Vhl
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000547rno-miR-322*24874VhlacaacgucgcGAAGUACAaa | |||||| guaaaauaucCAUCAUGUaa31197116[rn4:4:149534256-149534275:+]0.69771220-5.30-0.1540
MIMAT0000547rno-miR-322*24874VhlacAACGUCGC--GAAGU-ACAAa || || :| ||||| |||| uuUUUCAUUGAACUUCAUUGUUu21914141436[rn4:4:149535573-149535595:+]0.51861210-9.73-0.5209
MIMAT0000550rno-miR-32324874VhlucuccagcuggcACAUUACAc |||||||| gucucuaaaagaUGUAAUGUu21019491969[rn4:4:149536108-149536128:+]0.55981457-8.02-0.8919
MIMAT0004645rno-miR-148b-5p24874VhlggacucACAUAU-UGUCUUGAAg ||| || | ||||||| agcuucUGUUUAGAAAGAACUUu217533555[rn4:4:149534692-149534714:+]0.55891557-12.03-0.3897
MIMAT0000813rno-miR-34b24874VhlguUAGUCGAUUAAUGUGA-CGGAu | || ||:||| ||| |||| caAACAACUGAUU--ACUGGCCUc22215531574[rn4:4:149535712-149535733:+]0.51861260-17.19-0.3590
MIMAT0004734rno-miR-138*24874VhlggGACCACAACACUUCAU-CGGc |||| | | ||||||| ||| ugCUGG-GAU-UGAAGUAUGCCu22116071627[rn4:4:149535766-149535786:+]0.51861280-19.16-0.3408
MIMAT0000847rno-miR-142-5p24874VhlucAUCACGAAAGAUGAA-AUAc |: ||:| |||||| ||| auUGAUGUUCACUACUUCUAUc22011401161[rn4:4:149535299-149535320:+]0.51861270-8.37-0.8838
MIMAT0000884rno-miR-181a*24874VhlccauGUUAGUUGCCAGCUACCa :|:|:| ||||||| gcgcUAGUUAUGCUUCGAUGGg21910081029[rn4:4:149535167-149535188:+]0.51861467-14.78-0.1265
MIMAT0000893rno-miR-29024874VhluuuuucacggGGGUAUCAAACUc |: : ||||||| ucuuauuuaaCUGGAAGUUUGAa21419721994[rn4:4:149536131-149536153:+]0.56901417-8.02-0.8729
MIMAT0004791rno-miR-379*24874VhlcaaucacCUGGUACAAUGUAUc | :: | ||||||| agucacaGCUUUUCUUACAUAu21611121133[rn4:4:149535271-149535292:+]0.51861437-4.14-0.3766
MIMAT0003195rno-miR-376b-5p24874VhlauUGGUAUCUUC--CUUAUAGGUg |:: | |:|| |||||||| ucAUUCUUGGAGUAAAAUAUCCAu22186109[rn4:4:149534245-149534268:+]0.69771517-15.25-0.7811
MIMAT0003205rno-miR-409-3p24874VhlccccaaguggcuCGUUGUAa ||||||| ugccgagcuauuGCAACAUu2919041923[rn4:4:149536063-149536082:+]0.60051407-14.79-0.6928
MIMAT0005279rno-miR-466c24874VhlguaCAUGUACGUG--UGUAGUGu | | :| || ||||||| aaaGAAAGUUAACUAACAUCACu219116138[rn4:4:149534275-149534297:+]0.69771417-10.75-0.9636
MIMAT0005280rno-miR-743b24874VhlagaUAAGUCAUACCACAGAAAg | |:|||| ||||||| cuaACUUAGUAACUUGUCUUUu22016371658[rn4:4:149535796-149535817:+]0.51861597-12.97-0.4900
MIMAT0005281rno-miR-87124874VhlacaCUGGCCGUGGUUAGAC-UUAu | || | ||:|||| ||| uggGUCCCAGAGCAGUCUGCAAUg22110711094[rn4:4:149535230-149535253:+]0.51861200-14.11-0.1401
