DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT012875 mmu-miR-34b-5p Mus musculus Usp4 22258 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 22258 Usp4 auuugGUGG-UAUACUUUGGUCg :|:| || | ||||||| gcucaUAUCAAUCUCAAACCAGa 2 18 79 101 [mm9:9:108294247-108294269:+] 0.6298 152 7 -13.08 -1.0118 MIMAT0004523 mmu-miR-29b* 22258 Usp4 auuUGGUGGUAUACUU-UGGUCg :||||| | || ||||| ccuGCCACCCUCCCAACACCAGc 2 20 16 38 [mm9:9:108294184-108294206:+] 0.4129 123 0 -18.84 -0.1303 MIMAT0004523 mmu-miR-29b* 22258 Usp4 auuugGUGG-UAUACUUUGGUCg :|:| || | ||||||| gcucaUAUCAAUCUCAAACCAGa 2 18 278 300 [mm9:9:108294247-108294269:+] 0.6298 152 7 -13.08 -0.9721 MIMAT0004523 mmu-miR-29b* 22258 Usp4 auuUGGUGGUAUACUU-UGGUCg :||||| | || ||||| ccuGCCACCCUCCCAACACCAGc 2 20 215 237 [mm9:9:108294184-108294206:+] 0.4129 123 0 -18.84 -0.1133 MIMAT0004527 mmu-miR-124* 22258 Usp4 uaGUUCCAG-GCGACACU-UGUGc |||| || | | ||| |||| cuCAAGUUCUCACACUGAGACACa 2 21 1180 1203 [mm9:9:108260061-108260084:+] 0.5007 123 0 -12.65 -0.3211 MIMAT0004535 mmu-miR-150* 22258 Usp4 gauaggggguccggACAUGGUc ||||||| acugagauuaaagaUGUACCAg 2 9 246 267 [mm9:9:108259127-108259148:+] 0.5006 140 7 -18.09 -0.4429 MIMAT0004544 mmu-miR-193* 22258 Usp4 aguagaacgggcgUUUCUGGGu :||||||| aaagaguggagagGAAGACCCu 2 10 281 302 [mm9:9:108294449-108294470:+] 0.5042 141 7 -12.33 -0.1290 MIMAT0004544 mmu-miR-193* 22258 Usp4 aguagaacgggcgUUUCUGGGu :||||||| aaagaguggagagGAAGACCCu 2 10 480 501 [mm9:9:108294449-108294470:+] 0.5042 141 7 -12.33 -0.1137 MIMAT0000234 mmu-miR-201 22258 Usp4 uuCUUGU-UACGGAAUGACUCAu |||:| ||| || ||||||| uaGAAUACAUGACUCACUGAGUg 2 21 585 607 [mm9:9:108259466-108259488:+] 0.5004 171 7 -21.46 -0.1167 MIMAT0000234 mmu-miR-201 22258 Usp4 uucUUGUUACGGAAUGACUCAu :|:::||:: |||||||| ugaGAUGGUGUUGUACUGAGUu 2 20 649 670 [mm9:9:108259530-108259551:+] 0.5004 163 7 -18.17 -0.4863 MIMAT0004546 mmu-miR-202-5p 22258 Usp4 uuucuucAUAUACGUAUCCUu ||||||||||||| agguguuUAUAUGCAUAGGAg 2 15 1154 1174 [mm9:9:108260035-108260055:+] 0.5007 170 7 -21.41 -0.2676 MIMAT0004574 mmu-miR-294* 22258 Usp4 ucuaucccGGAGGUAAA-ACUCa ||||| ||| |||| ggacauuaCCUCCUUUUAUGAGa 2 15 105 127 [mm9:9:108294273-108294295:+] 0.6513 126 0 -15.12 -0.8721 MIMAT0004574 mmu-miR-294* 22258 Usp4 ucuaucccGGAGGUAAA-ACUCa ||||| ||| |||| ggacauuaCCUCCUUUUAUGAGa 2 15 304 326 [mm9:9:108294273-108294295:+] 0.6513 126 0 -15.12 -0.8252 MIMAT0004574 mmu-miR-294* 22258 Usp4 ucuAUCCCGGA---GGUAAAACUCa ||| |:| |||||||||| gccUAGAACUUUGACCAUUUUGAGc 2 20 709 733 [mm9:9:108259590-108259614:+] 0.5002 158 7 -16.83 -0.2470 MIMAT0000377 mmu-miR-299* 22258 Usp4 uaCAU-ACACC-CUGCCAUUUGGu ||| | ||| || ||||||| caGUAGUCUGGCCACAGUAAACCa 2 21 389 412 [mm9:9:108294557-108294580:+] 0.5851 158 7 -16.82 -0.8239 MIMAT0000377 mmu-miR-299* 22258 Usp4 uaCAU-ACACC-CUGCCAUUUGGu ||| | ||| || ||||||| caGUAGUCUGGCCACAGUAAACCa 2 21 588 611 [mm9:9:108294557-108294580:+] 0.5851 158 7 -16.82 -0.7807 MIMAT0004583 mmu-miR-130b* 22258 Usp4 ucaUCACGUUGUCCCUUUCUCa || |: | |||||||| augAGAAGAGGAAGGAAAGAGa 2 20 122 143 [mm9:9:108294290-108294311:+] 0.6434 151 7 -13.50 -0.7018 MIMAT0004583 mmu-miR-130b* 22258 Usp4 ucaUCACGUUGUCCCUUUCUCa || |: | |||||||| augAGAAGAGGAAGGAAAGAGa 2 20 321 342 [mm9:9:108294290-108294311:+] 0.6434 151 7 -13.50 -0.6519 MIMAT0004617 mmu-miR-148a* 22258 Usp4 ucagccUCA-CAGAGUCUUGAAa ||| | | :||||||| agcucaAGUAGGCCUAGAACUUu 2 17 698 720 [mm9:9:108259579-108259601:+] 0.5004 151 7 -12.49 -0.2752 MIMAT0004617 mmu-miR-148a* 22258 Usp4 ucagccucacagagUCUUGAAa ||||||| uuuauaugcauaggAGAACUUc 2 9 1159 1180 [mm9:9:108260040-108260061:+] 0.5007 140 7 -6.85 -0.2024 MIMAT0004628 mmu-miR-21* 22258 Usp4 cugucGGGUAGCUGACGACAAc |: :|: :||||||| guccuCUAGUUCUUUGCUGUUc 2 18 435 456 [mm9:9:108294603-108294624:+] 0.5834 145 7 -14.42 -0.9047 MIMAT0004628 mmu-miR-21* 22258 Usp4 cugucGGGUAGCUGACGACAAc |: :|: :||||||| guccuCUAGUUCUUUGCUGUUc 2 18 634 655 [mm9:9:108294603-108294624:+] 0.5834 145 7 -14.42 -0.8640 MIMAT0000544 mmu-miR-129-3p 22258 Usp4 uaCGAAAAACCCCAUUCCCGAa ||||| || | ||||||| cuGCUUUCUGAG--AAGGGCUc 2 21 148 167 [mm9:9:108294316-108294335:+] 0.6354 161 7 -18.05 -0.4392 MIMAT0000544 mmu-miR-129-3p 22258 Usp4 uaCGAAAAACCCCAUUCCCGAa ||||| || | ||||||| cuGCUUUCUGAG--AAGGGCUc 2 21 347 366 [mm9:9:108294316-108294335:+] 0.6354 161 7 -18.05 -0.3969 MIMAT0000551 mmu-miR-323-3p 22258 Usp4 ucUCCA-GCUGGCACAUUACAc |||| |||: |||||||| gcAGGUGAGACUUUGUAAUGUu 2 20 104 125 [mm9:9:108258985-108259006:+] 0.4809 166 7 -18.79 -0.9794 MIMAT0000558 mmu-miR-325* 22258 Usp4 uguGAAUGACUCGUGGAUGAUCc |||:: || ||||||| ugcCUUGUCUCUCAGCUACUAGc 2 21 1243 1265 [mm9:9:108260124-108260146:+] 0.5007 152 7 -15.37 -0.1911 MIMAT0000569 mmu-miR-330* 22258 Usp4 agagacGUCCGGGACAC-GAAACg || ||::|||| ||||| gacacaCA-GCUUUGUGCCUUUGg 2 18 1198 1220 [mm9:9:108260079-108260101:+] 0.5007 127 0 -18.56 -0.2945 MIMAT0000605 mmu-miR-350 22258 Usp4 cuuucacAUAC--CCGAAACACUu |||| | ||||||| ucugggaUAUGAAGUAUUUGUGAg 2 16 390 413 [mm9:9:108259271-108259294:+] 0.5071 146 7 -13.21 -0.4745 MIMAT0005444 mmu-miR-218-2* 22258 Usp4 gcgccACGAACUGUCUUG-GUAc || | |||||||| ||| gccuuUGGUGGACAGAACACAUg 2 18 1213 1235 [mm9:9:108260094-108260116:+] 0.5007 133 0 -24.97 -0.1199 MIMAT0003388 mmu-miR-376b* 22258 Usp4 auUGGUAUCUUCCUUAUAGGUg | || | || ||||||| cuAGCACUG-AGCUAUAUCCAg 2 21 610 630 [mm9:9:108259491-108259511:+] 0.5004 146 7 -11.64 -0.2057 MIMAT0001093 mmu-miR-411* 22258 Usp4 ccaaucaccUGGCACAAUGUAu | || ||||||| gaggaugaaAACG-GUUACAUg 2 14 71 91 [mm9:9:108258952-108258972:+] 0.4782 143 7 -14.78 -0.1532 MIMAT0001094 mmu-miR-412 22258 Usp4 gccgaUCACCUGGUCCACUu | || | ||||||| uugaaAAUGAAGCAGGUGAg 2 16 93 112 [mm9:9:108258974-108258993:+] 0.4809 151 7 -14.64 -0.4367 MIMAT0004758 mmu-miR-463 22258 Usp4 gauGGAAUAUACCACAGAUAGu ||||| | | ||||||: cucCCUUAAAAGAAGUCUAUUc 2 20 662 683 [mm9:9:108294830-108294851:+] 0.5501 147 0 -12.15 -0.2013 MIMAT0004758 mmu-miR-463 22258 Usp4 gauGGAAUAUACCACAGAUAGu ||||| | | ||||||: cucCCUUAAAAGAAGUCUAUUc 2 20 861 882 [mm9:9:108294830-108294851:+] 0.5501 147 0 -12.15 -0.1799 MIMAT0004758 mmu-miR-463 22258 Usp4 gaugGAAUAUACCAC-AGAUAGu | || :|| || |||||| gccgCCUACGUGUUGUUCUAUCa 2 19 47 69 [mm9:9:108294016-108294038:+] 0.6265 126 6 -15.91 -0.2801 MIMAT0002110 mmu-miR-469 22258 Usp4 ccuguggUUCUAGUUAC-UUUCUCCGu ::| || ||| ||||||| cugagaaGGGCUCUAUGUUAAGAGGCu 2 20 155 181 [mm9:9:108294323-108294349:+] 0.6354 154 7 -17.30 -0.9805 MIMAT0002110 mmu-miR-469 22258 Usp4 ccuguggUUCUAGUUAC-UUUCUCCGu ::| || ||| ||||||| cugagaaGGGCUCUAUGUUAAGAGGCu 2 20 354 380 [mm9:9:108294323-108294349:+] 0.6354 154 7 -17.30 -0.9387 MIMAT0003166 mmu-miR-546 22258 Usp4 cuGAGGCACGGUGGUa :| :| ||||||| ggUUGUGAGCCACCAu 2 15 992 1007 [mm9:9:108259873-108259888:+] 0.5000 146 7 -19.24 -0.2462 MIMAT0003166 mmu-miR-546 22258 Usp4 cugAGGCACGGUGGUa | :| ||||||| uagUGUGAGCCACCAu 2 14 767 782 [mm9:9:108259648-108259663:+] 0.5000 145 7 -16.13 -0.3202 MIMAT0005295 mmu-miR-376c* 22258 Usp4 auUUGUAUCUUCCUUAUAGGUg |:|| | || ||||||| cuAGCACUG-AGCUAUAUCCAg 2 21 610 630 [mm9:9:108259491-108259511:+] 0.5004 150 7 -13.06 -0.2057 MIMAT0005460 mmu-miR-1224 22258 Usp4 gaGGUGGAGGGGUCAG-GAGUg :|| || ||: ||| |||| gaUCA-CUGCCUUGUCUCUCAg 2 20 1237 1257 [mm9:9:108260118-108260138:+] 0.5007 121 0 -20.51 -0.2555 MIMAT0003733 mmu-miR-665 22258 Usp4 ucccugGAGUCGGAGGACCa :| || ||||||| uuuucaUUGAGGCUCCUGGa 2 15 735 754 [mm9:9:108259616-108259635:+] 0.5000 150 7 -19.04 -0.3196 MIMAT0003892 mmu-miR-762 22258 Usp4 cgaGACAGGGCCGGGGUCGGGg ||| |: :||||||| gcaCUGAGCUAUAUCCAGCCCu 2 20 613 634 [mm9:9:108259494-108259515:+] 0.5004 147 7 -23.57 -0.7033 MIMAT0003892 mmu-miR-762 22258 Usp4 cgagacagggccGGGGUCGGGg |:||||||| acugagccaucuCUCCAGCCCu 2 11 1062 1083 [mm9:9:108259943-108259964:+] 0.5000 146 7 -27.32 -0.6740 MIMAT0015219 mmu-miR-3475 22258 Usp4 aaGUUUGGUACACGGAGGUCu :|||||| |||||||| agUAAACCA--AGCCUCCAGc 2 20 404 422 [mm9:9:108294572-108294590:+] 0.5851 160 7 -24.13 -0.5296 MIMAT0015219 mmu-miR-3475 22258 Usp4 aaGUUUGGUACACGGAGGUCu :|||||| |||||||| agUAAACCA--AGCCUCCAGc 2 20 603 621 [mm9:9:108294572-108294590:+] 0.5851 160 7 -24.13 -0.4879 MIMAT0003735 mmu-miR-672 22258 Usp4 aguguGUGUCAUGUGGUU-GGAGu ||||||| ||||| |||| cuggcCACAGUAAACCAAGCCUCc 2 19 396 419 [mm9:9:108294564-108294587:+] 0.5851 146 0 -24.55 -0.5373 MIMAT0003735 mmu-miR-672 22258 Usp4 aguguGUGUCAUGUGGUU-GGAGu ||||||| ||||| |||| cuggcCACAGUAAACCAAGCCUCc 2 19 595 618 [mm9:9:108294564-108294587:+] 0.5851 146 0 -24.55 -0.4954 MIMAT0003895 mmu-miR-764-3p 22258 Usp4 ugUCAACGGUGAU--ACCGGAGGa :| ||:: ||| |||||||| caGGAUGUUCCUAAGUGGCCUCCa 2 21 419 442 [mm9:9:108259300-108259323:+] 0.5120 159 7 -22.16 -0.6510 MIMAT0003895 mmu-miR-764-3p 22258 Usp4 uguCAACGGUGAUACCG-GAGGa ||||:| :| ||| |||| guuGUUGUC-UUCAGGCACUCCa 2 20 942 963 [mm9:9:108259823-108259844:+] 0.5000 121 0 -17.67 -0.2563 MIMAT0014815 mmu-miR-3099* 22258 Usp4 guuccCGACCUUC---CUUCGACc | ||||:| ||||||| guucuGAUGGAGGGGUGAAGCUGa 2 17 120 143 [mm9:9:108294089-108294112:+] 0.6265 151 7 -18.87 -0.3732 MIMAT0003451 mmu-miR-677 22258 Usp4 agUCUUCGAU-UAGU-AGUGACUu |||| || || | ||||||| auAGAA--UACAUGACUCACUGAg 