-AUCU-AACAUAUc |||| ||| ||||||| gucucuACAGAGAGACUUGUAUAu 2 17 242 265 [mm9:X:20294325-20294348:+] 0.5487 154 7 -12.11 -0.6149 MIMAT0004623 mmu-let-7f* 236733 Usp11 cccuucCGUUAUCUAACAUAUc |:|: ||||||||| uaauuuGUAGCUGAUUGUAUAu 2 17 376 397 [mm9:X:20294459-20294480:+] 0.5053 156 7 -11.93 -0.4748 MIMAT0004623 mmu-let-7f* 236733 Usp11 cccuuccgUUAUCU-AACAUAUc :| ||| ||||||| ucucuacaGAGAGACUUGUAUAu 2 15 243 265 [mm9:X:20294326-20294348:+] 0.5487 149 7 -10.01 -0.6260 MIMAT0004628 mmu-miR-21* 236733 Usp11 cuGUCGGGUAGCUGACGACAAc |:| :: | ::||||||| cuCGGGUUCUGAGUUGCUGUUu 2 21 64 85 [mm9:X:20294147-20294168:+] 0.5487 148 7 -15.02 -0.3409 MIMAT0004638 mmu-miR-323-5p 236733 Usp11 cgcuugcgcgGUGCCUGGUGGa ||: ||||||| gcauuaaaagCAU-GACCACCa 2 13 618 638 [mm9:X:20297644-20297664:+] 0.4962 142 7 -17.90 -1.1953 MIMAT0000556 mmu-miR-324-3p 236733 Usp11 ucguCGUGGACCCCGUCACc || ||| ||||||| cuauGCCCCU--GGCAGUGu 2 17 172 189 [mm9:X:20297198-20297215:+] 0.6307 149 7 -16.59 -0.1554 MIMAT0004640 mmu-miR-325 236733 Usp11 aaCUAUCCUCCACGAGU-UAUUu || | || | :||| |||| cgGAGAUGAAGCAUUCACAUAAc 2 21 636 658 [mm9:X:20294719-20294741:+] 0.4968 120 0 -7.09 -0.6948 MIMAT0004660 mmu-miR-19a* 236733 Usp11 cauCACGUUGAUACGUUUUGAu | |:|||| ||||||| cuuGAGUAACUUACCAAAACUg 2 20 570 591 [mm9:X:20294653-20294674:+] 0.4979 159 7 -15.67 -0.4545 MIMAT0004665 mmu-miR-218-1* 236733 Usp11 ccacgaacugccuuGGUACAAa ||||||| aaagcuccagauucCCAUGUUc 2 9 368 389 [mm9:X:20297394-20297415:+] 0.5585 140 7 -11.39 -0.5356 MIMAT0000706 mmu-miR-362-5p 236733 Usp11 uaAGUGUGGAUCCA---AGG-UUCCUAa |::| :| ||| ||| |||||| agUUGCUGUUUGGUACAUCCAAAGGAUa 2 23 75 102 [mm9:X:20294158-20294185:+] 0.5487 121 6 -14.55 -0.5986 MIMAT0000740 mmu-miR-376a 236733 Usp11 ugcACCUAAAAGGAGAUG-CUa || | || :|||||| || guaUGUAAUUGUCUCUACAGAg 2 19 232 253 [mm9:X:20294315-20294336:+] 0.5487 126 0 -13.11 -0.7672 MIMAT0003388 mmu-miR-376b* 236733 Usp11 auugguaucuuccUUAUAGGUg |:|||||| cuucucuguguuaAGUAUCCAu 2 10 344 365 [mm9:X:20297370-20297391:+] 0.6190 129 6 -10.47 -0.1473 MIMAT0002105 mmu-miR-464 236733 Usp11 auagagugucuuauuUGAACCAu ||||||| ccuagaaacccagcuACUUGGUc 2 9 516 538 [mm9:X:20294599-20294621:+] 0.4979 140 7 -11.61 -0.1473 MIMAT0002109 mmu-miR-468 236733 Usp11 gucUGUGUG-CGUGUAGUCAGUAu || :|| :::| ||||||| uguACUUACUAUGUACCAGUCAUa 2 21 415 438 [mm9:X:20297441-20297464:+] 0.5651 151 7 -19.34 -1.0077 MIMAT0002110 mmu-miR-469 236733 Usp11 ccugugguucuAGU-UACUUUCUCCGu ||| | :||||||| guauuacucucUCAGAAAGAAGAGGCc 2 16 145 171 [mm9:X:20297171-20297197:+] 0.6448 146 7 -14.52 -0.2335 MIMAT0005295 mmu-miR-376c* 236733 Usp11 auuuguaucuuccUUAUAGGUg |:|||||| cuucucuguguuaAGUAUCCAu 2 10 344 365 [mm9:X:20297370-20297391:+] 0.6190 129 6 -9.80 -0.1473 MIMAT0003732 mmu-miR-668 236733 Usp11 