MIMAT0005285rno-miR-87724874VhlggGACGCGGUAGAGGAGAUg :||| |::| ||||||| agUUGCUCUGUGUCCUCUAa219286305[rn4:4:149534445-149534464:+]0.49741627-20.45-0.4091
MIMAT0005288rno-miR-88024874VhlagaugagucuuacuuACCUCAu |||||| aaaaugguucauucuUGGAGUa287899[rn4:4:149534237-149534258:+]0.69771206-11.85-0.1461
MIMAT0005323rno-miR-532-3p24874VhlacGUUCGG-AACCCA-----CACCCUCc ||| || |||||| ||||||| aaCAAACCAUUGGGUACUUAGUGGGAGa221442469[rn4:4:149534601-149534628:+]0.55891587-26.73-0.5254
MIMAT0005323rno-miR-532-3p24874VhlacGUU-CGGAACCCACAC-CCUCc ||: |||| ||||| |||| ccCAGUGCCUAAUGUGUGUGGAGu221399422[rn4:4:149534558-149534581:+]0.55891270-21.60-0.1681
MIMAT0005333rno-miR-74224874VhlaaAUGGGUUGUA-CCAC-CGAAAg || |:||||| || ||||| guUAACUAACAUCACUGAGCUUUg221123146[rn4:4:149534282-149534305:+]0.69771270-12.47-0.7961
MIMAT0005337rno-miR-760-3p24874VhlagGGGUGUCUGGGUCUCGGc |:|::| : ||||||| gcCUCGUAUGAACAGAGCCc219319338[rn4:4:149534478-149534497:+]0.52821507-24.63-0.1017
MIMAT0012822rno-miR-20224874VhluuucuucAUAUACGUAUCCUu | || ||||||| aaauugaUCUACACAUAGGAc2153656[rn4:4:149534195-149534215:+]0.69771467-9.54-0.4865
MIMAT0012823rno-miR-49024874VhlguCGUACCUCAGGA-----GGUC-CAAc ||||| |||||| |||| ||| cuGCAUGUAGUCCUGUAACCCAGUGUUc22113081335[rn4:4:149535467-149535494:+]0.51861310-23.10-0.1781
MIMAT0012825rno-miR-10524874VhluggugucUGUAGACUCGUGAAc |::||| ||||||| aguuuccAUGUCUCAGCACUUu216562583[rn4:4:149534721-149534742:+]0.55891597-15.77-0.4173
MIMAT0012825rno-miR-10524874VhluggugucugUAGACUCGUGAAc :|: ||||||| uuuuaauugGUUAAAGCACUUu21413491370[rn4:4:149535508-149535529:+]0.51861417-9.30-0.4897
MIMAT0012825rno-miR-10524874VhluggugucUGUAGACUCGU-GAAc ||| || |||| ||| uaaaggaACAGCUUAGCAGCUUc216516538[rn4:4:149534675-149534697:+]0.55891230-9.18-0.6665
MIMAT0012825rno-miR-10524874VhluggugUCUGUAGACUC-GUGAAc :|||| |||| ||||| ccuuaGGACA--UGAGUCACUUg21820092029[rn4:4:149536168-149536188:+]0.57821220-20.41-0.1007
MIMAT0012826rno-miR-22024874VhluccaGAGACUGUGACAC-CACc ||: |:||:|||| ||| gaagCUUGGGCAUUGUGUGUGg21812231244[rn4:4:149535382-149535403:+]0.51861290-24.52-0.1583
MIMAT0012836rno-miR-62824874VhlggagaGCAUUUAUACAGUCGUa :||::: | ||||||| cugugUGUGGG-AAGUCAGCAg21818821902[rn4:4:149536041-149536061:+]0.55951477-15.35-0.1209
MIMAT0012836rno-miR-62824874VhlggaGAGCAUUU--A--UAC-AGUCGUa || ||||: | ||| |||||| uucCUAGUAAGGCUGGAUGUUCAGCAu220231257[rn4:4:149534390-149534416:+]0.61661216-20.57-0.1005