2 21 584 605 [mm9:9:108259465-108259486:+] 0.5004 151 7 -15.37 -0.1346 MIMAT0003471 mmu-miR-692 22258 Usp4 cucacuccgcgagUUUCUCUa ||||||| gagaagaggaaggAAAGAGAa 2 9 124 144 [mm9:9:108294292-108294312:+] 0.6434 140 7 -15.55 -0.4874 MIMAT0003471 mmu-miR-692 22258 Usp4 cucacuccgcgagUUUCUCUa ||||||| gagaagaggaaggAAAGAGAa 2 9 323 343 [mm9:9:108294292-108294312:+] 0.6434 140 7 -15.55 -0.4427 MIMAT0004826 mmu-miR-146b* 22258 Usp4 ugGUCUUGA--CUCA--GGGAUCCCg |||:||| |||| ||||||| ccCAGGACUGGGAGUGAACCUAGGGc 2 21 555 580 [mm9:9:108259436-108259461:+] 0.5009 162 7 -36.42 -0.1239 MIMAT0003487 mmu-miR-697 22258 Usp4 agagguguccuGGUCCUACAa :|||||||| uugugaguaacUCAGGAUGUu 2 11 407 427 [mm9:9:108259288-108259308:+] 0.5095 146 7 -15.23 -0.2165 MIMAT0003496 mmu-miR-706 22258 Usp4 aaaaaacucuguccCAAAGAGa ||||||| ggcuauuguuuucaGUUUCUCa 2 9 567 588 [mm9:9:108294735-108294756:+] 0.5624 140 7 -9.07 -1.0856 MIMAT0003496 mmu-miR-706 22258 Usp4 aaaaaacucuguccCAAAGAGa ||||||| ggcuauuguuuucaGUUUCUCa 2 9 766 787 [mm9:9:108294735-108294756:+] 0.5624 140 7 -9.07 -1.0552 MIMAT0003497 mmu-miR-707 22258 Usp4 gcauccguucgccGUACUGAc ||||||| gccgaauagaauaCAUGACUc 2 9 579 599 [mm9:9:108259460-108259480:+] 0.5007 140 7 -10.00 -0.4629 MIMAT0003498 mmu-miR-708* 22258 Usp4 gauCUUCGAGUGUCAGAUCAAc || | |::: ||||||| uuuGAUG-UUGUCCUCUAGUUc 2 20 426 446 [mm9:9:108294594-108294614:+] 0.5834 145 7 -7.61 -0.4454 MIMAT0003498 mmu-miR-708* 22258 Usp4 gauCUUCGAGUGUCAGAUCAAc || | |::: ||||||| uuuGAUG-UUGUCCUCUAGUUc 2 20 625 645 [mm9:9:108294594-108294614:+] 0.5834 145 7 -7.61 -0.4072 MIMAT0003499 mmu-miR-709 22258 Usp4 aggAGGACGGAGACGGAGg || | |: ||||||| uggUCAU-CUCCUGCCUCu 2 17 331 348 [mm9:9:108259212-108259229:+] 0.5006 146 7 -24.88 -0.1431 MIMAT0003502 mmu-miR-712 22258 Usp4 ccauggcgggcccaCUUCCUc |||||| uuuuaugagaagagGAAGGAa 2 8 118 138 [mm9:9:108294286-108294306:+] 0.6434 120 6 -9.40 -0.1006 MIMAT0003504 mmu-miR-713 22258 Usp4 cgacacacggaAGUCACGu ||||||| ucuggaagaagUCAGUGCu 2 9 1036 1054 [mm9:9:108259917-108259935:+] 0.5000 140 7 -15.79 -0.1124 MIMAT0003510 mmu-miR-717 22258 Usp4 ucUCUUCCAUAGAGACA-GACUc ||| |||:| ||| |||| ugAGAUGGUGU---UGUACUGAg 2 21 649 668 [mm9:9:108259530-108259549:+] 0.5004 120 0 -20.86 -0.7011 MIMAT0004210 mmu-miR-804 22258 Usp4 agguccacuccuugUUGAGUGu ||||||| ccaggccaaauuugAACUCACu 2 9 673 694 [mm9:9:108259554-108259575:+] 0.5004 140 7 -16.73 -0.3963 MIMAT0004838 mmu-miR-742* 22258 Usp4 acuAAUCGUUGGUACACUCAu | :|:: :|||||||| ugcUAGGUGUGUAUGUGAGUu 2 19 15 35 [mm9:9:108258896-108258916:+] 0.4945 150 7 -13.11 -0.3984 MIMAT0004838 mmu-miR-742* 22258 Usp4 acuaAUCGUUGGU--ACACUCAu || || :| ||||||| gggaUAUGAAGUAUUUGUGAGUa 2 18 393 415 [mm9:9:108259274-108259296:+] 0.5071 144 7 -14.80 -1.0519 MIMAT0004842 mmu-miR-879 22258 Usp4 ccgaaucucgauaUUCGGAGa ||||||| gccacaguaaaccAAGCCUCc 2 9 399 419 [mm9:9:108294567-108294587:+] 0.5851 140 7 -11.17 -0.3779 MIMAT0004842 mmu-miR-879 22258 Usp4 ccgaaucucgauaUUCGGAGa ||||||| gccacaguaaaccAAGCCUCc 2 9 598 618 [mm9:9:108294567-108294587:+] 0.5851 140 7 -11.17 -0.3433 MIMAT0004844 mmu-miR-880 22258 Usp4 agAUGAGUCUCUCCUAC-CUCAu |:|| :| | | ||| |||| ccUGCUAGGUGUGUAUGUGAGUu 2 21 13 35 [mm9:9:108258894-108258916:+] 0.4945 124 0 -14.96 -0.2519 MIMAT0004845 mmu-miR-881* 22258 Usp4 ucuacACUGACA--AU--AGAGAGAc ||||| | || ||||||| cugaaUGACUAUUCUACUUCUCUCUg 2 18 368 393 [mm9:9:108259249-108259274:+] 0.5039 151 7 -18.17 -0.3910 MIMAT0004848 mmu-miR-883a-5p 22258 Usp4 cauUGACGAUGAAGAGAGUCGu ||||| : ||||||||| aucACUGCCUUGUCUCUCAGCu 2 20 1238 1259 [mm9:9:108260119-108260140:+] 0.5007 167 7 -23.52 -0.2627 MIMAT0004848 mmu-miR-883a-5p 22258 Usp4 cauUGACGAUGAAGAGA-GUCGu |||| | ||||| |||| accACUGAGCCAUCUCUCCAGCc 2 20 1059 1081 [mm9:9:108259940-108259962:+] 0.5000 127 0 -16.72 -0.3015 MIMAT0004882 mmu-miR-466f-3p 22258 Usp4 cacacauacacaCACACAUAc |||||||| uagaccugcuagGUGUGUAUg 2 10 9 29 [mm9:9:108258890-108258910:+] 0.4945 145 7 -15.01 -0.2161 MIMAT0004897 mmu-miR-654-5p 22258 Usp4 uguguacaagacGU-CGAAUGGu || ||||||| agugugagccacCAUGCUUACCu 2 11 768 790 [mm9:9:108259649-108259671:+] 0.5000 141 7 -13.59 -0.7464 MIMAT0004938 mmu-miR-875-3p 22258 Usp4 guAUCGGAGUCAUAAAAGUCc |:| || | |:||||||| auUGGGCU-AUUGUUUUCAGu 2 20 563 582 [mm9:9:108294731-108294750:+] 0.5623 157 7 -12.29 -0.4634 MIMAT0004938 mmu-miR-875-3p 22258 Usp4 guaucGGAGUCAUAAAA-GUCc :||||| ||||| ||| uguucUCUCAGAAUUUUCCAGc 2 17 512 533 [mm9:9:108294680-108294701:+] 0.5623 132 0 -14.96 -0.3848 MIMAT0004938 mmu-miR-875-3p 22258 Usp4 guAUCGGAGUCAUAAAAGUCc |:| || | |:||||||| auUGGGCU-AUUGUUUUCAGu 2 20 762 781 [mm9:9:108294731-108294750:+] 0.5623 157 7 -12.29 -0.4244 MIMAT0004938 mmu-miR-875-3p 22258 Usp4 guaucGGAGUCAUAAAA-GUCc :||||| ||||| ||| uguucUCUCAGAAUUUUCCAGc 2 17 711 732 [mm9:9:108294680-108294701:+] 0.5623 132 0 -14.96 -0.3498 MIMAT0004861 mmu-miR-877 22258 Usp4 gggACGCGGUAG-AGGAGAUg | :| ::|: ||||||| aaaUUUGAUGUUGUCCUCUAg 2 18 423 443 [mm9:9:108294591-108294611:+] 0.5834 144 7 -13.77 -0.6162 MIMAT0004861 mmu-miR-877 22258 Usp4 gggACGCGGUAG-AGGAGAUg | :| ::|: ||||||| aaaUUUGAUGUUGUCCUCUAg 2 18 622 642 [mm9:9:108294591-108294611:+] 0.5834 144 7 -13.77 -0.5724 MIMAT0004862 mmu-miR-877* 22258 Usp4 acccuccucccUCUUCUCCUGu ||| |||||| aaucucaaaccAGAUGAGGACa 2 12 88 109 [mm9:9:108294256-108294277:+] 0.6513 123 6 -14.33 -0.1484 MIMAT0004862 mmu-miR-877* 22258 Usp4 acccuccucccUCUUCUCCUGu ||| |||||| aaucucaaaccAGAUGAGGACa 2 12 287 308 [mm9:9:108294256-108294277:+] 0.6513 123 6 -14.33 -0.1302 MIMAT0004862 mmu-miR-877* 22258 Usp4 acccuccucccucuuCUCCUGu |||||| gugucccuggccucuGAGGACc 2 8 11 32 [mm9:9:108293370-108293391:+] 0.7491 120 6 -10.59 -0.1247 MIMAT0005830 mmu-miR-466l 22258 Usp4 uuAUACACACGUACAUAAAUAu | | | | || ||||||| uuUCUUUUUAGAUUUAUUUAUu 2 21 906 927 [mm9:9:108259787-108259808:+] 0.5000 152 7 -2.77 -1.1115 MIMAT0005831 mmu-miR-669k 22258 Usp4 aaCGUACGCACAUAUACGUAu |:| |:|| ||||||||| acGUAGGUGUUUAUAUGCAUa 2 20 1150 1170 [mm9:9:108260031-108260051:+] 0.5007 171 7 -18.46 -0.7815 MIMAT0005834 mmu-miR-466i 22258 Usp4 aucacacauacacaCACACAua |||||| ------ugauagcaGUGUGUcc 3 9 1 16 [mm9:9:108293360-108293375:+] 0.7491 120 0 -7.69 -0.1904 MIMAT0005834 mmu-miR-466i 22258 Usp4 aucacacauacacaCACACAUa ||||||| guuagaccugcuagGUGUGUAu 2 9 7 28 [mm9:9:108258888-108258909:+] 0.4945 140 7 -12.17 -0.2288 MIMAT0005836 mmu-miR-1186 22258 Usp4 guACGGAAAUUAAGGUCG-UGAg |||||| | :|||| ||| acUGCCUUGUCUCUCAGCUACUa 2 21 1241 1263 [mm9:9:108260122-108260144:+] 0.5007 128 0 -18.84 -0.2408 MIMAT0005836 mmu-miR-1186 22258 Usp4 guACGGAAAUUAAGGU-CGUGAg ||:: ||: |:|| ||||| acUGUUGUUGUCUUCAGGCACUc 2 21 939 961 [mm9:9:108259820-108259842:+] 0.5000 124 0 -17.28 -0.1636 MIMAT0005837 mmu-miR-1187 22258 Usp4 aaugUGUGUAUGUGUGU-GUGUAu ||: ||:| | || ||||| gaugACGAAUGCUC-CAGCACAUc 2 20 77 99 [mm9:9:108294046-108294068:+] 0.6265 121 0 -12.60 -0.2295 MIMAT0005838 mmu-miR-669j 22258 Usp4 acaaaCGUACACUCAUAUACGu |:| ||| ||||||| aaaacGUAGGUGUUUAUAUGCa 2 18 1147 1168 [mm9:9:108260028-108260049:+] 0.5007 157 7 -14.65 -0.9476 MIMAT0005840 mmu-miR-669i 22258 Usp4 caUACGUACACACAUAUACGu | |:| |||| ||||||| aaACGUAGGUGUUUAUAUGCa 2 20 1148 1168 [mm9:9:108260029-108260049:+] 0.5007 167 7 -16.21 -0.9476 MIMAT0005842 mmu-miR-669h-3p 22258 Usp4 acaCGUACACACAUAUACGUAu |:| |||| ||||||||| aacGUAGGUGUUUAUAUGCAUa 2 20 1149 1170 [mm9:9:108260030-108260051:+] 0.5007 175 7 -18.93 -0.7742 MIMAT0005857 mmu-miR-1196 22258 Usp4 uccgucuccguccAUCUAAa |||||| cuuucuuucuuuuUAGAUUu 2 8 901 920 [mm9:9:108259782-108259801:+] 0.5000 120 6 -4.15 -0.1629 MIMAT0005858 mmu-miR-1197 22258 Usp4 ucuucaucUGGUACACAGGAu ||:: ||||||| caugacucACUGAGUGUCCUa 2 14 592 612 [mm9:9:108259473-108259493:+] 0.5004 149 7 -15.71 -0.4952 MIMAT0007870 mmu-miR-1900 22258 Usp4 acuuccuGGUC-UCUCCCGCCGg |||| |||||||||| aggcacuCCAGAAGAGGGCGGCa 2 16 954 976 [mm9:9:108259835-108259857:+] 0.5000 166 7 -33.93 -0.4319 MIMAT0007873 mmu-miR-1896 22258 Usp4 gaGGAGUGGGUGGUAGUCUCUc || |:|| ||||||| aaCCAGCCUCAAACUCAGAGAu 2 21 216 237 [mm9:9:108259097-108259118:+] 0.5006 148 7 -18.59 -0.2062 MIMAT0007877 mmu-miR-1894-5p 22258 Usp4 ucuccGUCCACCAUCCCCU-CUc |||| |:||||| || cacacCAGGGCAUGGGGGAUGAg 2 18 150 172 [mm9:9:108294119-108294141:+] 0.6138 121 0 -24.36 -0.2643 MIMAT0007878 mmu-miR-1894-3p 22258 Usp4 gagggaAGUGGGAGA-GGGAACg || ||| || |||||| guuuugUCCCCCACUGCCCUUGa 2 17 607 629 [mm9:9:108294775-108294797:+] 0.5613 128 6 -21.17 -1.1001 MIMAT0007878 mmu-miR-1894-3p 22258 Usp4 gagggaAGUGGGAGA-GGGAACg || ||| || |||||| guuuugUCCCCCACUGCCCUUGa 2 17 806 828 [mm9:9:108294775-108294797:+] 0.5613 128 6 -21.17 -1.0709 MIMAT0009391 mmu-miR-1928 22258 Usp4 cucGACCGUUACAUCGa || | ||||||| gaaCUUUCUAUGUAGCc 2 15 197 213 [mm9:9:108259078-108259094:+] 0.5007 146 7 -10.26 -0.4309 MIMAT0009392 mmu-miR-1929 22258 Usp4 gaGACGAGAUAUUUCAGGAUCUu :| ||| | |:| ||||||| agUUUCUC-ACAGACUCCUAGAa 2 22 580 601 [mm9:9:108294748-108294769:+] 0.5624 159 7 -15.06 -0.7793 MIMAT0009392 mmu-miR-1929 22258 Usp4 gaGACGAGAUAUUUCAGGAUCUu :| ||| | |:| ||||||| agUUUCUC-ACAGACUCCUAGAa 2 22 779 800 [mm9:9:108294748-108294769:+] 0.5624 159 7 -15.06 -0.7353 