DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 113894 Sqstm1 agaGACGUCCGG-GACACGA-AACg ||||| || || |||| ||| augCUGCACUCCACU-UGCUCUUGc 2 21 264 287 [rn4:10:35751650-35751673:-] 0.5118 125 0 -20.25 -0.1093 MIMAT0000577 rno-miR-337 113894 Sqstm1 uuUC-CGUAGUAUAUCCUC-GACUu || |||| | | : ||| |||| aaAGUGCAUGAGAAGAGAGUCUGAg 2 22 142 166 [rn4:10:35751771-35751795:-] 0.5152 124 0 -18.43 -0.3036 MIMAT0004645 rno-miR-148b-5p 113894 Sqstm1 ggACUCACAUAUUGUCUUGAAg ||:||| ||:: ||||||| ccUGGGUG-AUGG-AGAACUUa 2 21 458 477 [rn4:10:35751460-35751479:-] 0.5083 160 7 -23.25 -0.2455 MIMAT0000599 rno-miR-349 113894 Sqstm1 ucUCCAAUUCUGUCGUCCCGAc | || :|| :||||||||| ucAUGUAGAG-UAGCAGGGCUu 2 21 51 71 [rn4:10:35751866-35751886:-] 0.5152 162 7 -20.91 -0.1831 MIMAT0004720 rno-miR-30e* 113894 Sqstm1 cgaCAUUUGUAGGCUGACUUUc ||:| | || ||||||| uagGUGA--AGCCAACUGAAAg 2 20 476 495 [rn4:10:35751442-35751461:-] 0.5083 152 7 -18.37 -0.3915 MIMAT0004722 rno-miR-30d* 113894 Sqstm1 cgUCGUUUGUAGACUGACUUUc || :| | | ||||||| uuAGGUGA-AGCCAACUGAAAg 2 21 475 495 [rn4:10:35751442-35751462:-] 0.5083 142 7 -14.19 -0.3915 MIMAT0000809 rno-miR-30a* 113894 Sqstm1 cgacguuugUAGGCUGACUUUc | || ||||||| cuuaggugaAGCCAACUGAAAg 2 14 474 495 [rn4:10:35751442-35751463:-] 0.5083 149 7 -16.55 -0.3915 MIMAT0004731 rno-miR-125b* 113894 Sqstm1 uccaggguucucGGACUGAACa :|||||||| uauguagcuuccUCUGACUUGa 2 11 576 597 [rn4:10:35751340-35751361:-] 0.5083 146 7 -17.16 -0.8582 MIMAT0003124 rno-miR-412 113894 Sqstm1 ugcCGAUCACCUG-GUCCACUUCa | |:| | || :|||||||| gguGAUGGAGAACUUAGGUGAAGc 2 21 462 485 [rn4:10:35751452-35751475:-] 0.5083 159 7 -21.15 -0.2981 MIMAT0003191 rno-miR-493 113894 Sqstm1 gaCCGUGUG-UCAUC-UGGAAGu ||||: | ||| |||||| uuGGCAUUCUUCUAGAACCUUCa 2 20 87 109 [rn4:10:35751828-35751850:-] 0.5152 122 6 -21.75 -0.2765 MIMAT0005282 rno-miR-872 113894 Sqstm1 ggACUUGAUUGUUCAUUGGAa | :|:| :||||||||| acUUGAUUUUUAAGUAACCUg 2 20 592 612 [rn4:10:35751325-35751345:-] 0.5083 159 7 -20.48 -1.0833 MIMAT0005301 rno-miR-188 113894 Sqstm1 ggGAGGUGGUACGUUCCCUAc ||::|::| ||||||| uuCUUUAUUA--AAAGGGAUu 2 20 340 358 [rn4:10:35751579-35751597:-] 0.5083 148 7 -17.42 -1.0549 MIMAT0005329 rno-miR-674-5p 113894 Sqstm1 auguggUGAGGGUAGAGUCACg ||| :| ||||||| agggggACUGUC--CUCAGUGa 2 17 405 424 [rn4:10:35751513-35751532:-] 0.5083 145 7 -16.19 -0.2836 MIMAT0005332 rno-miR-708* 113894 Sqstm1 gaucuucGAGUGUCAGAUCAAc ||::: ||||||| caccuccCUUGUCUUCUAGUUg 2 16 27 48 [rn4:10:35751889-35751910:-] 0.4898 147 7 -12.48 -0.2572 MIMAT0012827 rno-miR-1224 113894 Sqstm1 gagguggagggGUCAGGAGUg | ||||||| uuagagggggaCUGUCCUCAg 2 11 401 421 [rn4:10:35751516-35751536:-] 0.5083 142 7 -12.65 -0.2009 MIMAT0012827 rno-miR-1224 113894 Sqstm1 gagGUGGAGGGGUCAGG-AGUg ||||| |||||| ||| uugCACCU--GCAGUCCAUCAu 2 19 296 315 [rn4:10:35751622-35751641:-] 0.5083 123 0 -22.41 -0.1489 MIMAT0012838 rno-miR-653 113894 Sqstm1 gucauCUCUUA--CAAAGUUGUg || |:| |||||||| caacuGAUAGUUAUUUUCAACAa 2 17 363 385 [rn4:10:35751552-35751574:-] 0.5083 147 7 -10.13 -1.2527 MIMAT0012853 rno-miR-761 