MIMAT0012840rno-miR-80224874VhluuccuacuuAGAAACAAUGACu || |||||||| cuugucuuuUCCAUGUUACUGc21416491670[rn4:4:149535808-149535829:+]0.51861497-12.03-0.2273
MIMAT0012854rno-miR-76424874VhluccUCCUGUACACUC-GUGg |||||| |||| ||| cuuAGGACA--UGAGUCACu21720102027[rn4:4:149536169-149536186:+]0.57821210-16.68-0.2506
MIMAT0000589rno-miR-342-3p24874VhlugcccacgCUAAAGACACACUCu ||| |: ||||||| agcauaagGAUGUUAGUGUGAGc216253275[rn4:4:149534412-149534434:+]0.61661557-13.88-0.2749
MIMAT0000602rno-miR-20a24874VhlgaUGGACGUGAUAUUCGUGAAAu | :|| ::|| ||||||||| uuAAUUG-GUUA-AAGCACUUUg22213511371[rn4:4:149535510-149535530:+]0.51861577-15.24-0.3287
MIMAT0000602rno-miR-20a24874VhlgaUGGACGUG-AUAUUCGUGAAAu :::| ||: | | |||||||| gaGUUUCCAUGUCUCAGCACUUUc222561584[rn4:4:149534720-149534743:+]0.55891567-13.71-0.6117
MIMAT0000786rno-miR-17-5p24874VhlgaUGGACGUG-ACAUUCGUGAAAc :::| ||: | | |||||||| gaGUUUCCAUGUCUCAGCACUUUc222561584[rn4:4:149534720-149534743:+]0.55891567-13.56-0.6117
MIMAT0000786rno-miR-17-5p24874VhlgaUGGACGUGAC--A-UUCGUGAAAc |::| |:|| | ||||||||| acAUUUUAAUUGGUUAAAGCACUUUg22213461371[rn4:4:149535505-149535530:+]0.51861557-18.67-0.3315
MIMAT0000814rno-miR-34c24874VhlcguuagucGAUUGAUGUGACGGa | | | ||||||| ugggcuucCCAUAUUCACUGCCc216841863[rn4:4:149535000-149535022:+]0.52471437-16.16-0.1721
MIMAT0000815rno-miR-34a24874VhluguuggucgauucuGUGACGGu ||||||| gggcuucccauauuCACUGCCc29842863[rn4:4:149535001-149535022:+]0.52471407-14.21-0.1704
MIMAT0000817rno-miR-9324874VhlgaUGGACGUGC-UUGUCGUGAAAc :::| ||:| ||||||||| gaGUUUCCAUGUCUCAGCACUUUc222561584[rn4:4:149534720-149534743:+]0.55891567-18.61-0.6043
MIMAT0000817rno-miR-9324874VhlgaUGGACGUGCUUGUCGUGAAAc | :|| :: || |||||||| uuAAUUG-GUUAA-AGCACUUUg22213511371[rn4:4:149535510-149535530:+]0.51861497-15.52-0.3315
MIMAT0000825rno-miR-106b24874VhluaGACGUG-ACAGUCGUGAAAu :| ||: | |||||||||| guUUCCAUGUCUCAGCACUUUc220563584[rn4:4:149534722-149534743:+]0.55891627-16.37-0.6117
MIMAT0000825rno-miR-106b24874VhluagacgugacagUCGUGAAAu |||||||| uuaauugguuaaAGCACUUUg21013511371[rn4:4:149535510-149535530:+]0.51861457-14.76-0.3315
MIMAT0000827rno-miR-12224874VhlguUUGUGGUAACAGUGUGAGGu ||| : || | ||||||| ugAACUUAAUACUGACACUCCu22117891810[rn4:4:149535948-149535969:+]0.51861567-13.10-0.1314
MIMAT0000828rno-miR-12424874VhlccGUAAGUGGCGCACGGAAu ::||| | :||||||| acUGUUCUC--UGUGCCUUa21919962013[rn4:4:149536155-149536172:+]0.57821477-17.33-0.6308