MIMAT0009394 mmu-miR-1931 22258 Usp4 cggUAGCGUGGUCGGGAACGUa | :|||::: ||||||| ucgAAUGCAUUGCACCUUGCAc 2 20 521 542 [mm9:9:108259402-108259423:+] 0.5016 155 7 -21.05 -0.1368 MIMAT0009398 mmu-miR-1934 22258 Usp4 ucuccugcuucGUCCCCUGGUCu | | ||||||| gucccuggccuCUGAGGACCAGa 2 13 13 35 [mm9:9:108293372-108293394:+] 0.7491 144 7 -16.57 -1.2463 MIMAT0009405 mmu-miR-1941-5p 22258 Usp4 uucggagacaUGGUCGUA-GAGGGa |||||||| ||||| cccucccaacACCAGCAUCCUCCCc 2 15 23 47 [mm9:9:108294191-108294215:+] 0.4129 134 0 -29.09 -0.1117 MIMAT0009405 mmu-miR-1941-5p 22258 Usp4 uucggagacauggucguAGAGGGa |||||| guggaacuuucauuagcUCUCCCu 2 8 644 667 [mm9:9:108294812-108294835:+] 0.5601 120 6 -22.30 -0.1494 MIMAT0009405 mmu-miR-1941-5p 22258 Usp4 uucggagacaUGGUCGUA-GAGGGa |||||||| ||||| cccucccaacACCAGCAUCCUCCCc 2 15 222 246 [mm9:9:108294191-108294215:+] 0.4129 134 0 -29.09 -0.1129 MIMAT0009405 mmu-miR-1941-5p 22258 Usp4 uucggagacauggucguAGAGGGa |||||| guggaacuuucauuagcUCUCCCu 2 8 843 866 [mm9:9:108294812-108294835:+] 0.5601 120 6 -22.30 -0.1329 MIMAT0009421 mmu-miR-669o 22258 Usp4 uguAU-UUGUACGUGUGU-GUUGAu || |||||| ||| ||||| gcuUACAACAUG--GACACCAACUg 2 21 176 198 [mm9:9:108294145-108294167:+] 0.6011 124 0 -22.12 -0.1963 MIMAT0009433 mmu-miR-1960 22258 Usp4 ucGGGAGA---AGAUUGUCGUGACc |:| || | | :||||||| gaCUCACUGAGUGUCCUAGCACUGa 2 21 595 619 [mm9:9:108259476-108259500:+] 0.5004 143 7 -16.23 -0.4756 MIMAT0009435 mmu-miR-1962 22258 Usp4 uaCACAGGGUCACGGUCGGAGa || |||| |||||||| auGUAGCCCA-AACCAGCCUCa 2 21 206 226 [mm9:9:108259087-108259107:+] 0.5006 154 7 -26.43 -0.5692 MIMAT0009455 mmu-miR-1983 22258 Usp4 ucuUUUGUACGAGGUCCACUc :|| ||| ||||||| guuGAAAAUGAAGCAGGUGAg 2 19 92 112 [mm9:9:108258973-108258993:+] 0.4809 154 7 -18.90 -0.4271 MIMAT0009459 mmu-miR-1982* 22258 Usp4 ggaGGGGUCCUGGGAGGGUu |||:: ||||||||| ugaCCCUGCCACCCUCCCAa 2 18 12 31 [mm9:9:108294180-108294199:+] 0.4756 161 7 -27.41 -1.0986 MIMAT0009459 mmu-miR-1982* 22258 Usp4 ggaGGGGUCCUGGGAGGGUu |||:: ||||||||| ugaCCCUGCCACCCUCCCAa 2 18 211 230 [mm9:9:108294180-108294199:+] 0.4756 161 7 -27.41 -0.1696 MIMAT0011221 mmu-miR-2145 22258 Usp4 uugguccggGCUGGGACGa :|||||||| uggccucugUGACCCUGCc 2 11 3 21 [mm9:9:108294171-108294189:+] 0.4500 146 7 -23.72 -0.5745 MIMAT0011221 mmu-miR-2145 22258 Usp4 uugguccgggCUGGGACGa |||||||| uggagaggaaGACCCUGCa 2 10 287 305 [mm9:9:108294455-108294473:+] 0.5042 145 7 -21.13 -0.2212 MIMAT0011221 mmu-miR-2145 22258 Usp4 uugguccgggcUGGGACGa ||||||| aggaaagagaaACCCUGCu 2 9 134 152 [mm9:9:108294302-108294320:+] 0.6354 140 7 -16.49 -1.1547 MIMAT0011221 mmu-miR-2145 22258 Usp4 uugguccgggCUGGGACGa |||||||| uggagaggaaGACCCUGCa 2 10 486 504 [mm9:9:108294455-108294473:+] 0.5042 145 7 -21.13 -0.1969 MIMAT0011221 mmu-miR-2145 22258 Usp4 uugguccgggcUGGGACGa ||||||| aggaaagagaaACCCUGCu 2 9 333 351 [mm9:9:108294302-108294320:+] 0.6354 140 7 -16.49 -1.1270 MIMAT0011222 mmu-miR-2146 22258 Usp4 guGUACCUUGGGA-AGAGGUg || ||:|| | |||||| acCACUGAGCCAUCUCUCCAg 2 19 1059 1079 [mm9:9:108259940-108259960:+] 0.5000 126 6 -18.84 -0.1642 MIMAT0012774 mmu-miR-664 22258 Usp4 auCCGAC-C-CCUCAUUUA-CUUAu ||||| | ||| ||| |||| ugGGCUGUGUGGACAUAAUCGAAUg 2 21 503 527 [mm9:9:108259384-108259408:+] 0.5024 122 0 -19.02 -0.2538 MIMAT0015642 mmu-miR-3471 22258 Usp4 uuACGGAAUGUCAACCUAGAGu | ||| | | ||||||| guUUCCUGAGA-CAGGAUCUCu 2 21 286 306 [mm9:9:108259167-108259187:+] 0.5006 146 7 -16.93 -0.3572 MIMAT0015643 mmu-miR-3472 22258 Usp4 ccaaggaaGGUCGAAGACCGAUAAu ::||: |: ||||||| aaaugaagUUAGUAUUGGGCUAUUg 2 18 550 574 [mm9:9:108294718-108294742:+] 0.5623 153 7 -14.23 -0.7042 MIMAT0015643 mmu-miR-3472 22258 Usp4 ccaaggaaGGUCGAAGACCGAUAAu ::||: |: ||||||| aaaugaagUUAGUAUUGGGCUAUUg 2 18 749 773 [mm9:9:108294718-108294742:+] 0.5623 153 7 -14.23 -0.6597 MIMAT0015645 mmu-miR-3473 22258 Usp4 ccgacucgguaGAGAGGu |||||| acuuucauuagCUCUCCc 2 8 649 666 [mm9:9:108294817-108294834:+] 0.5601 120 6 -11.62 -0.2747 MIMAT0015645 mmu-miR-3473 22258 Usp4 ccgacucgguaGAGAGGu |||||| acuuucauuagCUCUCCc 2 8 848 865 [mm9:9:108294817-108294834:+] 0.5601 120 6 -11.62 -0.2472 MIMAT0015645 mmu-miR-3473 22258 Usp4 ccGACUCGGUAGAGAGGu ||||||||||||||| caCUGAGCCAUCUCUCCa 2 17 1061 1078 [mm9:9:108259942-108259959:+] 0.5000 180 7 -35.11 -0.4006 MIMAT0000124 mmu-miR-15b 22258 Usp4 acaUUUG-GUACUACAC-GACGAu |||: || || || ||||| uccAAAUACAAGAGCUGCCUGCUg 2 20 439 462 [mm9:9:108259320-108259343:+] 0.5120 122 0 -11.18 -0.2325 MIMAT0000134 mmu-miR-124 22258 Usp4 ccGUAAGU-GGCGCACGGAAu || || |: :||||||| gaCACACAGCUUUGUGCCUUu 2 19 1198 1218 [mm9:9:108260079-108260099:+] 0.5007 149 7 -15.95 -0.2105 MIMAT0004528 mmu-miR-125a-3p 22258 Usp4 ccGAGGGUUCUUGGAGUG-GACa :||:|||| :||||| ||| acUUCUCAAG-UUCUCACACUGa 2 21 1176 1197 [mm9:9:108260057-108260078:+] 0.5007 130 0 -24.24 -0.4569 MIMAT0000144 mmu-miR-132 22258 Usp4 gcUGGUACCGACAUCUG--ACAAu |||| |||| ||||| |||| guACCA-GGCUUUAGACCUUGUUu 2 21 261 283 [mm9:9:108259142-108259164:+] 0.5006 126 0 -20.13 -0.5414 MIMAT0000145 mmu-miR-133a 22258 Usp4 gucGACCAACUUCCCCUGGUUu |||| | ||||||: uccCUGGCCUCUGAGGACCAGa 2 20 14 35 [mm9:9:108293373-108293394:+] 0.7491 131 0 -19.29 -0.1174 MIMAT0000147 mmu-miR-135a 22258 Usp4 aguguauccuuauuUUUCGGUAu |||||||| cuaacaacuuuucuAAAGCCAUu 2 10 1084 1106 [mm9:9:108259965-108259987:+] 0.5007 145 7 -10.78 -0.6029 MIMAT0000150 mmu-miR-138 22258 Usp4 gcCGGACUAAGUGUUGUGGUCGa ||| || |||||||||| cuGCCACCCUCCCAACACCAGCa 2 22 17 39 [mm9:9:108294185-108294207:+] 0.4129 165 7 -22.51 -0.4081 MIMAT0000150 mmu-miR-138 22258 Usp4 gcCGGACUAAGUGUUGUGGUCGa ||| || |||||||||| cuGCCACCCUCCCAACACCAGCa 2 22 216 238 [mm9:9:108294185-108294207:+] 0.4129 165 7 -22.51 -0.3725 MIMAT0000151 mmu-miR-140 22258 Usp4 gaugguaucccauuUUGGUGAc ||||||| aagucagugcucuuAACCACUg 2 9 1044 1065 [mm9:9:108259925-108259946:+] 0.5000 140 7 -16.42 -0.2172 MIMAT0000158 mmu-miR-146a 22258 Usp4 uugGGUACCUUAAGUC-AAGAGu |:|| | ||||| ||||| gggCUAUUGUUUUCAGUUUCUCa 2 20 566 588 [mm9:9:108294734-108294756:+] 0.5624 131 0 -18.10 -0.9258 MIMAT0000158 mmu-miR-146a 22258 Usp4 uugGGUACCUUAAGUC-AAGAGu |:|| | ||||| ||||| gggCUAUUGUUUUCAGUUUCUCa 2 20 765 787 [mm9:9:108294734-108294756:+] 0.5624 131 0 -18.10 -0.8859 MIMAT0000158 mmu-miR-146a 22258 Usp4 uuGGGUAC-CUU-AAG---UCAAGAGu | :| | ||| ||| ||||||| ugCAUAGGAGAACUUCUCAAGUUCUCa 2 21 1165 1191 [mm9:9:108260046-108260072:+] 0.5007 145 7 -18.03 -0.7168 MIMAT0000162 mmu-miR-152 22258 Usp4 gguucaagACAGUA-CGUGACu |||| | |||||| ucacugagUGUCCUAGCACUGa 2 14 598 619 [mm9:9:108259479-108259500:+] 0.5004 121 6 -17.86 -0.3358 MIMAT0000208 mmu-miR-10b 22258 Usp4 guguuuAAGCCAAGA---UGUCCCAu ||:| ||:| ||||||| uuuguuUUUGUUUUUGAAACAGGGUu 2 18 138 163 [mm9:9:108259019-108259044:+] 0.4908 152 7 -13.71 -0.9206 MIMAT0000212 mmu-miR-183 22258 Usp4 ucacuUAAGAUGGUCACG-GUAu |||: || |||| ||| aagccAUUUCCCCUGUGCUCAUg 2 18 1099 1121 [mm9:9:108259980-108260002:+] 0.5007 121 0 -13.93 -0.2328 MIMAT0000214 mmu-miR-185 22258 Usp4 aguCCUUGACGG-AA-AGAGAGGu |||||| :| || |||||| uguGGAACUUUCAUUAGCUCUCCc 2 20 643 666 [mm9:9:108294811-108294834:+] 0.5601 133 6 -19.82 -0.2747 MIMAT0000214 mmu-miR-185 22258 Usp4 aguCCUUGACGG-AA-AGAGAGGu |||||| :| || |||||| uguGGAACUUUCAUUAGCUCUCCc 2 20 842 865 [mm9:9:108294811-108294834:+] 0.5601 133 6 -19.82 -0.2472 MIMAT0000214 mmu-miR-185 22258 Usp4 aguccuUGAC-GGAAAGAGAGGu |||| | ||||||| uuaaccACUGAGCCAUCUCUCCa 2 17 1056 1078 [mm9:9:108259937-108259959:+] 0.5000 147 7 -18.80 -0.4037 MIMAT0000215 mmu-miR-186 22258 Usp4 ucggguuuuccucuuAAGAAAc |||||| uucuuuucuuuucuuUUCUUUc 2 8 852 873 [mm9:9:108259733-108259754:+] 0.5006 120 6 -3.59 -0.1194 MIMAT0000215 mmu-miR-186 22258 Usp4 ucggguuuuccucuuAAGAAAc |||||| ucuuucuuucuuucuUUCUUUc 2 8 884 905 [mm9:9:108259765-108259786:+] 0.5003 120 6 -3.59 -0.1006 MIMAT0000219 mmu-miR-24 22258 Usp4 gacaAGGACGACU--UGACUCGGu | || :| | |||||||| ucagUGCUCUUAACCACUGAGCCa 2 19 1047 1070 [mm9:9:108259928-108259951:+] 0.5000 149 7 -19.24 -0.6061 MIMAT0000381 mmu-miR-34c 22258 Usp4 cguuagucgauugauGUGACGGa ||||||| uucuguuuuguccccCACUGCCc 2 9 603 625 [mm9:9:108294771-108294793:+] 0.5626 140 7 -13.24 -0.4109 MIMAT0000381 mmu-miR-34c 22258 Usp4 cguuagucgauugauGUGACGGa ||||||| uucuguuuuguccccCACUGCCc 2 9 802 824 [mm9:9:108294771-108294793:+] 0.5626 140 7 -13.24 -0.3744 MIMAT0000381 mmu-miR-34c 22258 Usp4 cgUUAGUCGAUUGAUGUGACGGa :| || |:| ||||||| caGAACACAUGAGAUCACUGCCu 2 22 1225 1247 [mm9:9:108260106-108260128:+] 0.5007 149 7 -16.72 -0.5209 MIMAT0000382 mmu-miR-34b-5p 22258 Usp4 uguuagucgauuaauGUGACGGa ||||||| uucuguuuuguccccCACUGCCc 2 9 603 625 [mm9:9:108294771-108294793:+] 0.5626 140 7 -13.04 -0.4109 MIMAT0000382 mmu-miR-34b-5p 22258 Usp4 uguuagucgauuaauGUGACGGa ||||||| uucuguuuuguccccCACUGCCc 2 9 802 824 [mm9:9:108294771-108294793:+] 0.5626 140 7 -13.04 -0.3744 MIMAT0000382 mmu-miR-34b-5p 22258 Usp4 ugUUAGUCGAUUAAUGUGACGGa :| || |:| ||||||| caGAACACAUGAGAUCACUGCCu 2 22 1225 1247 [mm9:9:108260106-108260128:+] 0.5007 149 7 -17.30 -0.5209 MIMAT0000528 mmu-miR-18a 22258 Usp4 gaUAGACGUGAUCU-ACGUGGAAu ||| | | |: | |||||||| uaAUC-G-AAUGCAUUGCACCUUg 2 22 518 539 [mm9:9:108259399-108259420:+] 0.5024 148 7 -17.92 -0.2148 