113894 Sqstm1 acACAGUCA--AAGU-GGGAC-GACg || |||| ||| ||||| ||| ccUG-CAGUCCAUCAUCCCUGCCUGa 2 21 301 325 [rn4:10:35751612-35751636:-] 0.5083 120 0 -20.94 -0.7261 MIMAT0012854 rno-miR-764 113894 Sqstm1 uccucCUGUACACUCGUGg ||| ||||||| augcuGACCCCUGAGCACa 2 15 174 192 [rn4:10:35751745-35751763:-] 0.5152 146 7 -13.92 -0.1090 MIMAT0000575 rno-miR-335 113894 Sqstm1 uguaaaaagcaauAACGAGAACu ||||||||| ugcugcacuccacUUGCUCUUGc 2 11 265 287 [rn4:10:35751650-35751672:-] 0.5118 150 7 -12.54 -0.1626 MIMAT0000579 rno-miR-148b-3p 113894 Sqstm1 ugUUUCAAGACAC-UACGUG-ACu |:|| |||| | :||||| || agAGAG-UCUGAGUGUGCACAUGc 2 21 155 177 [rn4:10:35751760-35751782:-] 0.5152 125 0 -16.89 -0.2195 MIMAT0000602 rno-miR-20a 113894 Sqstm1 gauggaCGUGAUAUUCGUGAAAu |:: ||| ||||||| aauaaaGUGGCAUAUGCACUUU- 2 18 614 635 [rn4:10:35751302-35751323:-] 0.5083 153 7 -10.40 -1.0141 MIMAT0000611 rno-miR-135b 113894 Sqstm1 aguguauccUUACUUUUCGGUAu ||| |||||||| uuuucaacaAAU--AAAGCCAUu 2 15 376 396 [rn4:10:35751541-35751561:-] 0.5083 147 7 -10.82 -1.0868 MIMAT0000786 rno-miR-17-5p 113894 Sqstm1 gauggacgugacAUUCGUGAAAc || ||||||| aauaaaguggcaUAUGCACUUU- 2 12 614 635 [rn4:10:35751302-35751323:-] 0.5083 147 7 -10.40 -1.0170 MIMAT0000810 rno-miR-31 113894 Sqstm1 gucGAUACGGUCGUAGAACGGa || |: || ||||||| gcaCUCCACUUGC-UCUUGCCg 2 20 269 289 [rn4:10:35751648-35751668:-] 0.5118 145 7 -15.18 -0.1093 MIMAT0000817 rno-miR-93 113894 Sqstm1 gauggacgugCUUGU-CGUGAAAc | |:| ||||||| uaauaaagugGCAUAUGCACUUU- 2 14 613 635 [rn4:10:35751302-35751324:-] 0.5083 144 7 -10.36 -1.0198 MIMAT0000818 rno-miR-96 113894 Sqstm1 ucguuuuuaCACGAUCA-CGGUUu ||||| || ||||| -------caGUGCU-GUGGCCAAg 2 15 1 16 [rn4:10:35751921-35751936:-] 0.4644 120 0 -18.53 -0.2385 MIMAT0000824 rno-miR-103 113894 Sqstm1 aguaUCGGGACAU-GUUACGACGa |||: || | : ||||||| agggAGCUGUGGAGUCAUGCUGCa 2 20 248 271 [rn4:10:35751666-35751689:-] 0.5118 154 7 -17.25 -0.1475 MIMAT0000825 rno-miR-106b 113894 Sqstm1 uagacgUGACAGU---CGUGAAAu | || || ||||||| uaauaaAGUGGCAUAUGCACUUU- 2 16 613 635 [rn4:10:35751302-35751324:-] 0.5083 142 7 -10.40 -1.0170 MIMAT0000826 rno-miR-107 113894 Sqstm1 acuaUCGGGACAU-GUUACGACGa |||: || | : ||||||| agggAGCUGUGGAGUCAUGCUGCa 2 20 248 271 [rn4:10:35751666-35751689:-] 0.5118 154 7 -18.99 -0.1475 MIMAT0000834 rno-miR-128 113894 Sqstm1 uuucucuggccAAGUGACACu ||||||||| agaucuuaucaUUCACUGUGc 2 11 494 514 [rn4:10:35751423-35751443:-] 0.5083 150 7 -16.20 -0.4970 MIMAT0000836 rno-miR-130a 113894 Sqstm1 uacgggaaaAUUGUA-ACGUGAc |::||| |||||| guaauaaagUGGCAUAUGCACUu 2 14 612 634 [rn4:10:35751303-35751325:-] 0.5083 121 6 -11.83 -0.9011 MIMAT0000841 rno-miR-135a 113894 Sqstm1 aguguauccuUAUUUUUCGGUAu | | |||||||| uauuuucaacAAAUAAAGCCAUu 2 14 374 396 [rn4:10:35751541-35751563:-] 0.5083 149 7 -9.84 -1.0868 MIMAT0000856 rno-miR-154 113894 Sqstm1 gcuuccguuguGCCUAUUGGAu | |||||||| aucaucccugcCUGAUAACCUu 2 12 311 332 [rn4:10:35751605-35751626:-] 0.5083 147 7 -10.61 -0.2216 MIMAT0000856 rno-miR-154 113894 Sqstm1 gcuuccguugugccUAUUGGAu :|||||| gacuugauuuuuaaGUAACCUg 2 9 591 