ccauCAC-CCGGCUCGGC-UCACUGu ||| | ||| | | |||||| cuguGUGUGCCCGUACAGCAGUGACu 2 21 198 223 [mm9:X:20297224-20297249:+] 0.6307 123 6 -18.76 -0.2373 MIMAT0004822 mmu-miR-770-5p 236733 Usp11 gcAC-CGGGUCUGUGCAC-CACGa || |||| :| :||| |||| agUGUGCCCCUGCCUGUGUGUGCc 2 21 185 208 [mm9:X:20297211-20297234:+] 0.6307 123 0 -25.86 -0.1584 MIMAT0015219 mmu-miR-3475 236733 Usp11 aaguuugguacacgGAGGUCu |||||| guauccauaaaaagCUCCAGa 2 8 358 378 [mm9:X:20297384-20297404:+] 0.5585 120 6 -15.73 -0.1560 MIMAT0003895 mmu-miR-764-3p 236733 Usp11 ugucaACGGUGAUACC-GGAGGa | :| :|:||| ||||| cccucUAUCCUUGUGGCCCUCCc 2 18 748 770 [mm9:X:20294831-20294853:+] 0.5712 121 0 -19.45 -0.2319 MIMAT0003740 mmu-miR-674 236733 Usp11 augUGGUGAGGGUAGAGUC-ACg |||| |||| ||||| || gugACCAAACCCACCUCAGAUGa 2 20 805 827 [mm9:X:20294888-20294910:+] 0.6168 135 0 -23.52 -0.4709 MIMAT0003449 mmu-miR-488* 236733 Usp11 aacucucaCGA--UAAUAGACCc ||| ||||||||| caagcaaaGCUAAAUUAUCUGGa 2 14 311 333 [mm9:X:20294394-20294416:+] 0.5053 152 7 -14.10 -1.1549 MIMAT0003461 mmu-miR-683 236733 Usp11 cuccugugucGAAUGUCGUCc | |||||||| ugugugugccCGUACAGCAGu 2 12 199 219 [mm9:X:20297225-20297245:+] 0.6307 147 7 -12.26 -0.2961 MIMAT0003472 mmu-miR-693-5p 236733 Usp11 cuuuUGAAAGCCUACACCGAc :||| | ||||||| aucuGCUUAC--CUGUGGCUu 2 18 396 414 [mm9:X:20294479-20294497:+] 0.5053 142 7 -11.02 -0.2061 MIMAT0003472 mmu-miR-693-5p 236733 Usp11 cuUUUGAAAGCCUACACCGAc |::| || | ||||||| gcAGGC-UUAGUCUGUGGCUa 2 20 107 126 [mm9:X:20297133-20297152:+] 0.6802 149 7 -13.70 -0.6795 MIMAT0003472 mmu-miR-693-5p 236733 Usp11 cuuuugaaagccUACACCGAc :||||||| ccauguucaacaGUGUGGCUu 2 10 382 402 [mm9:X:20297408-20297428:+] 0.5585 141 7 -11.50 -0.5804 MIMAT0004826 mmu-miR-146b* 236733 Usp11 ugguCUUGACUCAGGGAUCCCg | || | :||||||| ----GUACCGUUGUCCUAGGGu 2 19 1 18 [mm9:X:20294084-20294101:+] 0.5490 146 7 -20.43 -0.1493 MIMAT0003499 mmu-miR-709 236733 Usp11 aggAGGACGGAGACGGAGg |: | |||||||||| agaUUGUACCUCUGCCUCc 2 17 590 608 [mm9:X:20297616-20297634:+] 0.4962 160 7 -25.83 -0.4859 MIMAT0003500 mmu-miR-710 236733 Usp11 gaguuGAGAGGGGU-UCUGAACc |||| | | ||||||| auuguCUCUACAGAGAGACUUGu 2 18 239 261 [mm9:X:20294322-20294344:+] 0.5487 152 7 -15.87 -0.6223 MIMAT0003500 mmu-miR-710 236733 Usp11 gaguuGA-GAGGGGUUCUG-AACc || | |||| |||| ||| ccccuCUGCCCCCCCAGACAUUGc 2 18 85 108 [mm9:X:20297111-20297134:+] 0.5885 124 0 -19.55 -0.1524 MIMAT0003508 mmu-miR-501-5p 236733 Usp11 aaagugggucccuGUUUCCUAa |||||||| uguuugguacaucCAAAGGAUa 2 10 81 102 [mm9:X:20294164-20294185:+] 0.5487 145 7 -13.59 -0.5410 MIMAT0003510 mmu-miR-717 236733 Usp11 ucucuuccauagaGACAGACUc |||||||| uaacuuaccaaaaCUGUCUGAa 2 10 576 597 [mm9:X:20294659-20294680:+] 0.4979 145 7 -13.01 -0.9260 MIMAT0004236 mmu-miR-741 236733 Usp11 agAUGUAUCUUACCGUAGAGAGu ||: |:|| | ||||||| auUAUCUGGAUU--AAUCUCUCc 2 22 324 344 [mm9:X:20294407-20294427:+] 0.5053 150 7 -14.10 -0.9146 MIMAT0004236 mmu-miR-741 236733 Usp11 agauguaucuuaccguAGAGAGu |||||| uguaccgcuguauuacUCUCUCa 2 8 136 158 [mm9:X:20297162-20297184:+] 0.6589 120 6 -13.23 -0.1098 MIMAT0004237 mmu-miR-742 236733 Usp11 aaAUGGGUCGUACCACCGAAAg |:|::| | | |||||||| ucUGCUUA-CCU-GUGGCUUUa 2 21 397 416 [mm9:X:20294480-20294499:+] 0.5026 152 7 -15.18 -0.2704 MIMAT0004237 mmu-miR-742 236733 Usp11 aaAUGGGUCGUACCACCGAAAg |:::|| || |||||||| caUGUUCAACAGUGUGGCUUUg 2 21 383 404 [mm9:X:20297409-20297430:+] 0.5585 164 7 -18.25 -0.5308 MIMAT0004238 mmu-miR-743a 236733 Usp11 agAUGAGUCGAACCACAGAAAg ||| |||: ||||||| ugUAC-CAGUCAUAUGUCUUUg 2 21 426 446 [mm9:X:20297452-20297472:+] 0.5796 150 7 -12.98 -1.0173 MIMAT0004840 mmu-miR-743b-3p 236733 Usp11 agauaaGUC-GUACUACAGAAAg ||| ||| |||||||| auguacCAGUCAU-AUGUCUUUg 2 17 425 446 [mm9:X:20297451-20297472:+] 0.5796 157 7 -13.58 -1.0173 MIMAT0004845 mmu-miR-881* 236733 Usp11 ucuACACUGACAAUAGA-GAGAc || || | || ||| |||| ccuUGGGAGUCUUCUCUGCUCUg 2 20 769 791 [mm9:X:20294852-20294874:+] 0.5712 127 0 -12.35 -0.4734 MIMAT0004863 mmu-miR-220 236733 Usp11 uucacagaCUGUGAC-ACCACc | ||||| ||||| gagcgcagGCCACUGAUGGUGu 2 14 417 438 [mm9:X:20294500-20294521:+] 0.5000 121 0 -16.26 -0.1476 MIMAT0004897 mmu-miR-654-5p 236733 Usp11 uguguACAAGACGUCGAAUGGu ||| : | ||||||| cugauUGUAUAUCUGCUUACCu 2 18 386 407 [mm9:X:20294469-20294490:+] 0.5053 149 7 -11.85 -0.4935 MIMAT0004935 mmu-miR-872* 236733 Usp11 uccuccgaugacgUUAUCAAGu :||||||| gguacauccaaagGAUAGUUCa 2 10 86 107 [mm9:X:20294169-20294190:+] 0.5487 141 7 -11.23 -0.4058 MIMAT0004862 mmu-miR-877* 236733 Usp11 acccucCUCCCUCUUCUC-CUGu ||| ||| |||| ||| cauuuuGAGAGAG-AGAGAGACa 2 17 658 679 [mm9:X:20294741-20294762:+] 0.5049 122 0 -18.36 -0.6982 MIMAT0005292 mmu-miR-582-3p 236733 Usp11 aacCCAAGUCAACAAGUUGUCc | ||| |||||||||| ccaGAUUCCCAUGUUCAACAGu 2 20 374 395 [mm9:X:20297400-20297421:+] 0.5585 163 7 -14.83 -0.7957 MIMAT0005830 mmu-miR-466l 236733 Usp11 uuauacacacguacAUAAAUAu ||||||| uccucuccuagucuUAUUUAUg 2 9 224 245 [mm9:X:20297250-20297271:+] 0.6307 140 7 -3.97 -0.4278 MIMAT0005835 mmu-miR-1-2-as 236733 Usp11 accuuacauuucuuCAUACAu |||||| gacaacuucauuuuGUAUGUa 2 8 218 238 [mm9:X:20294301-20294321:+] 0.5487 120 6 -6.86 -0.2066 MIMAT0005839 mmu-miR-669f 236733 Usp11 uaUGCACACACACAUACAUAUAc |: ||| || ||||||| uaAUUUGUAGCUGAUUGUAUAUc 2 22 376 398 [mm9:X:20294459-20294481:+] 0.5053 153 7 -6.45 -0.4561 MIMAT0005839 mmu-miR-669f 236733 Usp11 uaugcacacacacauACAUAUAc ||||||| cucuacagagagacuUGUAUAUa 2 9 244 266 [mm9:X:20294327-20294349:+] 0.5487 140 7 -7.21 -1.0160 MIMAT0005848 mmu-miR-466j 236733 Usp11 aaugugUGUACGUGUACGU-GUGu || | : |||||| ||| uucuuaACCUUUUCAUGCAUCACu 