DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 300849 Fbxo9 acaACGUCGCGA----AGUACAAa ||:|| |:| ||||||| uacUGUAGAGUUUAAAUCAUGUUu 2 18 250 273 [rn4:8:83056271-83056294:-] 0.5785 148 7 -14.00 -0.9979 MIMAT0004639 rno-miR-325-3p 300849 Fbxo9 aacUAUCCUCCACGAGUUAUUu :| | | ||:||||||| gucGUUGAAACUGUUCAAUAAa 2 20 423 444 [rn4:8:83056100-83056121:-] 0.5785 155 7 -11.56 -1.1142 MIMAT0004645 rno-miR-148b-5p 300849 Fbxo9 ggacucACAUAUUGUCUUGAAg || | : ::|||||| cauacaUGGA-GUUGGAACUUa 2 17 101 121 [rn4:8:83056423-83056443:-] 0.6022 126 6 -8.82 -0.1312 MIMAT0000607 rno-miR-7a* 300849 Fbxo9 uaccgucugacacuaAACAACa |||||| ggaacuuacuuuaugUUGUUGg 2 8 114 135 [rn4:8:83056409-83056430:-] 0.6022 120 6 -8.35 -0.1310 MIMAT0000813 rno-miR-34b 300849 Fbxo9 guUAGUCGAU-UA-A-UGUGACGGAu | ||| |: :| | :|||||||| ugAGCAGAUGUGUCUCGCACUGCCUu 2 22 287 312 [rn4:8:83056232-83056257:-] 0.5785 150 7 -18.47 -0.1227 MIMAT0004728 rno-miR-124* 300849 Fbxo9 uagUUCCAGGCGACACUUGUGc :| || :|:| |||||| uuaGAAGU-UGUUAAGAACACu 2 20 212 232 [rn4:8:83056312-83056332:-] 0.5785 121 6 -10.85 -0.1131 MIMAT0000847 rno-miR-142-5p 300849 Fbxo9 ucaucacgaaaGAUGAAAUAc :|||||||| ggaguuggaacUUACUUUAUg 2 11 108 128 [rn4:8:83056416-83056436:-] 0.6022 146 7 -13.37 -0.9631 MIMAT0000899 rno-miR-297 300849 Fbxo9 guACGUAUGUACGUGUGUAUGUa | |||:||| |:||||||| uaUACAUGCAUAGAUACAUACAu 2 22 85 107 [rn4:8:83056437-83056459:-] 0.6022 173 7 -24.14 -0.7734 MIMAT0003116 rno-miR-501 300849 Fbxo9 aaagugggucccugUUUCCUAa ||||||| auuuuuuuuauuuaAAAGGAUa 2 9 161 182 [rn4:8:83056362-83056383:-] 0.6022 140 7 -9.34 -1.2925 MIMAT0005279 rno-miR-466c 300849 Fbxo9 guACAUGUACGUGUGU-AGUGu || :||| | |||| |||| ccUGAGCAUCCUCACACUCACa 2 20 316 337 [rn4:8:83056207-83056228:-] 0.5785 131 0 -16.10 -0.7865 MIMAT0005283 rno-miR-872* 300849 Fbxo9 uccuccgaugacgUUAUCAAgu :|||||| uuuuauuuaaaagGAUAGUUga 3 10 166 187 [rn4:8:83056357-83056378:-] 0.6022 121 0 -6.21 -0.1526 MIMAT0005288 rno-miR-880 300849 Fbxo9 agAUGAGUCU---UACUUACCUCAu |:| :||| || ||||||| caUGCAUAGAUACAUACAUGGAGUu 2 21 89 113 [rn4:8:83056431-83056455:-] 0.6022 151 7 -13.97 -0.8797 MIMAT0005318 rno-miR-471 300849 Fbxo9 cacUUUUCGUG-AUAUG-AUGCAu | | |:|| ||||| ||||| guuAUAUGUACAUAUACAUACGUg 2 20 57 80 [rn4:8:83056464-83056487:-] 0.5791 130 0 -16.00 -0.9395 MIMAT0012828 rno-miR-362 300849 Fbxo9 uaaguguggauccaaggUUCCUAa |||||| uuauuuuuuuuauuuaaAAGGAUa 2 8 159 182 [rn4:8:83056362-83056385:-] 0.6022 120 6 -8.47 -0.2489 MIMAT0012831 rno-miR-544 300849 Fbxo9 cucgaaCGAUUUUUAC-GUCUUa || |:|:|| ||||| gcagaaGCAUAGAGUGCCAGAAu 2 17 28 50 [rn4:8:83056494-83056516:-] 0.5561 120 0 -13.11 -0.7127 MIMAT0012844 rno-miR-665 300849 Fbxo9 ucCCUGGAGUCGGAGGACCa |||: : | :|||||| aaGGAUAGUUGAUUCCUGGg 2 19 176 195 [rn4:8:83056349-83056368:-] 0.5903 134 6 -18.08 -0.1015 MIMAT0012846 rno-miR-201 300849 Fbxo9 uucUUGUUACGGAAUGAC-UCa ||:|| |||||||| || uguAAUAA-ACCUUACUGUAGa 2 19 238 258 [rn4:8:83056286-83056306:-] 0.5785 128 0 -14.64 -1.1700 MIMAT0012848 rno-miR-294 300849 Fbxo9 ucuAUCCCG-GAGGUAAAACUc |:|||: ||:::|||||| uccUGGGGUACUUUGUUUUGAa 2 19 189 210 [rn4:8:83056334-83056355:-] 0.5903 149 6 -16.94 -0.3067 MIMAT0000566 rno-miR-329 300849 Fbxo9 uuuuuccaaucgaccCACACAa |||||| uguacauauacauacGUGUGUa 2 8 63 84 [rn4:8:83056460-83056481:-] 0.5791 120 6 -6.98 -0.1902 MIMAT0000606 rno-miR-7a 300849 Fbxo9 uguuguUUUAGUGAU-CAGAAGGu |||| | |: |||||| gauuauAAAUAAAUGUUUCUUCCa 2 18 445 468 [rn4:8:83056076-83056099:-] 0.5785 124 6 -11.98 -0.1189 MIMAT0000780 rno-miR-7b 300849 Fbxo9 uguUGUUUUAGUGUUCAGAAGGu |:||| |:: |||||| auuAUAAAUAAAUGUUUCUUCCa 2 21 446 468 [rn4:8:83056076-83056098:-] 0.5785 124 6 -11.38 -0.1189 MIMAT0000798 rno-miR-27b 300849 Fbxo9 cgucuUGAAUCGGUGACACUu ||| | ||||||| accacACUCA--AACUGUGAa 2 17 392 410 [rn4:8:83056134-83056152:-] 0.5785 141 7 -12.29 -0.7919 MIMAT0000799 rno-miR-27a 300849 Fbxo9 cgccuUGAAUCGGUGACACUu ||| | ||||||| accacACUCA--AACUGUGAa 2 17 392 410 [rn4:8:83056134-83056152:-] 0.5785 141 7 -12.29 -0.7919 MIMAT0000814 rno-miR-34c 300849 Fbxo9 cgUUAGUC--GAUUGA-UGUGACGGa :| ||| |: || :||||||| cuGAGCAGAUGUGUCUCGCACUGCCu 2 22 286 311 [rn4:8:83056233-83056258:-] 0.5785 147 7 -21.45 -0.1497 MIMAT0000815 rno-miR-34a 300849 Fbxo9 ugUUGGUCGAUUC----UGUGACGGu :| ||| |: | :||||||| cuGAGCAGAUGUGUCUCGCACUGCCu 2 21 286 311 [rn4:8:83056233-83056258:-] 0.5785 143 7 -17.33 -0.1497 MIMAT0000838 rno-miR-132 300849 Fbxo9 gcuggUACCGACAUCUGACAAu :| |:|| | |||||| cuggaGUCGUUG-AAACUGUUc 2 18 418 438 [rn4:8:83056106-83056126:-] 0.5785 123 6 -10.80 -0.1530 MIMAT0000842 rno-miR-136 300849 Fbxo9 agGUA-GUAGUUUUG--UUUACCUCa ||| ||| :| || | |||||| uaCAUGCAUAGAUACAUACAUGGAGu 2 22 87 112 [rn4:8:83056432-83056457:-] 0.6022 131 6 -17.09 -0.1197 MIMAT0000845 rno-miR-139-5p 300849 Fbxo9 gaccUCUGUGCACGUGACAUCu | | || | :||||||| uguaAUAAACCU-UACUGUAGa 2 19 238 258 [rn4:8:83056286-83056306:-] 0.5785 148 7 -12.59 -1.2143 MIMAT0000850 rno-miR-144 300849 Fbxo9 ucAUGUAGUAGAUAUG-ACAu ||||| || |||| ||| ugUACAU-AUACAUACGUGUg 2 19 63 82 [rn4:8:83056462-83056481:-] 0.5791 124 0 -13.23 -1.0196 MIMAT0000883 rno-miR-212 300849 Fbxo9 accggCACUGACCUCUGACAAu || ::| || |||||| cuggaGUCGUU-GAAACUGUUc 2 18 418 438 [rn4:8:83056106-83056126:-] 0.5785 123 6 -13.07 -0.1530 MIMAT0001543 rno-miR-449a 300849 Fbxo9 ugGUCGAU-UGUUAUGUGACGGu ||| |: :: :||||||| agCAGAUGUGUCUCGCACUGCCu 2 21 289 311 [rn4:8:83056233-83056255:-] 0.5785 143 7 -16.78 -0.1497 MIMAT0003193 rno-miR-494 300849 Fbxo9 uccaaagggcacaUACAAAGu ||||||| agauuauaaauaaAUGUUUCu 2 9 444 464 [rn4:8:83056080-83056100:-] 0.5785 140 7 -6.71 -1.3017 MIMAT0003208 rno-miR-374 300849 Fbxo9 gugaaucguccaacaUAAUAUa |||||| aacuguucaauaaagAUUAUAa 2 8 431 452 [rn4:8:83056092-83056113:-] 0.5785 120 6 -4.66 -0.3351 MIMAT0005311 rno-miR-410 300849 Fbxo9 ugUCCGGUAGACACAAUAUAa || :| || ||||||| ccAGAAUACCUAAGUUAUAUg 2 20 44 64 [rn4:8:83056480-83056500:-] 0.5561 151 7 -9.70 -0.8225 MIMAT0005311 rno-miR-410 300849 Fbxo9 uguccgGUAGACACA-AUAUAa ||| |||| ||||| cauauaCAUACGUGUGUAUAUa 2 16 67 88 [rn4:8:83056456-83056477:-] 0.5791 123 0 -9.36 -0.7449

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099600 Fbxo9 Rattus norvegicus 300849

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Fbxo9 RAID00138387 rno-miR-7b miRNA MIMAT0000780 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID00194839 rno-miR-27a-3p miRNA MIMAT0000799 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID00453574 rno-miR-494-3p miRNA MIMAT0003193 Fbxo9 mRNA 300849 Prediction 0.2202 Fbxo9 RAID00644372 rno-miR-329-3p miRNA MIMAT0000566 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID00669758 rno-miR-139-5p miRNA MIMAT0000845 Fbxo9 mRNA 300849 Prediction 0.2202 Fbxo9 RAID00722048 rno-miR-34c-5p miRNA MIMAT0000814 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID01266794 rno-miR-132-3p miRNA MIMAT0000838 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID01294071 rno-miR-196c-3p miRNA MIMAT0017299 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID01329899 rno-miR-493-5p miRNA MIMAT0017217 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID01531439 rno-miR-361-3p miRNA MIMAT0017199 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID01827172 rno-miR-136-5p miRNA MIMAT0000842 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02117489 rno-miR-325-3p miRNA MIMAT0004639 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02149159 rno-miR-7a-5p miRNA MIMAT0000606 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02308638 rno-miR-34a-5p miRNA MIMAT0000815 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02403132 rno-miR-297 miRNA MIMAT0000899 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02410362 rno-miR-374-5p miRNA MIMAT0003208 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02435984 rno-miR-27b-3p miRNA MIMAT0000798 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02499417 rno-miR-212-3p miRNA MIMAT0000883 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID02828346 rno-miR-410-3p miRNA MIMAT0005311 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID03565623 rno-miR-449a-5p miRNA MIMAT0001543 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID03726766 rno-miR-6216 miRNA MIMAT0024856 Fbxo9 mRNA 300849 Prediction 0.1828 Fbxo9 RAID03834926 rno-miR-144-3p miRNA MIMAT0000850 Fbxo9 mRNA 300849 Prediction 0.1828