612 [rn4:10:35751325-35751346:-] 0.5083 124 6 -9.37 -0.1605 MIMAT0000868 rno-miR-193 113894 Sqstm1 ugacccuGAAACAU-CCGGUCAa |||| | ||||||| gugccccCUUUUAAUGGCCAGUu 2 16 511 533 [rn4:10:35751404-35751426:-] 0.5083 150 7 -15.64 -1.0302 MIMAT0000868 rno-miR-193 113894 Sqstm1 ugacCCUGAAACAUCC-GGUCAa ||:||| ||| ||||| agcaGGGCUUCUAAGGCCCAGUg 2 19 62 84 [rn4:10:35751853-35751875:-] 0.5152 126 0 -19.36 -0.2748 MIMAT0000877 rno-miR-204 113894 Sqstm1 uccguauccUACUGUUUCCCUu || | ||||||| guuuucuuuAUUA-AAAGGGAu 2 14 337 357 [rn4:10:35751580-35751600:-] 0.5083 143 7 -9.15 -1.0645 MIMAT0000882 rno-miR-211 113894 Sqstm1 uccguuuccUACUGUUUCCCUu || | ||||||| guuuucuuuAUUA-AAAGGGAu 2 14 337 357 [rn4:10:35751580-35751600:-] 0.5083 143 7 -9.15 -1.0645 MIMAT0000890 rno-miR-221 113894 Sqstm1 cuuugggucgucuGUUACAUCGa | ||||||| aaguacaaaccccCUAUGUAGCu 2 11 562 584 [rn4:10:35751353-35751375:-] 0.5083 142 7 -16.56 -0.6082 MIMAT0000891 rno-miR-222 113894 Sqstm1 ugggucaucGGUCUACAUCGa || ||||||| guacaaaccCCCUAUGUAGCu 2 13 564 584 [rn4:10:35751353-35751373:-] 0.5083 144 7 -16.90 -0.6119 MIMAT0000896 rno-miR-292-5p 113894 Sqstm1 guUUUCUCGGGGGU-CAAA-CUCa | | |||| ::| |||| ||| aaAUAAAGCCAUUAUGUUUAGAGg 2 21 384 407 [rn4:10:35751530-35751553:-] 0.5083 123 0 -14.02 -0.2350 MIMAT0001534 rno-miR-448 113894 Sqstm1 uacccuguaggaUGUAUACGUu :|||||||| uguaauaaagugGCAUAUGCAc 2 11 611 632 [rn4:10:35751305-35751326:-] 0.5083 146 7 -11.04 -0.1812 MIMAT0003117 rno-miR-361 113894 Sqstm1 cauggggaccucuaaGACUAUu |||||| aagggauuaguacaaCUGAUAg 2 8 351 372 [rn4:10:35751565-35751586:-] 0.5083 120 6 -12.39 -0.1124 MIMAT0003211 rno-miR-20b-5p 113894 Sqstm1 uggaCGUGAUACUCGUGAAAc ||| ||| ||||||| agugGCA-UAU--GCACUUU- 2 18 619 635 [rn4:10:35751302-35751318:-] 0.5083 148 7 -10.40 -0.9916 MIMAT0003213 rno-miR-503 113894 Sqstm1 gaCGUCA-UGA--CAAGGGCGACGAu || || :|| | |:|||||||| caGCUGUGGCUGGGCUUCCGCUGCUu 2 22 201 226 [rn4:10:35751711-35751736:-] 0.5152 159 7 -28.42 -0.1042 MIMAT0003381 rno-miR-499 113894 Sqstm1 uuuguagUGACGUUC-AGAAUu |||| ||| ||||| gaagccaACUGAAAGAUCUUAu 2 15 481 502 [rn4:10:35751435-35751456:-] 0.5083 126 0 -13.09 -0.6801 MIMAT0005304 rno-miR-301b 113894 Sqstm1 cgaaacUGUUAUGGUA-ACGUGAc | |:|: ||| |||||| uguaauAAAGUGGCAUAUGCACUu 2 18 611 634 [rn4:10:35751303-35751326:-] 0.5083 125 6 -13.23 -0.8944

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G014201 Sqstm1 Rattus norvegicus 113894

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sqstm1 RAID00279632 rno-miR-93-5p miRNA MIMAT0000817 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID00382472 rno-miR-499-5p miRNA MIMAT0003381 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID00740030 rno-miR-349 miRNA MIMAT0000599 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID00886144 rno-miR-221-3p miRNA MIMAT0000890 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID00944587 rno-miR-107-3p miRNA MIMAT0000826 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01035968 rno-miR-301b-3p miRNA MIMAT0005304 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01216156 