MIMAT0000542 mmu-miR-34a 22258 Usp4 uguuggucgauucuGUGACGGu ||||||| ucuguuuuguccccCACUGCCc 2 9 604 625 [mm9:9:108294772-108294793:+] 0.5626 140 7 -13.65 -0.4109 MIMAT0000542 mmu-miR-34a 22258 Usp4 uguuggucgauucuGUGACGGu ||||||| ucuguuuuguccccCACUGCCc 2 9 803 824 [mm9:9:108294772-108294793:+] 0.5626 140 7 -13.65 -0.3744 MIMAT0000542 mmu-miR-34a 22258 Usp4 ugUUGGUCGAUUCU-GUGACGGu :| || |:||| ||||||| caGAACACAUGAGAUCACUGCCu 2 21 1225 1247 [mm9:9:108260106-108260128:+] 0.5007 159 7 -19.92 -0.5174 MIMAT0000548 mmu-miR-322 22258 Usp4 agGUUU-UGUACUUAAC-GACGAc |||| ||| ||: || ||||| ucCAAAUACAAGAGCUGCCUGCUg 2 21 439 462 [mm9:9:108259320-108259343:+] 0.5120 135 0 -23.51 -0.2284 MIMAT0000567 mmu-miR-329 22258 Usp4 uuuuuccaauCGACCCACACAa ||| ||||||| uguuagaccuGCUAGGUGUGUa 2 13 6 27 [mm9:9:108258887-108258908:+] 0.4945 152 7 -16.55 -0.3692 MIMAT0000567 mmu-miR-329 22258 Usp4 uuuuuccAAUCGACCC-ACACAa | ||:|||| ||||| cagcucuUCAGUUGGGCUGUGUg 2 16 491 513 [mm9:9:108259372-108259394:+] 0.5024 127 0 -17.50 -0.1537 MIMAT0000582 mmu-miR-338-3p 22258 Usp4 guuguuuuAGUGAC-UACGACCu || :|| ||||||| cuccugccUC-UUGUAUGCUGGa 2 15 338 359 [mm9:9:108259219-108259240:+] 0.5006 143 7 -14.83 -0.6640 MIMAT0000590 mmu-miR-342-3p 22258 Usp4 ugcCCACGCUAAAGA-CACACUCu | || ||| || ||||||| gauGUUGAGAUAACUAGUGUGAGc 2 21 753 776 [mm9:9:108259634-108259657:+] 0.5000 159 7 -16.95 -0.2997 MIMAT0000612 mmu-miR-135b 22258 Usp4 aguguauccuuacuUUUCGGUAu |||||||| cuaacaacuuuucuAAAGCCAUu 2 10 1084 1106 [mm9:9:108259965-108259987:+] 0.5007 145 7 -10.82 -0.6029 MIMAT0000648 mmu-miR-10a 22258 Usp4 guguuuAAGCCUAGA---UGUCCCAu ||:| |:| ||||||| uuuguuUUUGUUUUUGAAACAGGGUu 2 18 138 163 [mm9:9:108259019-108259044:+] 0.4908 144 7 -12.76 -0.9173 MIMAT0000661 mmu-miR-214 22258 Usp4 ugacggacagacACGGACGACa ||||||||| aaauacaagagcUGCCUGCUGg 2 11 442 463 [mm9:9:108259323-108259344:+] 0.5120 150 7 -16.82 -0.1344 MIMAT0000662 mmu-miR-216a 22258 Usp4 agUGUCAACGG--UC--GACUCUAAu | || | || || |||||||| ucAGAGAUCCCUAAGUACUGAGAUUa 2 21 230 255 [mm9:9:108259111-108259136:+] 0.5006 150 7 -17.02 -0.5254 MIMAT0000666 mmu-miR-320 22258 Usp4 agcgggagaguUGGGUCGAAAa || ||||||| cacacugagacACACAGCUUUg 2 12 1190 1211 [mm9:9:108260071-108260092:+] 0.5007 147 7 -12.12 -0.1658 MIMAT0000669 mmu-miR-221 22258 Usp4 cuuugggucgucuGUUACAUCGa | ||||||| guucuggaacuuuCUAUGUAGCc 2 11 191 213 [mm9:9:108259072-108259094:+] 0.5007 142 7 -12.81 -0.4405 MIMAT0000670 mmu-miR-222 22258 Usp4 ugggucaucggucUACAUCGa ||||||| ucuggaacuuucuAUGUAGCc 2 9 193 213 [mm9:9:108259074-108259094:+] 0.5007 140 7 -11.89 -0.4405 MIMAT0004684 mmu-miR-362-3p 22258 Usp4 acUUAGGAACUUGUCCACACAa |: ||| : :|||||||| uuAGACCU--GCUAGGUGUGUa 2 21 8 27 [mm9:9:108258889-108258908:+] 0.4945 149 7 -18.75 -0.3576 MIMAT0004684 mmu-miR-362-3p 22258 Usp4 acuuAGGAACUUGUCCAC-ACAa ||:||||: |||| ||| uuuuUCUUUGAGAUGGUGUUGUa 2 19 641 663 [mm9:9:108259522-108259544:+] 0.5004 130 0 -16.52 -0.5276 MIMAT0000746 mmu-miR-381 22258 Usp4 ugucucucGAACGG-GAACAUAu | |||| ||||||| ggucaucuCCUGCCUCUUGUAUg 2 15 332 354 [mm9:9:108259213-108259235:+] 0.5006 153 7 -16.20 -0.1675 MIMAT0000747 mmu-miR-382 22258 Usp4 gcuuAGGU--GGUGCUUGUUGAAg |||| || | |||||||| ucucUCCAGCCCUCUAACAACUUu 2 19 1071 1094 [mm9:9:108259952-108259975:+] 0.5004 161 7 -15.60 -0.5739 MIMAT0000747 mmu-miR-382 22258 Usp4 gcuUAGGUGGUGCUUGUUGAAg || | : | |||||||| accAUGCUUACCUAACAACUUc 2 20 778 799 [mm9:9:108259659-108259680:+] 0.5000 151 7 -17.46 -0.5235 MIMAT0000769 mmu-miR-133b 22258 Usp4 aucGACCAACUUCCCCUGGUUu |||| | ||||||: uccCUGGCCUCUGAGGACCAGa 2 20 14 35 [mm9:9:108293373-108293394:+] 0.7491 131 0 -19.29 -0.1174 MIMAT0001533 mmu-miR-448 22258 Usp4 uacCCUGUAGGAUGUAUACGUu | | :| :| :||||||| aacGUAGGUGUU-UAUAUGCAu 2 20 1149 1169 [mm9:9:108260030-108260050:+] 0.5007 145 7 -10.74 -0.6169 MIMAT0001542 mmu-miR-449a 22258 Usp4 uggucgauuguuauGUGACGGu ||||||| ucuguuuuguccccCACUGCCc 2 9 604 625 [mm9:9:108294772-108294793:+] 0.5626 140 7 -13.17 -0.4047 MIMAT0001542 mmu-miR-449a 22258 Usp4 uggucgauuguuauGUGACGGu ||||||| ucuguuuuguccccCACUGCCc 2 9 803 824 [mm9:9:108294772-108294793:+] 0.5626 140 7 -13.17 -0.3685 MIMAT0001542 mmu-miR-449a 22258 Usp4 ugGUCGAUUGUUAUGUGACGGu || |:| :|| ||||||| aaCACAUGA-GAU-CACUGCCu 2 21 1228 1247 [mm9:9:108260109-108260128:+] 0.5007 148 7 -14.06 -0.4905 MIMAT0001632 mmu-miR-451 22258 Usp4 uugagUCAUUACCAUUGCCAAa || :||| ||||||| ccgggAG-GAUGAAAACGGUUa 2 18 67 87 [mm9:9:108258948-108258968:+] 0.4782 151 7 -15.39 -0.6758 MIMAT0003128 mmu-miR-485 22258 Usp4 cuUAAGUAGUG-CCGGUCGGAGa || :| | | |||||||| cuAUGUAGCCCAAACCAGCCUCa 2 21 204 226 [mm9:9:108259085-108259107:+] 0.5006 147 7 -16.61 -0.5801 MIMAT0003168 mmu-miR-543 22258 Usp4 uucUUCAC-GUGGCGC-UUACAAa |:||| ||: :| |||||| agcAGGUGAGACUUUGUAAUGUUu 2 20 103 126 [mm9:9:108258984-108259007:+] 0.4809 122 6 -14.94 -0.5468 MIMAT0003182 mmu-miR-494 22258 Usp4 cuccaaaGGGCACAUACAAAGu |::|| |||||||| uuuagacCUUGUUUAUGUUUCc 2 16 270 291 [mm9:9:108259151-108259172:+] 0.5006 159 7 -13.47 -0.3156 MIMAT0003183 mmu-miR-376c 22258 Usp4 ugcACUUUAAAGGAGAUACAa |||:| |||||||| uucUGAGAAGGGCUCUAUGUu 2 19 153 173 [mm9:9:108294321-108294341:+] 0.6354 154 7 -15.40 -0.4166 MIMAT0003183 mmu-miR-376c 22258 Usp4 ugcacUUUAAAGGAGAUACAa ||| | :||||||| uugauAAAGUGAUUCUAUGUg 2 17 626 646 [mm9:9:108294794-108294814:+] 0.5601 152 7 -11.09 -0.4915 MIMAT0003183 mmu-miR-376c 22258 Usp4 ugcACUUUAAAGGAGAUACAa |||:| |||||||| uucUGAGAAGGGCUCUAUGUu 2 19 352 372 [mm9:9:108294321-108294341:+] 0.6354 154 7 -15.40 -0.3756 MIMAT0003183 mmu-miR-376c 22258 Usp4 ugcacUUUAAAGGAGAUACAa ||| | :||||||| uugauAAAGUGAUUCUAUGUg 2 17 825 845 [mm9:9:108294794-108294814:+] 0.5601 152 7 -11.09 -0.4512 MIMAT0003183 mmu-miR-376c 22258 Usp4 ugcACUUUAAAGGAGAUACAa ||:|| || ||||||| uucUGGAACUU--UCUAUGUa 2 19 192 210 [mm9:9:108259073-108259091:+] 0.5007 155 7 -11.70 -0.5164 MIMAT0003893 mmu-miR-761 22258 Usp4 acacagucaaagugGGACGACg ||||||| aaauacaagagcugCCUGCUGg 2 9 442 463 [mm9:9:108259323-108259344:+] 0.5120 140 7 -14.66 -0.1305 MIMAT0003453 mmu-miR-497 22258 Usp4 auGUUUGGUG-UCAC-AC-GACGAc |||| :|| || | || ||||| ucCAAA-UACAAGAGCUGCCUGCUg 2 21 439 462 [mm9:9:108259320-108259343:+] 0.5120 120 0 -16.19 -0.2304 MIMAT0003456 mmu-miR-495 22258 Usp4 uucuucACGUGGUA-CAAACAAa || |:: | ||||||| uguuuuUGGAUUUUGGUUUGUUu 2 17 122 144 [mm9:9:108259003-108259025:+] 0.4809 147 7 -9.91 -0.6856 MIMAT0003460 mmu-miR-449c 22258 Usp4 ggucgaucguuacGUGACGGa ||||||| cuguuuuguccccCACUGCCc 2 9 605 625 [mm9:9:108294773-108294793:+] 0.5626 140 7 -12.35 -0.4047 MIMAT0003460 mmu-miR-449c 22258 Usp4 ggucgaucguuacGUGACGGa ||||||| cuguuuuguccccCACUGCCc 2 9 804 824 [mm9:9:108294773-108294793:+] 0.5626 140 7 -12.35 -0.3685 MIMAT0003460 mmu-miR-449c 22258 Usp4 ggucgauCGUUACGUGACGGa | :|| ||||||| aacacauGAGAU-CACUGCCu 2 15 1228 1247 [mm9:9:108260109-108260128:+] 0.5007 144 7 -15.43 -0.4940 MIMAT0003475 mmu-miR-146b 22258 Usp4 ucgGAUACCUUAAGUC-AAGAGu |||| | ||||| ||||| gggCUAUUGUUUUCAGUUUCUCa 2 20 566 588 [mm9:9:108294734-108294756:+] 0.5624 135 0 -19.73 -0.9258 MIMAT0003475 mmu-miR-146b 22258 Usp4 ucgGAUACCUUAAGUC-AAGAGu |||| | ||||| ||||| gggCUAUUGUUUUCAGUUUCUCa 2 20 765 787 [mm9:9:108294734-108294756:+] 0.5624 135 0 -19.73 -0.8859 MIMAT0003475 mmu-miR-146b 22258 Usp4 ucGGAUAC-CUU-AAG---UCAAGAGu | || | ||| ||| ||||||| ugCAUAGGAGAACUUCUCAAGUUCUCa 2 21 1165 1191 [mm9:9:108260046-108260072:+] 0.5007 149 7 -16.03 -0.7168 MIMAT0004847 mmu-miR-882 22258 Usp4 ugauuacgcgauugaGAGAGGa |||||| uggaacuuucauuagCUCUCCc 2 8 645 666 [mm9:9:108294813-108294834:+] 0.5601 120 6 -17.08 -0.2747 MIMAT0004847 mmu-miR-882 22258 Usp4 ugauuacgcgauugaGAGAGGa |||||| uggaacuuucauuagCUCUCCc 2 8 844 865 [mm9:9:108294813-108294834:+] 0.5601 120 6 -17.08 -0.2472 MIMAT0004847 mmu-miR-882 22258 Usp4 ugaUUACGCGAUUGAGAGAGGa | || || | ||||||| accACUGAGCCA--UCUCUCCa 2 20 1059 1078 [mm9:9:108259940-108259959:+] 0.5000 148 7 -16.46 -0.3831 MIMAT0004853 mmu-miR-874 22258 Usp4 agccaggGAGCCCGGUCCCGUc ||| |||||||| ugagcagCUCACACCAGGGCAu 2 16 141 162 [mm9:9:108294110-108294131:+] 0.6138 151 7 -19.87 -0.1130 MIMAT0004855 mmu-miR-876-3p 22258 Usp4 acUUAAUGA-AACAUUUGGUGAu |:| | | | | ||||||| gaAGUCAGUGCUCUUAACCACUg 2 21 1043 1065 [mm9:9:108259924-108259946:+] 0.5000 147 7 -13.47 -0.2113 MIMAT0004858 mmu-miR-18b 22258 Usp4 gaUUGUCGUGAUCU-ACGUGGAAu ||: | | |: | |||||||| auAAUCG-AAUGCAUUGCACCUUg 2 22 517 539 [mm9:9:108259398-108259420:+] 0.5024 150 7 -16.60 -0.2148 MIMAT0005447 mmu-miR-449b 22258 Usp4 cggucgauuguuGUGACGGa ||||||| uguuuuguccccCACUGCCc 2 9 606 625 [mm9:9:108294774-108294793:+] 0.5626 140 7 -12.08 -0.4109 MIMAT0005447 mmu-miR-449b 22258 Usp4 cggucgauuguuGUGACGGa ||||||| uguuuuguccccCACUGCCc 2 9 805 824 [mm9:9:108294774-108294793:+] 0.5626 140 7 -12.08 -0.3744 MIMAT0005447 mmu-miR-449b 22258 Usp4 cgGUCGAUUGUUGUGACGGa || |:| | ||||||| aaCACAUGAGAUCACUGCCu 2 19 1228 1247 [mm9:9:108260109-108260128:+] 0.5007 154 7 -16.58 -0.5209 MIMAT0005850 mmu-miR-1192 22258 Usp4 uuAAACCAGACAAACAAACAAa ||||| :| || ||||||| uuUUUGGAUU-UUGGUUUGUUu 2 21 124 144 [mm9:9:108259005-108259025:+] 0.4809 166 7 -13.70 -0.6893