2 18 438 461 [mm9:X:20294521-20294544:+] 0.4840 121 0 -11.35 -0.3514 MIMAT0005858 mmu-miR-1197 236733 Usp11 ucUUCAUCUGGUAC-ACAGGAu | |||| : ||| |||||| guAUGUAGUUGAUGCUGUCCUg 2 20 476 497 [mm9:X:20297502-20297523:+] 0.5940 131 6 -18.09 -0.5285 MIMAT0007864 mmu-miR-1897-5p 236733 Usp11 ggggGAGAAA-GAGGUAGGUUUc || ||| | |||||||| guugCUGUUUGGUACAUCCAAAg 2 19 76 98 [mm9:X:20294159-20294181:+] 0.5487 157 7 -18.42 -0.1733 MIMAT0007864 mmu-miR-1897-5p 236733 Usp11 ggGGGAG-AAAGAGGUA-GGUUUc ||||| |||| :||| ||||| cuCCCUCUUUUCCUCAUGCCAAAg 2 21 252 275 [mm9:X:20297278-20297301:+] 0.6307 143 0 -30.12 -0.7807 MIMAT0007873 mmu-miR-1896 236733 Usp11 gaGGAGUGGGUGGUAGUCU-CUc || ||||||| ||||| || gaCCAAACCCACC-UCAGAUGAg 2 21 807 828 [mm9:X:20294890-20294911:+] 0.6168 134 0 -30.82 -0.5205 MIMAT0007873 mmu-miR-1896 236733 Usp11 gagGAGUGGGUGGU-AGUCUCUc || :||: : | ||||||| aggCUGGCCUUUAACUCAGAGAu 2 20 571 593 [mm9:X:20297597-20297619:+] 0.4962 150 7 -17.26 -0.2310 MIMAT0009390 mmu-miR-1927 236733 Usp11 agUCAGGGAUUGUAGGUCUCCAg :||||: :: || ||||||| uuGGUCCUGGGAAUACAGAGGUg 2 22 179 201 [mm9:X:20294262-20294284:+] 0.5487 165 7 -20.69 -0.5788 MIMAT0009397 mmu-miR-1933-3p 236733 Usp11 uaUCAGUGUGA-CUACCAGGACc ||| : || |||||||| ccAGUACUUCUCUUUGGUCCUGg 2 21 166 188 [mm9:X:20294249-20294271:+] 0.5487 147 7 -22.63 -0.4213 MIMAT0009399 mmu-miR-1935 236733 Usp11 ucUCUAGGCGGUCGGAGACGGa |||| :| :| |||||||| agAGAU-UG-UA-CCUCUGCCu 2 21 588 606 [mm9:X:20297614-20297632:+] 0.4962 150 7 -26.69 -0.3330 MIMAT0009408 mmu-miR-1943 236733 Usp11 agguccACGGGUCUAGGAGGGAa |||:| ||||||| uauuuaUGCUC--CCCCUCCCUc 2 18 238 258 [mm9:X:20297264-20297284:+] 0.6307 142 7 -19.26 -0.5846 MIMAT0009430 mmu-miR-1957 236733 Usp11 caGUAUACG-AGAUGGUGAc |||:||: |:||||||| uuCAUGUGUGUUUACCACUa 2 18 692 711 [mm9:X:20294775-20294794:+] 0.5131 164 7 -20.90 -1.1286 MIMAT0009431 mmu-miR-1958 236733 Usp11 ugaAUGACGAAGGUGAAAGGAu ||| | ||: ||||||| gucUACCCCCUCU-CUUUCCUg 2 20 53 73 [mm9:X:20297079-20297099:+] 0.4858 153 7 -14.21 -0.3107 MIMAT0009446 mmu-miR-1971 236733 Usp11 agAGUCGGGUCGGAAAUg |||| |::||||||| gaUCAGGCUGGCCUUUAa 2 17 567 584 [mm9:X:20297593-20297610:+] 0.4962 164 7 -21.30 -0.3034 MIMAT0009458 mmu-miR-1981 236733 Usp11 cgGUGCAGAUUCGGGUCGGAAAUg :::| | || |::||||||| ugUGUGGAUCAGGCUGGCCUUUAa 2 23 561 584 [mm9:X:20297587-20297610:+] 0.4962 158 7 -19.02 -0.3086 MIMAT0009460 mmu-miR-1982.1 236733 Usp11 gacaccCUCUUG-UAUCCC-ACUCu |||:|: ||:||| |||| ucagauGAGGAUGAUGGGGAUGAGa 2 18 820 844 [mm9:X:20294903-20294927:+] 0.6168 128 0 -22.68 -0.2731 MIMAT0011211 mmu-miR-2135 236733 Usp11 caAAGCCGGGGUUCUGGAGa ||: :::: ||||||| uuUUUUUUUUUUAGACCUCu 2 19 139 158 [mm9:X:20294222-20294241:+] 0.5487 146 7 -13.82 -0.9142 MIMAT0011215 mmu-miR-2139 236733 Usp11 