MIMAT0000838rno-miR-13224874VhlgcuGGUACCGACAUCUGACAAu || | | | ||||||| cucCCUUUGAGGGUGACUGUUg22017021723[rn4:4:149535861-149535882:+]0.51861477-15.13-0.1036
MIMAT0000840rno-miR-13424874VhlgggGAGACCAGUUG--GUCAGUGu | | |||||:| ||||||| uagCCCAGGUCAGCCUCAGUCACu220629652[rn4:4:149534788-149534811:+]0.51791627-28.05-0.1004
MIMAT0000840rno-miR-13424874VhlggggAGACCAGUUGGUCAGUGu |:|| ::: ||||||| guagUUUG--UGGGCAGUCACa21910991118[rn4:4:149535258-149535277:+]0.51861437-18.78-0.1958
MIMAT0000842rno-miR-13624874VhlagGUAGUAGU-UUUGUUUAC-CUCa | ||| || |:| ||||| ||| uuCCUCAGCAGAGAAAAAUGAGAGa22212001224[rn4:4:149535359-149535383:+]0.51861320-17.32-0.5364
MIMAT0000846rno-miR-14124874VhlggUAGAAAUGGUCUGUCACAAu :|||| ||| ||||||| gaGUCUU---CAGUCAGUGUUg221419437[rn4:4:149534578-149534596:+]0.55891567-18.75-0.1497
MIMAT0000846rno-miR-14124874VhlgguagaaAUGGUCUGUCACAAu |:: | ||||||| guaguccUGUAACCCAGUGUUc21613141335[rn4:4:149535473-149535494:+]0.51861437-11.49-0.1032
MIMAT0000850rno-miR-14424874VhlucauguaguagaUAUGACAu ||||||| cuggaaguuugaAUACUGUu2919822001[rn4:4:149536141-149536160:+]0.56901407-7.88-0.4574
MIMAT0000851rno-miR-14524874VhlucccuaaggacccuuUUGACCUg ||||||| auguuugucuuauuuAACUGGAa2919651987[rn4:4:149536124-149536146:+]0.55981407-12.00-1.0746
MIMAT0000852rno-miR-146a24874VhluuggguaccuuAAGUCAAGAGu || ||||||| uguacucuccuUUGAGUUCUCu21220652086[rn4:4:149536224-149536245:+]0.57821477-13.89-0.2517
MIMAT0000874rno-miR-200a24874VhluguagCAAUGGUCUGUCACAAu || :||| ||||||| guggaGUCUUCAGUCAGUGUUg218416437[rn4:4:149534575-149534596:+]0.55891577-18.41-0.1511
MIMAT0000883rno-miR-21224874VhlaccGGCACUGACCUCUGACAAu |: ||| || ||||||| uccCUUUGA-GGGUGACUGUUg22017031723[rn4:4:149535862-149535882:+]0.51861537-18.40-0.1025
MIMAT0000895rno-miR-291a-3p24874VhlccGUGUGUUUCACC---UUCGUGAAa ||: : || ||| |||||||| caCAUUUUAAUUGGUUAAAGCACUUu22213451370[rn4:4:149535504-149535529:+]0.51861567-17.85-0.4897
MIMAT0000895rno-miR-291a-3p24874VhlccguguGUUUCACCUUCGUGAAa | | || ||||||| gaguuuCCAUGUCUCAGCACUUu218561583[rn4:4:149534720-149534742:+]0.55891457-11.58-0.4111
MIMAT0000903rno-miR-32024874VhlagcgggagaGUUGG-GUCGAAAa ||::| ||||||| guuugugggCAGUCACAGCUUUu21411021124[rn4:4:149535261-149535283:+]0.51861487-15.98-0.3759
MIMAT0001543rno-miR-449a24874VhluggUCGAUUGUUAU--GUGACGGu :||| | ||| ||||||| gugGGCUUCCCAUAUUCACUGCCc220840863[rn4:4:149534999-149535022:+]0.52471547-17.00-0.1704