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G004313 Usp4 Mus musculus 22258

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Usp4 mmu-miR-692 beg:126 end:144 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& |||| ||||||| &5' ----GAGGAAGG-AAAGAGA- 3' Usp4 mmu-miR-193star beg:283 end:302 pic:3' AGTAGAACGGG-CG-TTTCTGGGT 5'& |. | .||||||| &5' -------GTGGAGAGGAAGACCC- 3' Usp4 mmu-miR-193star beg:317 end:334 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& ||| .|||||||| &5' -------GCCAT-GAAGACCCA 3' Usp4 mmu-miR-469 beg:163 end:181 pic:3' CCTGTGGTTCTAGTTACT-TTCTCCGT 5'& || ||| ||||||| &5' -----------TCTATGTTAAGAGGC- 3' Usp4 mmu-miR-2145 beg:142 end:153 pic:3' TTGGTCCGGGCTGGGACGA 5'& |||||||| &5' -----------ACCCTGCT 3' Usp4 mmu-miR-2145 beg:289 end:305 pic:3' TTGGTCCGGGCTGGGACGA 5'& ||| |||||||| &5' ----AGGAA-GACCCTGC- 3' Usp4 mmu-miR-767 beg:300 end:320 pic:3' ACGAGTCTGTTGGTACCACGT 5'& || | | ||||||||| &5' -GCA---ATGAGCATGGTGCA 3' Usp4 mmu-miR-138 beg:23 end:39 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& || |||||||||| &5' ---------TCCCAACACCAGC- 3' Usp4 mmu-miR-34a beg:615 end:625 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||||||| &5' --------------CACTGCC- 3' Usp4 mmu-miR-34b-5p beg:615 end:625 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||||||| &5' ---------------CACTGCC- 3' Usp4 mmu-miR-449a beg:615 end:625 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||||||| &5' --------------CACTGCC- 3' Usp4 mmu-miR-449b beg:615 end:625 pic:3' CGGTCGATTGTTGTGACGGA 5'& ||||||| &5' ------------CACTGCC- 3' Usp4 mghv-miR-M1-6 beg:568 end:586 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& |.|.. ||||||| &5' ----CTATTGTTTTCAGTTTC- 3' Usp4 mmu-miR-3475 beg:403 end:422 pic:3' AAGTTTGGTACACGGAGGTCT 5'& .|||||| |||||||| &5' --TAAACCAA--GCCTCCAG- 3' Usp4 mmu-miR-1982star beg:12 end:32 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||.. |||||||||| &5' ---CCCTGCCACCCTCCCAA 3' Usp4 mmu-miR-130bstar beg:132 end:143 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |||||||| &5' -------------GGAAAGAG- 3' Usp4 mcmv-miR-M23-2 beg:402 end:421 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |. ||| |||.||| &5' --GTAA-ACCAA-GCCTCCA- 3' Usp4 mcmv-miR-M87-1 beg:328 end:347 pic:3' CGACGGC-GACGGCTGCCGACGGA 5'& || |||| ||||||. &5' ----CCACCTGCAG--GGCTGCT- 3' Usp4 mghv-miR-M1-2 beg:235 end:251 pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& ||| |||||.|| &5' -------GGGCT--GGGGTTTG 3' Usp4 mmu-let-7b beg:95 end:115 pic:3' TTGGTGTGTTG--GATGATGGAGT 5'& |||| | | | |.|||||| &5' -ACCAGATGAGGAC-ATTACCTC- 3' Usp4 mmu-miR-1188 beg:362 end:388 pic:3' AGGAC--CGGGT-TGGAGTGTGGT 5'& |.||| ||||| ||. | |||| &5' TTCTGGTGCCCACACTGCTCACC- 3' Usp4 mmu-miR-124star beg:298 end:315 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& |.|| |||.||.| &5' --------CTGCAATGAGCATG 3' Usp4 mmu-miR-129-3p beg:146 end:166 pic:3' TACGAAAAACCCCATTCCCGAA 5'& |||||| || ||||||| &5' -TGCTTTCTGAG--AAGGGCT- 3' Usp4 mmu-miR-143 beg:250 end:273 pic:3' CTCGATGTCA-CGAA-GTAGAGT 5'& || ||||| || ..||||| &5' --GC-ACAGTGGCATGTGTCTCA 3' Usp4 mmu-miR-145star beg:44 end:54 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||||. &5' --------------CCAGGAG- 3' Usp4 mmu-miR-146a beg:460 end:480 pic:3' TTGGGTACCTTAA-GTCAAGAGT 5'& |||| || .||||.|| &5' -----ATGGGCTTATAGTTTTC- 3' Usp4 mmu-miR-148astar beg:514 end:529 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& ||||||||.||| &5' ----------TCTCAGAATTTT 3' Usp4 mmu-miR-186 beg:432 end:451 pic:3' TCGGGTTTTCCTCTTAAGAAAC 5'& |.|| |.||||||| &5' -GTCCTCT-----AGTTCTTTG 3' Usp4 mmu-miR-1903 beg:114 end:137 pic:3' ACAGAGTCC-TTCTTCTTCTTCC 5'& ||. .||||||.||||| &5' ---CTTTTATGAGAAGAGGAAGG 3' Usp4 mmu-miR-1907 beg:435 end:457 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& ||||.|| |.||.|||||.|| &5' -CCTCTAG-TTCTTTGCTGTTC 3' Usp4 mmu-miR-1946a beg:383 end:401 pic:3' TTTTCACACACGGTGGTGA-CGGGCCGA 5'& || ||| | |.|.||| &5' -----------CC-CCAGTAGTCTGGC- 3' Usp4 mmu-miR-1952 beg:271 end:293 pic:3' GTCTTCC---TCCCACCTCT 5'& .|| || ||||||| &5' -GGATTCCAAAGAGTGGAGA 3' Usp4 mmu-miR-195 beg:434 end:456 pic:3' CGGTTATAAAGACACGACGAT 5'& || || |||| |||||.| &5' -CCTCTAGTTCTTTGCTGTT- 3' Usp4 mmu-miR-1959 beg:22 end:45 pic:3' GAGGTGACTCGATGTAGGGG 5'& |||| .|||||.| &5' CTCCCAACACCAGCATCCTC 3' Usp4 mmu-miR-1959 beg:649 end:668 pic:3' GAGGTGACTCGATGTAGGGG 5'& |.||.| |||| | ||||. &5' -TTCATT-AGCT-C-TCCCT 3' Usp4 mmu-miR-196a beg:95 end:115 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& |||. || |.||||| &5' -CCAGATGAG-GACATTACCT- 3' Usp4 mmu-miR-1970 beg:248 end:265 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& .| | |||||.||. &5' --------GTGCACAGTGGCAT- 3' Usp4 mmu-miR-1970 beg:47 end:68 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& ..|| ||||. |||.||| &5' -GGAGAATATCT---GTGGCAC- 3' Usp4 mmu-miR-201 beg:337 end:359 pic:3' TTCTTGTTACGGAATGACTCAT 5'& ||..| || ||||.|| &5' -AGGGCTGCTCCGAACTGGGT- 3' Usp4 mmu-miR-207 beg:280 end:295 pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& ||||. |||||.| &5' --------AGAGT--GGAGAGG- 3' Usp4 mmu-miR-2145 beg:1 end:21 pic:3' TTGGTCCGGG----CTGGGACGA 5'& ||||. |||||||| &5' -----GGCCTCTGTGACCCTGC- 3' Usp4 mmu-miR-23a beg:290 end:309 pic:3' CCTTTAGGGACCGTTACACTA 5'& ||||. |||| |||||| &5' GGAAGACCCT-GCAATG---- 3' Usp4 mmu-miR-293 beg:50 end:69 pic:3' TGTGATGTTTG-AGACGCCGTGA 5'& .||. ||||.|||||| &5' -------GAATATCTGTGGCACT 3' Usp4 mmu-miR-299star beg:391 end:413 pic:3' TACATACACCC-TGCCATTTGGT 5'& .| ||| || |||||||| &5' ----GTCTGGCCACAGTAAACCA 3' Usp4 mmu-miR-29astar beg:540 end:563 pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& | .|. ||| |||.|.||| &5' --GGTTATGAAATGAAGTTAGT 3' Usp4 mmu-miR-29bstar beg:81 end:101 pic:3' ATTTGGTGGTATAC-TTTGGTCG 5'& .|.|| ||||||| &5' -----TATCAATCTCAAACCAG- 3' Usp4 mmu-miR-30c-1star beg:8 end:31 pic:3' CCTCATTTGTTGGGA------GAGGGTC 5'& . ||||| |||||| &5' -------GTGACCCTGCCACCCTCCCA- 3' Usp4 mmu-miR-30c-2star beg:509 end:523 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& . |||||.||| &5' -----------TGTTCTCTCAG 3' Usp4 mmu-miR-30c-2star beg:8 end:31 pic:3' TCTCATTTGT-CGGAA-GAGGGTC 5'& ||.| | ||| |||||| &5' ---GTGACCCTGCCACCCTCCCA- 3' Usp4 mmu-miR-335-3p beg:308 end:330 pic:3' CCAGT-CCTCGTTATTACTTTTT 5'& || || |||. |||||.| &5' ---CATGGTGCAGCCATGAAGA- 3' Usp4 mmu-miR-342-5p beg:22 end:44 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& ||| ||| ||||.||. &5' CTCCCA-ACACC-AGCATCCT- 3' Usp4 mmu-miR-34a beg:364 end:384 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& | |. |||||||. &5' ----CTGGTGCCCACACTGCT- 3' Usp4 mmu-miR-34b-5p beg:364 end:384 pic:3' TGTTAGTCGATTAA---TGTGACGGA 5'& ||..| |||||||. &5' --------CTGGTGCCCACACTGCT- 3' Usp4 mmu-miR-34c beg:363 end:384 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || | |. | |||||||. &5' ----TCTGGTGCCCACACTGCT- 3' Usp4 mmu-miR-361 beg:353 end:373 pic:3' CATGGGGACC-----TCTAAGACTATT 5'& ||| .|||||||.|. &5' -------TGGGTTTTGGATTCTGGTG- 3' Usp4 mmu-miR-376c beg:153 end:174 pic:3' TGCACTTTAAAGGAGATACAA 5'& |||.| ||||||||| &5' ---TGAGAAGGGCTCTATGTT 3' Usp4 mmu-miR-431 beg:325 end:344 pic:3' ACGTACTGCC-GGACGTTCTGT 5'& ||| ||||||.|.| &5' -----GACCCACCTGCAGGGC- 3' Usp4 mmu-miR-431star beg:290 end:312 pic:3' TCTTC-GGGACGTTCTGCTGGAC 5'& .|||| ||||||| |.|| | &5' GGAAGACCCTGCA--ATGAGC-- 3' Usp4 mmu-miR-449a beg:364 end:384 pic:3' TGGTCGATTGTTATGTGACGGT 5'& | |. .| |||||||. &5' -CTGGT--GCCC-ACACTGCT- 3' Usp4 mmu-miR-449b beg:364 end:384 pic:3' CGGTCGATTGTTGTGACGGA 5'& | |. | |||||||. &5' -CTGGTGC-CCACACTGCT- 3' Usp4 mmu-miR-449c beg:604 end:625 pic:3' GGTCGAT-CGTTACGTGACGGA 5'& |.| |. ||||||| &5' ---GTTTTGTCCCCCACTGCC- 3' Usp4 mmu-miR-449c beg:364 end:384 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& ||.|. ||||||. &5' ----CTGGTGCCCACACTGCT- 3' Usp4 mmu-miR-503 beg:440 end:456 pic:3' GACGTCATGACAAG-GGCGACGAT 5'& |||| ..||||.| &5' ----------GTTCTTTGCTGTT- 3' Usp4 mmu-miR-509-5p beg:230 end:248 pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||||. . ||||.|| &5' ---ATTGTGGG---CTGGGGT- 3' Usp4 mmu-miR-546 beg:50 end:69 pic:3' CTG--AGGCACGGTGGTA 5'& || ||.||| |||. &5' GAATATCTGTGGCACT-- 3' Usp4 mmu-miR-671-5p beg:525 end:547 pic:3' GAGGTCGG-GGAGGTCCCGAAGGA 5'& ||||||| |||.| ||.| &5' -TCCAGCCGCCTTCCCGGTT---- 3' Usp4 mmu-miR-675-5p beg:218 end:243 pic:3' TGACACC-CGGGA-AAGGCGTGGT 5'& |||||| ||.| || .| .|. &5' -CTGTGGAGCTCAATTGTGGGCT- 3' Usp4 mmu-miR-684 beg:281 end:300 pic:3' AACTGAACTTC-CCTTTTGA 5'& || ||.|| ||||.|| &5' --GAG-TGGAGAGGAAGAC- 3' Usp4 mmu-miR-693-3p beg:324 end:347 pic:3' AATGTC-GGTGTAGAC-TTTCGACG 5'& || || || ||| |..||||| &5' ----AGACC-CACCTGCAGGGCTGC 3' Usp4 mmu-miR-694 beg:561 end:582 pic:3' GAAGTCCGTT-GTAAAAGTC 5'& | ||| ..||||||| &5' --TTGGGCTATTGTTTTCAG 3' Usp4 mmu-miR-698 beg:125 end:145 pic:3' TC-CCTTCCTTTGCTCTTAC 5'& || ||||||||| ||||| &5' AGAGGAAGGAAA-GAGAA-- 3' Usp4 mmu-miR-704 beg:253 end:271 pic:3' GATCCTCGTC-TCGTGTACAGA 5'& ||| .|||..