cgucaAUGGUCCUC---GUCGCGU-CGa |:||||| | ::||||| || agaacUGCCAGGUGUGUUGGCGCAUGCc 2 20 490 517 [mm9:X:20294573-20294600:+] 0.4830 122 0 -22.39 -0.1435 MIMAT0011222 mmu-miR-2146 236733 Usp11 guguaccuuggGAAGAGGUg |||||||| uagaccucuggCUUCUCCAg 2 10 150 169 [mm9:X:20294233-20294252:+] 0.5487 145 7 -14.32 -0.2943 MIMAT0011222 mmu-miR-2146 236733 Usp11 guguaccuuggGAAGAGGUg |||||||| uuuaccacuaaCUUCUCCAc 2 10 702 721 [mm9:X:20294785-20294804:+] 0.5131 145 7 -17.49 -0.3653 MIMAT0015640 mmu-miR-3470a 236733 Usp11 ggucggaccagauGUUUCACu ||||||| cuuuuccucaugcCAAAGUGu 2 9 258 278 [mm9:X:20297284-20297304:+] 0.6307 140 7 -11.90 -0.5048 MIMAT0015641 mmu-miR-3470b 236733 Usp11 ggucGGA-CCAGAUGUCU-CACu ||| || |||||| ||| ugguCCUGGGAAUACAGAGGUGu 2 18 180 202 [mm9:X:20294263-20294285:+] 0.5487 124 0 -23.67 -0.4108 MIMAT0015641 mmu-miR-3470b 236733 Usp11 ggucGGACCAGAUGUCUCACu | || | |||||||| uuuaCAUGAAC-ACAGAGUGu 2 18 300 319 [mm9:X:20297326-20297345:+] 0.6551 147 7 -15.19 -1.0923 MIMAT0015645 mmu-miR-3473 236733 Usp11 ccGA-CUCGGUAGAGAGGu || || : |||||||| auCUGGAUUAAUCUCUCCu 2 17 327 345 [mm9:X:20294410-20294428:+] 0.5053 151 7 -19.90 -1.0345 MIMAT0015645 mmu-miR-3473 236733 Usp11 ccGACUCGGU-AGAGAGGu || |||| ||||||| ccCUUUGCCACUCUCUCCu 2 17 34 52 [mm9:X:20297060-20297078:+] 0.4777 155 7 -20.34 -0.1738 MIMAT0000128 mmu-miR-30a 236733 Usp11 gaaggucAGCUCCUACAAAUGu || | :||||||| gacucuuUCAUGUGUGUUUACc 2 16 686 707 [mm9:X:20294769-20294790:+] 0.5131 147 7 -13.27 -0.3296 MIMAT0000130 mmu-miR-30b 236733 Usp11 ucGACUCACA---U-CCUACAAAUGu |||| | | | | :||||||| gaCUGACUCUUUCAUGUGUGUUUACc 2 21 682 707 [mm9:X:20294765-20294790:+] 0.5131 146 7 -10.25 -0.3241 MIMAT0000140 mmu-miR-128 236733 Usp11 uuUCUCUGGCCAAGU-GACACu || ||: | ||| ||||| ccAGCUACUUGGUCAGCUGUGg 2 20 525 546 [mm9:X:20294608-20294629:+] 0.4979 123 0 -17.21 -0.1079 MIMAT0000140 mmu-miR-128 236733 Usp11 uuucucuggccaAGUGACACu |||||||| guguccuggaacUCACUGUGu 2 10 545 565 [mm9:X:20297571-20297591:+] 0.4962 145 7 -18.34 -0.1869 MIMAT0000160 mmu-miR-150 236733 Usp11 gugaccaUGUUCCCAACCCUCu | ||| |||||||| guuucagAAAAGUGUUGGGAGu 2 16 608 629 [mm9:X:20294691-20294712:+] 0.4973 159 7 -17.30 -0.1523 MIMAT0000214 mmu-miR-185 236733 Usp11 aguccUUGACGGAA--AGAGAGGu | ||| || ||||||| aaauuAUCUGGAUUAAUCUCUCCu 2 18 322 345 [mm9:X:20294405-20294428:+] 0.5053 148 7 -14.90 -1.0400 MIMAT0000214 mmu-miR-185 236733 Usp11 aguccuuGACGGAAAGAGAGGu :|||| ||||||| gcccccuUUGCCACUCUCUCCu 2 16 31 52 [mm9:X:20297057-20297078:+] 0.4777 155 7 -19.38 -0.1738 MIMAT0000224 mmu-miR-194 236733 Usp11 agguguaccucaacGACAAUGu ||||||| gagucuucucugcuCUGUUACa 2 9 775 796 [mm9:X:20294858-20294879:+] 0.5712 140 7 -14.61 -0.6851 MIMAT0000248 mmu-miR-30e 236733 Usp11 gaaggucAGUUCCUACAAAUGu ||| | :||||||| gacucuuUCAUGUGUGUUUACc 2 16 