MIMAT0001549rno-miR-36524874VhluaUUCCUAAAAAUCCCCGUAAu |: || || ||||||| ugAGAGAAGCUU--GGGCAUUg22112181237[rn4:4:149535377-149535396:+]0.51861417-13.26-0.1724
MIMAT0001628rno-miR-43324874VhluguggcuccucGGGUAGUACua :|||||||| ggaguaaaauaUCCAUCAUGua31294115[rn4:4:149534253-149534274:+]0.69771310-17.45-0.1380
MIMAT0003122rno-miR-37024874VhluugguccaagguggGGUCGUCCg :||||||| cugugugugggaagUCAGCAGGu21018821904[rn4:4:149536041-149536063:+]0.55951417-15.78-0.1296
MIMAT0003203rno-miR-48524874VhlcuUAAGUAGUG-CCGGUCGGAGa :| :| | | ||:||||||| uuGUGUAGCCCAGGUCAGCCUCa221624646[rn4:4:149534783-149534805:+]0.51791557-20.70-0.3740
MIMAT0003203rno-miR-48524874VhlcuuaaguagugccgGUCGGAGa ||||||| uaaucugaagaauaCAGCCUCg29303324[rn4:4:149534462-149534483:+]0.49741407-13.44-0.4336
MIMAT0003211rno-miR-20b-5p24874VhlugGACGUG-AUACUCGUGAAAc :| ||: | | |||||||| guUUCCAUGUCUCAGCACUUUc220563584[rn4:4:149534722-149534743:+]0.55891547-13.59-0.6117
MIMAT0003211rno-miR-20b-5p24874VhlugGACGUGAUACUCGUGAAAc :|| ::|| |||||||| aaUUG-GUUA-AAGCACUUUg22013531371[rn4:4:149535512-149535530:+]0.51861477-15.61-0.3287
MIMAT0005299rno-miR-181d24874VhlugGGUGGCUGUUGU-UAC-UUACAa |:::| :|| | ||| ||||| cuCUGUCUCUAAAAGAUGUAAUGUu22219451969[rn4:4:149536104-149536128:+]0.55981200-11.18-0.7285
MIMAT0005320rno-miR-49524874VhluucuucACGUGGUACAAACAAa ||: :: ||||||| ugguuuUGUUUUUGGUUUGUUu21714601481[rn4:4:149535619-149535640:+]0.51861447-8.84-0.7006
MIMAT0005595rno-miR-146b24874VhlugucggauaccuuAAGUCAAGAGu || ||||||| uuuguacucuccuUUGAGUUCUCu21220632086[rn4:4:149536222-149536245:+]0.57821477-12.34-0.2517
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G093299VhlRattus norvegicus24874
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
VhlRAID00015295rno-miR-134-5pmiRNAMIMAT0000840VhlmRNA24874Prediction0.1828
VhlRAID00027107rno-miR-320-3pmiRNAMIMAT0000903VhlmRNA24874Prediction0.1828
VhlRAID00042390rno-miR-146a-5pmiRNAMIMAT0000852VhlmRNA24874Prediction0.1828
VhlRAID00076894rno-miR-449a-5pmiRNAMIMAT0001543VhlmRNA24874Prediction0.1828
VhlRAID00101504rno-miR-124-3pmiRNAMIMAT0000828VhlmRNA24874Prediction0.2202
VhlRAID00107103rno-miR-17-5pmiRNAMIMAT0000786VhlmRNA24874Prediction0.2202
VhlRAID00112228rno-miR-20a-5pmiRNAMIMAT0000602VhlmRNA24874Prediction0.2202
VhlRAID00128906rno-miR-136-5pmiRNAMIMAT0000842VhlmRNA24874Prediction0.1828