||||| &5' -------CAGTGGCATGTGTCT 3' Usp4 mmu-miR-741 beg:499 end:522 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& ||||. || ||||||| &5' TCTATTCTCT-TGT--TCTCTCA 3' Usp4 mmu-miR-7a beg:469 end:482 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& ||||.|||.| &5' -------------TAGTTTTCTA 3' Usp4 mmu-miR-875-3p beg:562 end:582 pic:3' GTATCGGAGTCATAAAAGTCC 5'& |.| || |.||||||| &5' --TGGGCTAT-TGTTTTCAG- 3' Usp4 mmu-miR-876-5p beg:577 end:606 pic:3' ATCACTAAGTGTCT------CTTTAGGT 5'& ||| ||||||| |||.|.| &5' -AGTTTCTCACAGACTCCTAGAAGTTC- 3' Usp4 mmu-miR-881 beg:243 end:260 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& .|| | .|||||| &5' ---GTTTGGT----GCACAGT- 3' Usp4 mmu-miR-883b-5p beg:565 end:583 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& |||| . ||.||||| &5' -----GCTA-TTGTTTTCAGT- 3' Usp4 mmu-miR-9 beg:270 end:286 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |.||| ||||||| &5' ---------TGGATT-CCAAAGA 3' Usp4 mmu-miR-92astar beg:604 end:622 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || ||.| ||||||. &5' GTTTTGTC------CCCCACT- 3' Usp4 mmu-miR-376c beg:631 end:646 pic:3' TGCACTTTAAAGGAGATACAA 5'& |||| .||||||| &5' --GTGA------TTCTATGT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Usp4; Unp mmu-let-7c 94 118 -UUGGUA---UGUUGGAUGAUGGAGU ||||| | :|| |:|||||| AAACCAGAUGAGGAC--AUUACCUCC Usp4; Unp mmu-let-7d 8 29 UGAUACGUUGGAUGAU-GGAGA ||:|| |||:| |||| UCUGUGAC-CCUGCCACCCUCC Usp4; Unp mmu-miR-103 321 349 AGUA--UC-GGGAC-AUGUUACGACGA- ||| || ||| |:|| |||||| CCAUGAAGACCCACCUGCAGGGCUGCUC Usp4; Unp mmu-miR-107 312 349 -ACUA--UCGGGAC----------AUGUUACGACGA- ||:| |||| || |:|| |||||| AUGGUGCAGCCAUGAAGACCCACCUGCAGGGCUGCUC Usp4; Unp mmu-miR-10a 321 344 -GUGUUUAAGCCUAGAUGUCCCAU ||::|| ||:||||| CCAUGAAGACCCACCUGCAGGGC- Usp4; Unp mmu-miR-125a 240 278 -GUGUCCAAUUUCC---------------CAGAGUCCCU- | :|||| || |||||| ||| GCUGGGGUUU--GGUGCACAGUGGCAUGUGUCUCAUGGAU Usp4; Unp mmu-miR-125b 240 278 AGUGUUCAAUCC---------------CAGAGUCCCU- | ::||| || |||||| ||| GCUGGGGUUUGGUGCACAGUGGCAUGUGUCUCAUGGAU Usp4; Unp mmu-miR-138 25 40 CUAAGUGUUGUGGUCGA || |||||||||| --CUCCCAACACCAGCA Usp4; Unp mmu-miR-140* 204 228 AGGCACCAAGAUG-----GGACACCAU ||||| ||||||| --GGUGGUGAGAGAAAAACCUGUGGA- Usp4; Unp mmu-miR-142-3p 278 307 -GGUAUUUCAUC-CU----UUGUGAUGU- ||| |:|||:| || :|| ||:|| UCCAAAGAGUGGAGAGGAAGACCCUGCAA Usp4; Unp mmu-miR-146 493 520 -UUGGGUACCU-UAAGU---CAAGAGU |||||:| |||| |||||| AAACCCGUUUCUAUUCUCUUGUUCUCU Usp4; Unp mmu-miR-146b 565 590 -UCGGAUACCUUAAGUC-AAGAGU- :| |||| | ||||| |||||| UGGGCUAUUGUUUUCAGUUUCUCAC Usp4; Unp mmu-miR-152 594 624 -GGGU--UCAAGACAGUACG-----UGACU ||:| ||||||||: ||: |||| UCCUAGAAGUUCUGUUUUGUCCCCCACUGC Usp4; Unp mmu-miR-17-3p 368 384 AUGUUCACGGGAGUGACGUCA :|||||| |||||| ---UGGUGCCCACACUGCU-- Usp4; Unp mmu-miR-183 237 267 GUCA---CUUAAG--AUG-GUCACGGUAU- :| | ||: |:| ||||| |||: UGGGCUGGGGUUUGGUGCACAGUGGCAUGU Usp4; Unp mmu-miR-191 340 371 -UCGACGA----------AAACCCUAAGGCAAC :|||||| ||| ||||||:| GGGCUGCUCCGAACUGGGUUUUGGAUUCUGG-- Usp4; Unp mmu-miR-193 220 246 -GAC-CCU-GA---AACAUCCGGUCAA ||| ||| || ||||:|||::| CCUGUGGAGCUCAAUUGUGGGCUGGG- Usp4; Unp mmu-miR-199a 199 247 CUUGUCCAUCAGACU--------------UG--------- UGACCC |||:|||:|| || :| :||||| AAACGGGUGGUGAGAGAAAAACCUGUGGAGCUCAAUUGUGGGCUGGGG Usp4; Unp mmu-miR-199b 199 247 CUUGUCCAUCA-----------GA---UUUG--------- UGACCC |||:|||:|| || :|:| :||||| AAACGGGUGGUGAGAGAAAAACCUGUGGAGCUCAAUUGUGGGCUGGGG Usp4; Unp mmu-miR-19b 229 259 -AGU---CAAAACGUACCUAA----ACGUGU- ||| || || |||: |||||| CUCAAUUGUGG-GC-UGGGGUUUGGUGCACAG Usp4; Unp mmu-miR-210 238 260 AGUCGGCGACAGUGUGCGUGUC- :||:| ||: ::|||||| -GGGCUGGGGUUUGGUGCACAGU Usp4; Unp mmu-miR-214 4 22 GACGGACAGACAC--GGACGACA ||| |||||| ||||| -GGCC--UCUGUGACCCUGCC-- Usp4; Unp mmu-miR-216a 230 250 GUGUCAACGGUCGACUCUAAU || |||: :||||:|:|| -UCAAUUGUGGGCUGGGGUUU Usp4; Unp mmu-miR-222 295 346 CUCUGGG------------UCA--UCGGU-CU---------ACA UCGA |||||| :|| ||||| || || :||| AAGACCCUGCAAUGAGCAUGGUGCAGCCAUGAAGACCCACCUGCAGGGCUG Usp4; Unp mmu-miR-23a 292 318 -CCUUUAGGGACCGUUAC----ACUA- ||||: |||| |||||| ||:| AGGAAGACCCU-GCAAUGAGCAUGGUG Usp4; Unp mmu-miR-24* 239 266 -UGACUAU-AGUCGA--GUCAUCCGUG- :|||: |::|: |||| ||||: GGCUGGGGUUUGGUGCACAGU-GGCAUG Usp4; Unp mmu-miR-27b 2 16 CGUCUUGAAUCGGUGACACUU |:||| |||||| -------GUGGCCUCUGUGAC Usp4; Unp mmu-miR-28 228 251 -GAGU---UAUCUGACACUCGAGGAA |||| :|:|:||| |:|:|: GCUCAAUUGUGGGCUG-GGGUUUG-- Usp4; Unp mmu-miR-293 30 70 -UGUGA-UGU-------------UUG--AGACGCCGUGA- |||| :|| :| ||||:|||||| AACACCAGCAUCCUCCCCCAGGAGAAUAUCUGUGGCACUC Usp4; Unp mmu-miR-29a 350 375 -UUGG-CUAAAGUCU---ACCACGAU |||: |:|||::|| |||||| GAACUGGGUUUUGGAUUCUGGUGCC- Usp4; Unp mmu-miR-29b 351 375 UUGUGA-CUAAAGUUU---ACCACGAU ||| |:|||:::| |||||| --AACUGGGUUUUGGAUUCUGGUGCC- Usp4; Unp mmu-miR-300 287 307 CUUCUCUCGAAC-GGGAACGUAU :||||| | |||| ||| -UGGAGAGGAAGACCCU-GCAA- Usp4; Unp mmu-miR-301 50 70 CGAAACUGUUAU-GAUAACGUGAC || |||| ||:| ||||| ----GGAGAAUAUCUGUGGCACUC Usp4; Unp mmu-miR-302c* 157 178 GUCGUCCAUUGGGGUACAAUUU- || ||| :|:|:|||||||: GAGAAGG--GCUCUAUGUUAAGA Usp4; Unp mmu-miR-31 380 403 GUCGAUAC-GGUCGU-AGAACGGA ||| ||||:| ||| ||| -UGCUCACCCCAGUAGUCUGGCCA Usp4; Unp mmu-miR-323 289 313 -UCUCCAGCUGGCACAUUACACG- ||||| |||| || |||| || GAGAGGAAGACCCUGCAAUGAGCA Usp4; Unp mmu-miR-337 159 186 -UUUCCGUAGUAUA--UCCUCGACUU- ||:||| :||:| || :||||:| GAAGGGCUCUAUGUUAAGAGGCUGGAU Usp4; Unp mmu-miR-338 418 437 AGUUGUUUUAGUGACUACGACCU ||:|||| :|||||:|| CCAGCAAAU---UUGAUGUUGU- Usp4; Unp mmu-miR-339 225 248 ACUCGAGGAC-CUCCUGUCCCU- |||||| | ||:| |||: GGAGCUCAAUUGUGGGCUGGGGU Usp4; Unp mmu-miR-340 449 469 CCGAUAUUUCAUUGACUCUGCCU- |||:| |:|||||:||: UGCUGUUC----AUUGAGAUGGGC Usp4; Unp mmu-miR-342 200 230 CUGCCCAC-GCUAAA------GACACACUCU ||||||| :|| ||||| ||| AACGGGUGGUGAGAGAAAAACCUGUG-GAGC Usp4; Unp mmu-miR-363 286 309 AAUGUCUACCUA-UGGCACGUUA- |: ||| ||| ||| |||||| GUGGAGA-GGAAGACCCUGCAAUG Usp4; Unp mmu-miR-370 32 55 UUGGUCCAAGGU-GGGGUCGUCCG ||||| ||| |||||| || CACCAGCAUCCUCCCCCAGGAGA- Usp4; Unp mmu-miR-380-5p 301 325 CGCG-UACAAGAUACCA-GUUGGU- :|| ||| | ||||| ||:||| CUGCAAUGAGC-AUGGUGCAGCCAU Usp4; Unp mmu-miR-411 239 262 -UGACUCCCAAUCACCUGGCACAA :|||:|| ||:||| || ||| GGCUGGGGUUUGGUGCACAGUGG- Usp4; Unp mmu-miR-434-5p 206 232 -CCAAG-----UUUGGUACUCAGCUCGA- ||| ||||| || ||||| UGGUGAGAGAAAAACCU---GUGGAGCUC Usp4; Unp mmu-miR-455-3p 256 307 -UCACA-UAUACGGG---------------CACCU----------GACGUA |||| ||:||:|: ||||| ||||| CAGUGGCAUGUGUCUCAUGGAUUCCAAAGAGUGGAGAGGAAGACCCUGCAA Usp4; Unp mmu-miR-455-5p 244 269 GCUACAUCAGGUUU--CCGUGUAU- |:| |:|| || ||||::|: GGGUUUGGUGCACAGUGGCAUGUGU Usp4; Unp mmu-miR-469 104 144 -CCUGUGG------------UUCUAGUUA---CUUUCUCCGU |||||:: :||| |: ||||||| AGGACAUUACCUCCUUUUAUGAGAAGAGGAAGGAAAGAGA-- Usp4; Unp mmu-miR-485-5p 393 420 CUUAAGUAGUGCCGG-----------UCGGAGA :|| :|||| |||||| -----AGUC-UGGCCACAGUAAACCAAGCCUCC Usp4; Unp mmu-miR-497 328 349 AUGUUUGG-UGUCACACGACGAC || ||| :||| |||||| GACCCACCUGCAGG--GCUGCUC Usp4; Unp mmu-miR-500 296 321 GACUUGGGAACGG-----GU-CCACGUA :|||| ||| || |||||| --AGACCC-UGCAAUGAGCAUGGUGCAG Usp4; Unp mmu-miR-503 600 625 CGUCAUGACA----AGGGC--GACGAU ||| |||| |||| |||| -AAGUUCUGUUUUGUCCCCCACUGCC- Usp4; Unp mmu-miR-546 12 26 -CUGAGGCACGGUGGUA ||| || ||||||| UGAC-CC-UGCCACCC- Usp4; Unp mmu-miR-667 236 271 GAACCCGACCC-------------ACCGUCCACAGU ||||||||| ||||| ||||| -GUGGGCUGGGGUUUGGUGCACAGUGGCAUGUGUCU Usp4; Unp mmu-miR-668 235 265 CCAUCACCCGGCUCGGC--------UCACUGU- ||||||:|:| : ||||:|| ---UGUGGGCUGGGGUUUGGUGCACAGUGGCAU Usp4; Unp mmu-miR-671 315 351 GGAGGUCGG-----------GGAGGUCCCGA--AGGA | ||||| ||| ||||||| ||| -GUGCAGCCAUGAAGACCCACCUGCAGGGCUGCUCCG Usp4; Unp mmu-miR-672 398 420 GUGUGUGUCAUGUGGU-UGGAGU :| ||||||| |||| :|||| GGC-CACAGUAAACCAAGCCUCC Usp4; Unp mmu-miR-678 436 466 -GGAGGUC-AGGAACGUGG-----CUCUG- ||||:|| ||:|||| : ||||: UCCUCUAGUUCUUUGCUGUUCAUUGAGAUG Usp4; Unp mmu-miR-681 140 184 -UCGAC-GGACGG----------UCG----------CUCCGAC || |||||: :|| ||||||| GAGAAACCCUGCUUUCUGAGAAGGGCUCUAUGUUAAGAGGCUGG Usp4; Unp mmu-miR-682 326 348 GUCUGAAGU-GACA--CUGACGUC |||| || ||| |:|||| AAGACC-CACCUGCAGGGCUGCU- Usp4; Unp mmu-miR-684 283 301 AACUGAACUUC-CCUUUUGA || ||:|| ||||:|| -AGAG-UGGAGAGGAAGACC Usp4; Unp mmu-miR-693-3p 315 348 AAUGUCGGU--------GUAGAC-UUUCGACG- |:|||||| || ||| |::||||| GUGCAGCCAUGAAGACCCACCUGCAGGGCUGCU Usp4; Unp mmu-miR-693-5p 215 245 CUUUUGAAAGCCU-------ACA-CCGAC- ||||| :||| ||| ||||| AAAAACCUGUGGAGCUCAAUUGUGGGCUGG Usp4; Unp mmu-miR-702 237 265 -CUCG-CCCCAUUUCCCAC------CCGU- |:|| ||||| |||| |||| UGGGCUGGGGUUU--GGUGCACAGUGGCAU Usp4; Unp mmu-miR-704 240 272 -GAUCCU------CGUC---UCGUGUACAGA- ||:||: ||| :|||::||||| GCUGGGGUUUGGUGCACAGUGGCAUGUGUCUC Usp4; Unp mmu-miR-705 379 403 -ACGGGUGGGGUGG--AGGGUGG- |||:||||||| : ||: :|| CUGCUCACCCCAGUAGUCUGGCCA Usp4; Unp mmu-miR-709 330 351 AGGAGGACGGA--GACGGAGG- || ||||| ||| |||| CCCACCUGCAGGGCUG-CUCCG Usp4; Unp mmu-miR-713 233 257 CGACACACGG----AAGUCACGU- :|||| ||: ||::||||| AUUGUGGGCUGGGGUUUGGUGCAC Usp4; Unp mmu-miR-715 237 262 GUGCGCCCCCA---CACGUGCCUC- : || ||||| |||||| | | UGGGCUGGGGUUUGGUGCACAGUGG Usp4; Unp mmu-miR-717 156 180 UCUCUUCCAUAGAGACAGA-CUC- ||||||| ||| |||: ||| UGAGAAGGGCUCUAUGUUAAGAGG Usp4; Unp mmu-miR-721 42 70 