686 707 [mm9:X:20294769-20294790:+] 0.5131 155 7 -12.92 -0.3241 MIMAT0000514 mmu-miR-30c 236733 Usp11 cgacucucacauCCUACAAAUGu | :||||||| ugacucuuucauGUGUGUUUACc 2 12 685 707 [mm9:X:20294768-20294790:+] 0.5131 143 7 -7.82 -0.3241 MIMAT0000515 mmu-miR-30d 236733 Usp11 gaaggucAGCCCCUACAAAUGu || | :||||||| gacucuuUCAUGUGUGUUUACc 2 16 686 707 [mm9:X:20294769-20294790:+] 0.5131 147 7 -12.92 -0.3296 MIMAT0000555 mmu-miR-324-5p 236733 Usp11 uguGGUUACGGGAUCCCCU-ACGc || | | :| :||||| ||| uguCCUAGGGUCAGGGGGAGUGCa 2 21 8 31 [mm9:X:20294091-20294114:+] 0.4597 124 0 -23.06 -0.6096 MIMAT0000671 mmu-miR-224 236733 Usp11 uuGCCUUGGUGAUCACUGAAu | | || :| |||||||| gcCCGUACAGC-AGUGACUUc 2 20 206 225 [mm9:X:20297232-20297251:+] 0.6307 153 7 -13.71 -0.3062 MIMAT0000743 mmu-miR-379 236733 Usp11 ggaUGCAAGGUAUCAGAUGGu || ||: ||||||| gccACUCUCUCCUGUCUACCc 2 19 40 60 [mm9:X:20297066-20297086:+] 0.4748 146 7 -16.83 -0.2537 MIMAT0000746 mmu-miR-381 236733 Usp11 ugUCUCUCGAACGGGAACAUAu |||||| ||||||| acAGAGAG-----ACUUGUAUa 2 21 248 264 [mm9:X:20294331-20294347:+] 0.5487 142 7 -22.16 -1.1236 MIMAT0000747 mmu-miR-382 236733 Usp11 gcuuaggUGGUGCUUGUUGAAg ||:| :||||||| aagaaaaACUAGAGACAACUUc 2 16 205 226 [mm9:X:20294288-20294309:+] 0.5487 151 7 -16.61 -0.6790 MIMAT0000766 mmu-miR-335-5p 236733 Usp11 ugUAAAAAGCAAUAACGAGAACu || | || |:| ||||||| ggAUCUGUCUGUGUAGCUCUUGg 2 22 522 544 [mm9:X:20297548-20297570:+] 0.4962 161 7 -13.67 -0.2265 MIMAT0004745 mmu-miR-384-5p 236733 Usp11 uguaacggauccuuaACAAAUGu ||||||| ugacucuuucaugugUGUUUACc 2 9 685 707 [mm9:X:20294768-20294790:+] 0.5131 140 7 -7.30 -0.3296 MIMAT0003183 mmu-miR-376c 236733 Usp11 ugcacuuUAAAGGAG-AUACAa :||||:|| ||||| uggcuuuGUUUCUUCAUAUGUa 2 15 397 418 [mm9:X:20297423-20297444:+] 0.5618 126 0 -12.29 -1.0730 MIMAT0003729 mmu-miR-216b 236733 Usp11 agUGUAAACGGACGUCUCUAAa :| ||| || |||||||| ugGCCUUUAACU-CAGAGAUUg 2 21 575 595 [mm9:X:20297601-20297621:+] 0.4962 158 7 -14.49 -0.2301 MIMAT0003456 mmu-miR-495 236733 Usp11 uucuucACGUGGUACAAACAAa || | :: ||||||| cuguccUG-AGUGGGUUUGUUg 2 17 490 510 [mm9:X:20297516-20297536:+] 0.5451 142 7 -9.19 -0.2822 MIMAT0003482 mmu-miR-499 236733 Usp11 uuUGUA-GUGACGUUCAGAAUu || | | || | ||||||| ugACUUCCUCUCCUAGUCUUAu 2 20 219 240 [mm9:X:20297245-20297266:+] 0.6307 154 7 -10.34 -0.7812 MIMAT0003780 mmu-miR-490 236733 Usp11 gucguaccucaGGAGGUCCAAc ::|||||||| ugcuucaccacUUUCCAGGUUc 2 12 461 482 [mm9:X:20294544-20294565:+] 0.4680 147 7 -14.23 -0.5093 MIMAT0004847 mmu-miR-882 236733 Usp11 ugauuACGCGAUUGAGAGAGGa || :||| ||||||| uuaucUGGAUUAA-UCUCUCCu 2 18 325 345 [mm9:X:20294408-20294428:+] 0.5053 151 7 -16.64 -1.0185 MIMAT0004847 mmu-miR-882 236733 Usp11 ugauuACGCGAUUGAGAGAGGa | :|| ||||||||| cccccUUUGC-CACUCUCUCCu 2 18 32 52 [mm9:X:20297058-20297078:+] 