rno-miR-328a-5p miRNA MIMAT0017029 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01403534 rno-miR-448-3p miRNA MIMAT0001534 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01441925 rno-miR-204-5p miRNA MIMAT0000877 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01551021 rno-miR-135a-5p miRNA MIMAT0000841 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID01573136 rno-miR-193a-3p miRNA MIMAT0000868 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID01579115 rno-miR-211-5p miRNA MIMAT0000882 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01611361 rno-miR-374-3p miRNA MIMAT0017223 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID01790504 rno-miR-20b-5p miRNA MIMAT0003211 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID02201936 rno-miR-335 miRNA MIMAT0000575 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02304332 rno-miR-129-1-3p miRNA MIMAT0017120 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02320218 rno-miR-96-5p miRNA MIMAT0000818 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02382972 rno-miR-154-5p miRNA MIMAT0000856 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02519973 rno-miR-193b-3p miRNA MIMAT0035734 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02560023 rno-miR-770-3p miRNA MIMAT0017317 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02572133 rno-miR-503-5p miRNA MIMAT0003213 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02676729 rno-miR-3590-3p miRNA MIMAT0017890 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02689479 rno-miR-148b-3p miRNA MIMAT0000579 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID02851361 rno-miR-128-3p miRNA MIMAT0000834 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID03120372 rno-miR-20a-5p miRNA MIMAT0000602 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID03183552 rno-miR-17-5p miRNA MIMAT0000786 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID03362352 rno-miR-129-2-3p miRNA MIMAT0000601 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID03386295 rno-miR-31a-5p miRNA MIMAT0000810 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID03412148 rno-miR-135b-5p miRNA MIMAT0000611 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID03437287 rno-miR-106b-5p miRNA MIMAT0000825 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID03581797 rno-miR-378a-3p miRNA MIMAT0003379 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID03822054 rno-miR-361-5p miRNA MIMAT0003117 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID03837287 rno-miR-126b miRNA MIMAT0017843 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID03867287 rno-miR-130a-3p miRNA MIMAT0000836 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID03888487 rno-miR-222-3p miRNA MIMAT0000891 Sqstm1 mRNA 113894 Prediction 0.2202 Sqstm1 RAID04009396 rno-miR-103-3p miRNA MIMAT0000824 Sqstm1 mRNA 113894 Prediction 0.1828 Sqstm1 RAID04042871 rno-miR-292-5p miRNA MIMAT0000896 Sqstm1 mRNA 113894 Prediction 0.1828