AAGGGGGAAAA-UUAA------CGUGAC |||||| ||| ||||| CUCCCCCAGGAGAAUAUCUGUGGCACUC Usp4; Unp mmu-miR-744 1 22 CGACAAUCGG-GAU-C-GGGGCGU || |:||| ||: | |||:|| --UG-UGGCCUCUGUGACCCUGCC Usp4; Unp mmu-miR-762 601 628 -CGAGACAGGGCCGGGGU---CGGGG- |:|||||: | |||| ||||: AGUUCUGUUUUGUCCCCCACUGCCCUU Usp4; Unp mmu-miR-764-3p 391 421 UGUCAA--CGGUGAUAC------CGGAGGA :||| ||||| :| |||||| GUAGUCUGGCCACAGUAAACCAAGCCUCCA Usp4; Unp mmu-miR-764-5p 48 70 -UCCUCCUGU--ACACUCGUGG- ||||| |:| |||| ||||: CAGGAGAAUAUCUGUG-GCACUC Usp4; Unp mmu-miR-9 254 287 GUAUGUCG-------------AUCUAUUGGUUUCU- ||||: |:||| ||||||| --CACAGUGGCAUGUGUCUCAUGGAUU-CCAAAGAG Usp4; Unp mmu-miR-99b 169 209 -GCG---UUCCAGCC--------AAGA-----UGCCCAC- :|: :||| :|| |||| ||||||| AUGUUAAGAGGCUGGAUUAUUUUUUCUUUUAAACGGGUGG Usp4; Unp mmu-miR-129-3p 160 167 U-----------------------ACGAAAAACCCCAUUCCCGAA |||||| || ||||||| AGAAGAGGAAGGAAAGAGAAACCCUGCUUUCUGAG--AAGGGCUC Usp4; Unp mmu-miR-299 405 412 UA-------------------CAUAC-ACCC-UGCCAUUUGGU ||| ||| || |||||||| GUGCCCACACUGCUCACCCCAGUAGUCUGGCCACAGUAAACCAA Usp4; Unp mmu-miR-302c* 169 176 G-----------------------UCGUCCAUUGGGGUACAAUUU || ::|:|:|||||||: AGGAAAGAGAAACCCUGCUUUCUGAGAAG--GGCUCUAUGUUAAGA Usp4; Unp mmu-miR-376c 166 173 GC-----------------------ACUUUAAAGGAGAUACAA |||:| ||||||||| GGAAGGAAAGAGAAACCCUGCUUUCUGAGAAGGGCUCUAUGUUA Usp4; Unp mmu-miR-469 174 181 CC---------UGU--GGUUCU-----AGUUACU-UUCUCCGU :| | ||| || ||| ||||||| AGAGAAACCCUGCUUUCUGAGAAGGGCUCUAUGUUAAGAGGCU Usp4; Unp mmu-miR-699 618 625 GCU---------------------CGGUCCAGC--GUGACGGA |:: ||| ||||||| UUCUCACAGACUCCUAGAAGUUCUGUUUUGUCCCCCACUGCCC Usp4; Unp mmu-let-7c 95 117 UUGGUAUGUU--GGAUGAUGGAGu ||||| |::| | |:|||||| AACCAGATGAGGAC-ATTACCTCc Usp4; Unp mmu-let-7d 6 24 uGAUACGUUGGAUGAUGGAGa || ||::||| ||:|| | cCTCTGTGACC--CTGCCACc Usp4; Unp mmu-miR-101a 576 609 gAAGUC-AAUAGUG-----------UCAUGACAu ||||| || |||| ||| |||| tTTCAGTTTCTCACAGACTCCTAGAAGTTCTGTt Usp4; Unp mmu-miR-101b 576 609 gAAGUC-GAUAGUG-----------UCAUGACAu ||||| :| |||| ||| |||| tTTCAGTTTCTCACAGACTCCTAGAAGTTCTGTt Usp4; Unp mmu-miR-107 324 347 ACUAUCGGG-ACAUGUUACGACGA ||| : ||| |:||: |||||| TGAAGACCCACCTGCAGGGCTGCT Usp4; Unp mmu-miR-107 292 319 aCUAUC-GGGACAU-----GUUACGACGa |: || ||||| | | ||| ||| aGGAAGACCCTGCAATGAGC-ATGGTGCa Usp4; Unp mmu-miR-10a 322 344 GUGUUUAAGCCUAGAUGUCCCau ||::|| | | ||:||||| CATGAAGACCCACCTGCAGGGct Usp4; Unp mmu-miR-125a 254 276 GUGUCCAAUUUCCCAGAGUCCCU ||||| | | |||||| ||| CACAGTGGCATGTGTCTCATGGA Usp4; Unp mmu-miR-125b 253 276 aGUGUU-CAAU-CCCAGAGUCCCU ||||: | | | |||||| ||| gCACAGTGGCATGTGTCTCATGGA Usp4; Unp mmu-miR-129-3p 148 167 uACGAAAAACCCCAUUCCCGAa |||||| || | ||||||| cTGCTTTCTGAG--AAGGGCTc Usp4; Unp mmu-miR-138 23 39 cuaAGUGUUGUGGUCGa || |||||||||| cccTCCCAACACCAGCa Usp4; Unp mmu-miR-140* 202 228 aggCACCA-----AGAUGGGACACCau ||||| | ||||||| cggGTGGTGAGAGAAAAACCTGTGGag Usp4; Unp mmu-miR-142-3p 279 305 GGUAUUUCA----UCCUU-UGUGAUGU ||| |:||| ||||| || ||:|| CCAAAGAGTGGAGAGGAAGACCCTGCA Usp4; Unp mmu-miR-146 494 519 UUGGGU-ACCUUAAG---UCAAGAGu |||||: | |||| |||||| AACCCGTTTCTATTCTCTTGTTCTCt Usp4; Unp mmu-miR-146b 566 588 uCGGAUACCUUAAGUC-AAGAGU | |||| | ||||| |||||| gGGCTATTGTTTTCAGTTTCTCA Usp4; Unp mmu-miR-152 595 623 GGG--UUCAAGACAGUAC-----GUGACu ||: |||||||||: || ||||| CCTAGAAGTTCTGTTTTGTCCCCCACTGc Usp4; Unp mmu-miR-155 298 316 gGGGAUAGUGUUAAUCGUAauu |||| :|||| ||||| aCCCT---GCAATGAGCATggt Usp4; Unp mmu-miR-17-3p 365 385 AUGUUCACGGGAGUGACGuca | | :|||||| |||||| TTCTGGTGCCCACACTGCtca Usp4; Unp mmu-miR-183 241 265 GUCACUUAA-GAUG-GUCACGGUAu | | |: || |:| ||||| ||| CTGGGGTTTGGTGCACAGTGGCATg Usp4; Unp mmu-miR-191 351 372 UCGACGAAAACCCUAAGGCAAC | ||| ||| ||||||:| || AACTGGGTTTTGGATTCTGGTG Usp4; Unp mmu-miR-193 221 246 GAC-CCU-GA---AACAUCCGGUCaa ||| ||| || ||||:|||::| CTGTGGAGCTCAATTGTGGGCTGGgg Usp4; Unp mmu-miR-199a 238 262 CUUGUCCAUCAGACU---UGUGACCc |::| || :||:||: ||| ||| GGGCTGG-GGTTTGGTGCACAGTGGc Usp4; Unp mmu-miR-199b 238 262 CUUGUCCAUCAGAUU---UGUGACCc |::| || :||:|:: ||| ||| GGGCTGG-GGTTTGGTGCACAGTGGc Usp4; Unp mmu-miR-19b 230 257 AGUCAAAACGU-ACCU--AA--ACGUGU ||| || || : |||: || |||||| TCAATTGTGGGCTGGGGTTTGGTGCACA Usp4; Unp mmu-miR-210 237 258 AGUCGGCGACAGUGUGCGUGUC | :||:| ||: ::|||||| TGGGCTGGGGTTTGGTGCACAG Usp4; Unp mmu-miR-214 3 23 gaCGGACAGACAC--GGACGaca ||| |||||| ||||| tgGCC--TCTGTGACCCTGCcac Usp4; Unp mmu-miR-216a 229 249 GUGUCAACGGUCGACUCUAAu | || |||: :||||:|:|| CTCAATTGTGGGCTGGGGTTt Usp4; Unp mmu-miR-23a 293 312 CCUUUAGGGACCGUUACACua ||||: |||| |||||| | GGAAGACCCT-GCAATGAGca Usp4; Unp mmu-miR-24* 220 243 uGACUAUAGUCGAGU---CAUCCGug ||| |: |||||| ||:||| cCTG-TG-GAGCTCAATTGTGGGCtg Usp4; Unp mmu-miR-27b 1 15 cgucuugaAUCGGUGACACUu |:||| |||||| ------tgTGGCCTCTGTGAc Usp4; Unp mmu-miR-28 212 234 gagUUAUCUGACA-CUCGAGgaa || | |||| |||||| gagAAAAACCTGTGGAGCTCaat Usp4; Unp mmu-miR-293 47 68 uGUGAUGUUUGAGACGCCGUGA || | || ||||:|||||| cCAGGAGAATATCTGTGGCACT Usp4; Unp mmu-miR-299 389 412 uaCAU-ACACC-CUGCCAUUUGGU ||| | ||| || |||||||| caGTAGTCTGGCCACAGTAAACCA Usp4; Unp mmu-miR-29a 351 375 UUGG-CUAAAGUCU---ACCACGau |||: |:|||::|| |||||| AACTGGGTTTTGGATTCTGGTGCcc Usp4; Unp mmu-miR-29b 349 375 uugUGA-CUAAAGUUU---ACCACGau ||| |:|||:::| |||||| cgaACTGGGTTTTGGATTCTGGTGCcc Usp4; Unp mmu-miR-300 286 307 CUUCUCUCGAACGGGAACGUau | :||||| | || |||| GTGGAGAGGAAGACCCTGCAat Usp4; Unp mmu-miR-301 46 69 cgaaaCUGUUAU-GAUAACGUGAc || |||| ||:| ||||| cccagGAGAATATCTGTGGCACTc Usp4; Unp mmu-miR-302c* 157 176 gUCGUCCAUUGGGGUACAAUUu || ||| :|:|:||||||| gAGAAGG--GCTCTATGTTAAg Usp4; Unp mmu-miR-31 379 402 GUCGA-UACGGUCGU-AGAACGGa | ||| | ||||:| ||| ||| CTGCTCACCCCAGTAGTCTGGCCa Usp4; Unp mmu-miR-323 290 311 UCUCCAGCUGGCACAUUACACG ||||| |||| || |||| || AGAGGAAGACCCTGCAATGAGC Usp4; Unp mmu-miR-337 160 184 UUUCCGUAGUAU-AUCCU-CGACUU ||:||| :||: || || ||||:| AAGGGCTCTATGTTAAGAGGCTGGA Usp4; Unp mmu-miR-338 418 437 aGUUGUUUUAGUGACUACGACcu ||:|||| | |||||:|| cCAGCAAATT---TGATGTTGtc Usp4; Unp mmu-miR-370 32 55 uUGGUCCAAGG-UGGGGUCGUCcg ||||| ||| |||||| || cACCAGCATCCTCCCCCAGGAGaa Usp4; Unp mmu-miR-375 331 356 aGUG--CG-CUCGGC-UUGCUUGuuu ||| || |:||:| ||||| cCACCTGCAGGGCTGCTCCGAACtgg Usp4; Unp mmu-miR-376c 154 173 gcACUUUAAAGGAGAUACAA |||:| ||||||||| tcTGAGAAGGGCTCTATGTT Usp4; Unp mmu-miR-411 240 262 uGACUCCCAAUCACCUGGCACaa |||:|| ||:||| || ||| gCTGGGGTTTGGTGCACAGTGgc Usp4; Unp mmu-miR-434-5p 212 230 ccaagUUUGGUACUCAGCUCGA ||||| | || ||||| gagaaAAACC-T--GTGGAGCT Usp4; Unp mmu-miR-455-3p 257 282 UCA-CAUAUAC-GGGCACCUGACGUa ||| | ||:|| |:| ||||:| || AGTGGCATGTGTCTCATGGATTCCAa Usp4; Unp mmu-miR-469 153 181 ccuguggUUCU--AGUUAC-UUUCUCCGu |||: || ||| ||||||| ttctgagAAGGGCTCTATGTTAAGAGGCt Usp4; Unp mmu-miR-469 105 134 CCUG---UGGUUCUAGUUACU-UUCUCCgu |||| ||| |: |||| |||||| GGACATTACCTCCTTTTATGAGAAGAGGaa Usp4; Unp mmu-miR-485-5p 391 419 CUUAAG--UAGUGCC----GG-UCGGAGa | | || : ||| | || |||||| GTAGTCTGGCCACAGTAAACCAAGCCTCc Usp4; Unp mmu-miR-500 294 320 gacuUGGGA----ACGGGU-CCACGUa ||||| || || |||||| gaagACCCTGCAATGAGCATGGTGCAg Usp4; Unp mmu-miR-503 599 625 CGUCAUGACAA------GGGCGACGau | ||| ||||| ||| |||| GAAGTTCTGTTTTGTCCCCCACTGCcc Usp4; Unp mmu-miR-546 13 26 CUGAGGCACGGUGGua ||| || ||||||| GAC-CC-TGCCACCct Usp4; Unp mmu-miR-667 247 270 gAACC-CGACCCACCGUCCACAGu |||| || |||||| ||||| tTTGGTGCACAGTGGCATGTGTCt Usp4; Unp mmu-miR-668 232 263 ccAUCACCCGGCU--------CGGCUCACUGU | ||||||:|: || ||||:|| aaTTGTGGGCTGGGGTTTGGTGCACAGTGGCA Usp4; Unp mmu-miR-671 321 350 GG-AGGUC--GG-GGAGGUCCCGA--AGGa || | || || ||| ||||||| ||| CCATGAAGACCCACCTGCAGGGCTGCTCCg Usp4; Unp mmu-miR-672 397 419 guguGUGUCAUGUGGUU-GGAGu ||||||| ||||| |||| tggcCACAGTAAACCAAGCCTCc Usp4; Unp mmu-miR-678 437 464 GGAGGUCAGGA----AC--GUGGCUCUg ||||:|||:|| || ||::|||| CCTCTAGTTCTTTGCTGTTCATTGAGAt Usp4; Unp mmu-miR-681 163 182 uCGACGGACGGUCGCUCCGAC ||| : ||::| ||||||| gGCTCTATGTTA-AGAGGCTG Usp4; Unp mmu-miR-682 326 348 gUCUGAAGU-GAC--ACUGACGuc |||| || ||| |:|||| aAGAC-CCACCTGCAGGGCTGCtc Usp4; Unp mmu-miR-684 282 300 aaCUGAACUUCCCUUUUGa || | ||: ||||:|| aaGAGTGGAGAGGAAGACc Usp4; Unp mmu-miR-699 606 625 gcucgguccaGCGUGACGGa | ||||||| tgttttgtccCCCACTGCCc Usp4; Unp mmu-miR-702 221 242 cuCGCC-CCAUUUCCCACCCGu |:|| | | || |||||| ctGTGGAGCTCAATTGTGGGCt Usp4; Unp mmu-miR-704 247 270 gAUCCUCGUCU---CGUGUACAGA | || ||| | |||::||||| tTTGGTGCACAGTGGCATGTGTCT Usp4; Unp mmu-miR-705 371 389 ACGGGUGGGGUGGAGGGUGG ||||||| |:: ||| | || TGCCCACACTG-CTCACCCC Usp4; Unp mmu-miR-705 397 423 ACGGGUG------GGGU-GGAGGGUGg || |||| || | ||||| :| TGGCCACAGTAAACCAAGCCTCCAGCa Usp4; Unp mmu-miR-717 139 159 UCUCUUCCAUAGA-GACAGACUC |||||| || || |||||| AGAGAA--ACCCTGCTTTCTGAG Usp4; Unp mmu-miR-762 602 626 CGAGACAGGGC-CGGGGU--CGGGg |:|||||:::| ||||| |||| GTTCTGTTTTGTCCCCCACTGCCCt Usp4; Unp mmu-miR-764-3p 402 420 UGUCAACGGUGAUACCGGAGGa ||||| | | | |||||| ACAGTAAAC-CAA--GCCTCCa Usp4; Unp mmu-miR-764-5p 49 68 UCCUCCUGUACAC-UCGUGg ||||| |:|| || :|||| AGGAGAATATCTGTGGCACt Usp4; Unp mmu-miR-9 262 285 GUAUGUCG---AUCUAUUGGUUUCU |||::: | |:||| ||||||| CATGTGTCTCATGGAT-TCCAAAGA Usp4; Unp mmu-miR-92 237 258 guCCGGCCCU-GUUCACGUuau |||:|||: : :||||| tgGGCTGGGGTTTGGTGCAcag Usp4; Unp