0.4777 151 7 -20.28 -0.1738 MIMAT0004936 mmu-miR-873 236733 Usp11 uccucUGAGUGUUCA-AGGACg :||| :::|| ||||| guguaGCUCUUGGGUGUCCUGg 2 17 532 553 [mm9:X:20297558-20297579:+] 0.4962 120 0 -14.92 -0.2526 MIMAT0004937 mmu-miR-875-5p 236733 Usp11 guggacUAUUU-UGACUC-CAUAu ||:|| || ||| |||| guuuacAUGAACACAGAGUGUAUu 2 17 299 322 [mm9:X:20297325-20297348:+] 0.6551 123 0 -9.12 -0.8679 MIMAT0004943 mmu-miR-653 236733 Usp11 gucaucUCUAA---CA-AAGUUGUg ||||| | ||||||| agcuccAGAUUCCCAUGUUCAACAg 2 16 370 394 [mm9:X:20297396-20297420:+] 0.5585 141 7 -9.76 -0.4982 MIMAT0005850 mmu-miR-1192 236733 Usp11 uuaaACCAGA--CAAACAAACAAa || || || ||||||| augcUGUCCUGAGUGGGUUUGUUg 2 19 487 510 [mm9:X:20297513-20297536:+] 0.5451 145 7 -10.41 -0.2798

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055741 Usp11 Mus musculus 236733 19536157 0 0 R55517; MOUSE$USP11_01; Binding factors: mmu-miR-34a-5p , mmu-miR-34b-5p , mmu-miR-34c-5p , mmu-miR-449a-5p , mmu-miR-449b , mmu-miR-449c-5p // 0 0 R55525; MOUSE$USP11_02; Binding factors: mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-195a-5p , mmu-miR-503-5p // 0 0 R55532; MOUSE$USP11_03; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-98-5p

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp11 RAID00164811 mmu-miR-495-3p miRNA MIMAT0003456 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID00171484 mmu-miR-1192 miRNA MIMAT0005850 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID00279390 mmu-miR-882 miRNA MIMAT0004847 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID00281850 mmu-miR-201-3p miRNA MIMAT0017001 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID00285218 mmu-miR-30e-5p miRNA MIMAT0000248 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID00922524 mmu-miR-381-3p miRNA MIMAT0000746 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID00958647 mmu-miR-7050-5p miRNA MIMAT0028004 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01059091 mmu-miR-7021-3p miRNA MIMAT0027947 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01220892 mmu-miR-6986-5p miRNA MIMAT0027874 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01231605 mmu-miR-194-5p miRNA MIMAT0000224 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01330338 mmu-miR-490-3p miRNA MIMAT0003780 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01344670 mmu-miR-6401 miRNA MIMAT0025153 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01534289 mmu-miR-384-5p miRNA MIMAT0004745 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01595953 mmu-miR-376c-3p miRNA MIMAT0003183 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01704920 mmu-miR-224-5p miRNA MIMAT0000671 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID01926095 mmu-miR-499-5p miRNA