VhlRAID00197622rno-miR-105miRNAMIMAT0012825VhlmRNA24874Prediction0.1828
VhlRAID00235704rno-miR-132-3pmiRNAMIMAT0000838VhlmRNA24874Prediction0.1828
VhlRAID00302222rno-miR-20b-5pmiRNAMIMAT0003211VhlmRNA24874Prediction0.2202
VhlRAID00313413rno-miR-370-3pmiRNAMIMAT0003122VhlmRNA24874Prediction0.1828
VhlRAID00325792rno-miR-365-3pmiRNAMIMAT0001549VhlmRNA24874Prediction0.1828
VhlRAID00326780rno-miR-93-5pmiRNAMIMAT0000817VhlmRNA24874Prediction0.2202
VhlRAID00875014rno-miR-106b-5pmiRNAMIMAT0000825VhlmRNA24874Prediction0.2202
VhlRAID00958494rno-miR-34c-5pmiRNAMIMAT0000814VhlmRNA24874Prediction0.1828
VhlRAID01103786rno-miR-485-5pmiRNAMIMAT0003203VhlmRNA24874Prediction0.1828
VhlRAID01319148rno-miR-532-3pmiRNAMIMAT0005323VhlmRNA24874Prediction0.1828
VhlRAID01421100rno-miR-212-3pmiRNAMIMAT0000883VhlmRNA24874Prediction0.1828
VhlRAID01704656rno-miR-200a-3pmiRNAMIMAT0000874VhlmRNA24874Prediction0.1828
VhlRAID01818030rno-miR-126bmiRNAMIMAT0017843VhlmRNA24874Prediction0.1828
VhlRAID01875410rno-miR-143-5pmiRNAMIMAT0017129VhlmRNA24874Prediction0.1828
VhlRAID01932864rno-miR-34a-5pmiRNAMIMAT0000815VhlmRNA24874Prediction0.1828
VhlRAID02302544rno-miR-144-3pmiRNAMIMAT0000850VhlmRNA24874Prediction0.1828
VhlRAID02330097rno-miR-495miRNAMIMAT0005320VhlmRNA24874Prediction0.1828
VhlRAID02341211rno-miR-145-5pmiRNAMIMAT0000851VhlmRNA24874Prediction0.2202
VhlRAID02525428rno-miR-291a-3pmiRNAMIMAT0000895VhlmRNA24874Prediction0.2202
VhlRAID02671409rno-miR-342-3pmiRNAMIMAT0000589VhlmRNA24874Prediction0.1828
VhlRAID02788724rno-miR-191a-3pmiRNAMIMAT0017146VhlmRNA24874Prediction0.1828
VhlRAID02951561rno-miR-883-5pmiRNAMIMAT0017294VhlmRNA24874Prediction0.1828
VhlRAID02979895rno-miR-433-3pmiRNAMIMAT0001628VhlmRNA24874Prediction0.1828
VhlRAID03011730rno-miR-122-5pmiRNAMIMAT0000827VhlmRNA24874Prediction0.1828
VhlRAID03181796rno-miR-743b-3pmiRNAMIMAT0005280VhlmRNA24874Prediction0.1828
VhlRAID03282291rno-miR-218a-1-3pmiRNAMIMAT0017162VhlmRNA24874Prediction0.1828
VhlRAID03390335rno-miR-33-3pmiRNAMIMAT0017104VhlmRNA24874Prediction0.1828
VhlRAID03393431rno-miR-141-3pmiRNAMIMAT0000846VhlmRNA24874Prediction0.1828
VhlRAID03741547rno-miR-17-2-3pmiRNAMIMAT0017295VhlmRNA24874Prediction0.1828
VhlRAID03878787rno-miR-93-3pmiRNAMIMAT0017109VhlmRNA24874Prediction0.1828
VhlRAID03948986rno-miR-146b-5pmiRNAMIMAT0005595VhlmRNA24874Prediction0.1828
VhlRAID03988561rno-miR-181d-5pmiRNAMIMAT0005299VhlmRNA24874Prediction0.1828