mmu-miR-99b 186 207 gcguuccagccaagaUGCCCAC ||||||| tattttttcttttaaACGGGTG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp4 RAID00053402 mmu-miR-132-3p miRNA MIMAT0000144 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00073480 mmu-miR-18a-5p miRNA MIMAT0000528 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00100799 mmu-miR-1192 miRNA MIMAT0005850 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00148202 mmu-miR-7018-5p miRNA MIMAT0027940 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00221660 mmu-miR-761 miRNA MIMAT0003893 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00226150 mmu-miR-448-3p miRNA MIMAT0001533 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00293933 mmu-miR-5616-5p miRNA MIMAT0022359 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00478006 mmu-miR-125a-3p miRNA MIMAT0004528 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00594346 mmu-miR-135b-5p miRNA MIMAT0000612 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00624817 mmu-miR-6951-3p miRNA MIMAT0027803 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00685146 mmu-miR-3087-5p miRNA MIMAT0014895 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00701701 mmu-miR-3062-3p miRNA MIMAT0014831 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00733425 mmu-miR-6972-5p miRNA MIMAT0027846 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00782140 mmu-miR-6971-3p miRNA MIMAT0027845 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00782400 mmu-miR-214-3p miRNA MIMAT0000661 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00796086 mmu-miR-494-3p miRNA MIMAT0003182 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00801780 mmu-miR-882 miRNA MIMAT0004847 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00834718 mmu-miR-138-5p miRNA MIMAT0000150 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00839100 mmu-miR-5622-5p miRNA MIMAT0022371 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00932094 mmu-miR-6481 miRNA MIMAT0027339 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00965548 mmu-miR-10b-5p miRNA MIMAT0000208 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID00989388 mmu-miR-146b-5p miRNA MIMAT0003475 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01057213 mmu-miR-133a-3p miRNA MIMAT0000145 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01070114 mmu-miR-30d-3p miRNA MIMAT0017011 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01104008 mmu-miR-193a-5p miRNA MIMAT0004544 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01121957 mmu-miR-504-3p miRNA MIMAT0017277 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01176243 mmu-miR-133b-3p miRNA MIMAT0000769 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01249341 mmu-miR-6943-5p miRNA MIMAT0027786 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01292852 mmu-miR-135a-5p miRNA MIMAT0000147 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01342971 mmu-miR-7024-5p miRNA MIMAT0027952 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01349718 mmu-miR-3059-5p miRNA MIMAT0014811 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01360551 mmu-miR-449b miRNA MIMAT0005447 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01362349 mmu-miR-876-3p miRNA MIMAT0004855 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01377397 mmu-miR-382-5p miRNA MIMAT0000747 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01391018 mmu-miR-338-3p miRNA MIMAT0000582 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01395405 mmu-miR-15b-5p miRNA MIMAT0000124 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01419339 mmu-miR-381-3p miRNA MIMAT0000746 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01421114 mmu-miR-30e-3p miRNA MIMAT0000249 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01423252 mmu-miR-7212-5p miRNA MIMAT0028392 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01465445 mmu-miR-29b-1-5p miRNA MIMAT0004523 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01478386 mmu-miR-320-3p miRNA MIMAT0000666 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01582817 mmu-miR-329-3p miRNA MIMAT0000567 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01649694 mmu-miR-7023-5p miRNA MIMAT0027950 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01761380 mmu-miR-7119-5p miRNA MIMAT0028135 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01825872 mmu-miR-6941-5p miRNA MIMAT0027782 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID01881483 mmu-miR-34c-5p miRNA MIMAT0000381 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02066887 mmu-miR-185-5p miRNA MIMAT0000214 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02074179 mmu-miR-34b-5p miRNA MIMAT0000382 Usp4 mRNA 22258 NGS (Next Generation Sequencing)//Prediction 0.6308 Usp4 RAID02105927 mmu-miR-34a-5p miRNA MIMAT0000542 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02178312 mmu-miR-376c-3p miRNA MIMAT0003183 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02256270 mmu-miR-7031-5p miRNA MIMAT0027966 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02310006 mmu-miR-152-3p miRNA MIMAT0000162 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02316595 mmu-miR-449a-5p miRNA MIMAT0001542 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02320744 mmu-miR-7117-5p miRNA MIMAT0028131 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02348586 mmu-miR-362-3p miRNA MIMAT0004684 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02371704 mmu-miR-7116-3p miRNA MIMAT0028130 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02565750 mmu-miR-322-5p miRNA MIMAT0000548 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02578226 mmu-miR-3475-3p miRNA MIMAT0015219 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02595911 mmu-miR-221-3p miRNA MIMAT0000669 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02610290 mmu-miR-495-3p miRNA MIMAT0003456 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02684992 mmu-miR-6914-5p miRNA MIMAT0027728 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID02982936 mmu-miR-146a-5p miRNA MIMAT0000158 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03010123 mmu-miR-7000-5p miRNA MIMAT0027902 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03019974 mmu-miR-222-3p miRNA MIMAT0000670 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03095174 mmu-miR-299a-5p miRNA MIMAT0000377 Usp4 mRNA 22258 Prediction 0.2202 Usp4 RAID03102002 mmu-miR-24-3p miRNA MIMAT0000219 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03146211 mmu-miR-342-3p miRNA MIMAT0000590 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03167622 mmu-miR-497a-5p miRNA MIMAT0003453 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03179597 mmu-miR-874-3p miRNA MIMAT0004853 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03186282 mmu-miR-186-5p miRNA MIMAT0000215 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03207003 mmu-miR-18b-5p miRNA MIMAT0004858 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03255058 mmu-miR-6947-3p miRNA MIMAT0027795 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03260478 mmu-miR-6904-5p miRNA MIMAT0027708 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03274076 mmu-miR-124-3p miRNA MIMAT0000134 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03326571 mmu-miR-1912-3p miRNA MIMAT0014958 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03331835 mmu-miR-7216-5p miRNA MIMAT0028400 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03542005 mmu-miR-6964-5p miRNA MIMAT0027828 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03546333 mmu-miR-449c-5p miRNA MIMAT0003460 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03565107 mmu-miR-6963-3p miRNA MIMAT0027827 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03586831 mmu-miR-6938-3p miRNA MIMAT0027777 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03619118 mmu-miR-30a-3p miRNA MIMAT0000129 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03677018 mmu-miR-7646-5p miRNA MIMAT0029794 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03682376 mmu-miR-140-3p miRNA MIMAT0000152 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03755013 mmu-miR-216a-5p miRNA MIMAT0000662 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03762771 mmu-miR-485-5p miRNA MIMAT0003128 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03780370 mmu-miR-451a miRNA MIMAT0001632 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03813445 mmu-miR-10a-5p miRNA MIMAT0000648 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03896256 mmu-miR-543-3p miRNA MIMAT0003168 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03928493 mmu-miR-140-5p miRNA MIMAT0000151 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID03929353 mmu-miR-183-5p miRNA MIMAT0000212 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID04000121 mmu-miR-6990-3p miRNA MIMAT0027883 Usp4 mRNA 22258 Prediction 0.1828 Usp4 RAID04176530 G730013B05Rik lncRNA 619312 Usp4 protein 22258 Microarray//RNA-seq 0.6606