MIMAT0003482 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02060707 mmu-miR-30c-5p miRNA MIMAT0000514 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02070697 mmu-miR-8113 miRNA MIMAT0031419 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02129826 mmu-miR-222-5p miRNA MIMAT0017061 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02198106 mmu-miR-3470b miRNA MIMAT0015641 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02335998 mmu-miR-216b-5p miRNA MIMAT0003729 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02351955 mmu-miR-7646-5p miRNA MIMAT0029794 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02372072 mmu-miR-30b-5p miRNA MIMAT0000130 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02537149 mmu-miR-6954-5p miRNA MIMAT0027808 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02632476 mmu-miR-379-5p miRNA MIMAT0000743 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02706235 mmu-miR-30a-5p miRNA MIMAT0000128 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02738896 mmu-miR-328-5p miRNA MIMAT0017030 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02769596 mmu-miR-451b miRNA MIMAT0025178 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02834908 mmu-miR-128-3p miRNA MIMAT0000140 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02974861 mmu-miR-653-5p miRNA MIMAT0004943 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID02990658 mmu-miR-672-3p miRNA MIMAT0017241 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03191598 mmu-miR-150-5p miRNA MIMAT0000160 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03250433 mmu-miR-873a-5p miRNA MIMAT0004936 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03402365 mmu-miR-875-5p miRNA MIMAT0004937 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03403035 mmu-miR-124-5p miRNA MIMAT0004527 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03508144 mmu-miR-324-5p miRNA MIMAT0000555 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03549315 mmu-miR-185-5p miRNA MIMAT0000214 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03787066 mmu-miR-335-5p miRNA MIMAT0000766 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03794609 mmu-miR-7229-3p miRNA MIMAT0028427 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03795876 mmu-miR-7031-5p miRNA MIMAT0027966 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03802777 mmu-miR-382-5p miRNA MIMAT0000747 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03961729 mmu-miR-466l-3p miRNA MIMAT0005830 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID03992143 mmu-miR-30d-5p miRNA MIMAT0000515 Usp11 mRNA 236733 Prediction 0.1828 Usp11 RAID04030019 mmu-miR-6953-5p miRNA MIMAT0027806 Usp11 mRNA 236733 Prediction 0.1828