DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000577 rno-miR-337 315863 Ube2cbp uuUCCGUAGUA-U-AUC-CUCGACUu ||| | | | | |:| ||||||| cgAGGGAACUUCACUGGAGAGCUGAg 2 22 429 454 [rn4:8:91537558-91537583:-] 0.6119 150 7 -21.11 -0.3784 MIMAT0004705 rno-let-7b* 315863 Ube2cbp ccCUUCCGUCAUC-CAACAU-AUc ||| |: |||| |||||| || agGAAAGUCGUAGUGUUGUAGUAg 2 21 272 295 [rn4:8:91537717-91537740:-] 0.6119 135 0 -20.53 -0.4632 MIMAT0004714 rno-miR-26b* 315863 Ube2cbp cucggUUCAUU--ACCUCUUGUCc || ||| || ||||||| acaagAACUAAGCUGCAGAACAGg 2 18 164 187 [rn4:8:91537825-91537848:-] 0.6119 156 7 -20.35 -0.2239 MIMAT0004719 rno-miR-30c-1* 315863 Ube2cbp ccUCAUUUGUUGGGA-GAGGGUc ||| :|| |:|| |||||| gaAGU-UGCACCUCUACUCCCAc 2 21 320 341 [rn4:8:91537671-91537692:-] 0.6119 126 6 -19.08 -0.5747 MIMAT0004728 rno-miR-124* 315863 Ube2cbp uaguucCAGGCGACACUUGUGc |||| ||||||||| ccaucuGUCCUGUGUGAACACa 2 17 406 427 [rn4:8:91537585-91537606:-] 0.6119 164 7 -20.94 -0.3056 MIMAT0000897 rno-miR-292-3p 315863 Ube2cbp ugUGAGUUUUGGACCGCCGUGAa |:||||| | ||||||| auAUUCAAA---U--CGGCACUg 2 22 350 367 [rn4:8:91537645-91537662:-] 0.6119 146 7 -18.47 -0.6614 MIMAT0005280 rno-miR-743b 315863 Ube2cbp agAUAAGUCAUACCACAGAAAg |:||:| | ||||||| uuUGUUUA-AAGCAUGUCUUUa 2 21 503 523 [rn4:8:91537489-91537509:-] 0.6119 146 7 -10.03 -1.2459 MIMAT0005334 rno-miR-743a 315863 Ube2cbp agaugggucaaaccGCAGAAAg :|||||| guuuguuuaaagcaUGUCUUUa 2 9 502 523 [rn4:8:91537489-91537510:-] 0.6119 124 6 -10.26 -0.2758 MIMAT0005336 rno-miR-760-5p 315863 Ube2cbp gcccgagaCCACCGGACUCCCc | | |||||||| caauuaaaGUUUUCCUGAGGG- 2 15 596 616 [rn4:8:91537396-91537416:-] 0.6119 146 7 -17.41 -1.2007 MIMAT0012823 rno-miR-490 315863 Ube2cbp gucguaccUCAGGAGGUCCAAc || ||||||||| acuuuuaaAGAGCUCCAGGUUu 2 15 484 505 [rn4:8:91537507-91537528:-] 0.6119 154 7 -17.88 -0.8487 MIMAT0012824 rno-miR-513 315863 Ube2cbp uaCUUUCUGUGGA-A-GA-ACACUu |||| ||:|| | || ||||| ugGAAACCCAUCUGUCCUGUGUGAa 2 21 399 423 [rn4:8:91537589-91537613:-] 0.6119 126 0 -16.44 -0.3180 MIMAT0012831 rno-miR-544 315863 Ube2cbp cucgaacGAUUUUUACGUCUUa || ||: ||||||| acaagaaCU-AAGCUGCAGAAc 2 16 164 184 [rn4:8:91537828-91537848:-] 0.6119 149 7 -12.63 -0.2850 MIMAT0012832 rno-miR-568 315863 Ube2cbp cacacauauguaaAUAUGUa |||||| uuaaaaacuaaaaUAUACAa 2 8 521 540 [rn4:8:91537472-91537491:-] 0.6119 120 6 -5.21 -0.2938 MIMAT0012836 rno-miR-628 315863 Ube2cbp ggagAGCAUUUAUACAGUCGUa ||| | |: ||||||| caaaUCGGCACUGCGUCAGCAc 2 19 355 376 [rn4:8:91537636-91537657:-] 0.6119 154 7 -14.49 -0.1301 MIMAT0012845 rno-miR-935 315863 Ube2cbp cgccaucgcCUUCGCCAUUGACc |||| ||||||| ggccuuuuuGAAGAUGUAACUGu 2 15 43 65 [rn4:8:91537947-91537969:-] 0.6119 154 7 -13.59 -0.7417 MIMAT0012850 rno-miR-465 315863 Ube2cbp guguggucgUGGCAAGAUUUAu ||:| ||||||| ugagugucaACUGCUCUAAAUc 2 14 451 472 [rn4:8:91537540-91537561:-] 0.6119 153 7 -11.82 -0.2275 MIMAT0012852 rno-miR-667 315863 Ube2cbp gaaCCCGAC-CCACCGUCC-ACAGu | |:|| || ||||| |||| guaGUGUUGUAGUAGCAGGUUGUCg 2 21 281 305 [rn4:8:91537707-91537731:-] 0.6119 127 0 -20.26 -0.6341 MIMAT0012853 rno-miR-761 315863 Ube2cbp acACAGUCAAAGUGGGACGACg ||| || || ||||||| ucUGUGAG-CACAGCCUGCUGa 2 21 138 158 [rn4:8:91537854-91537874:-] 0.6119 154 7 -21.37 -0.4893 MIMAT0012854 rno-miR-764 315863 Ube2cbp uccuccuguACACUCGUGg ||||||||| agguagcucUGUGAGCACa 2 11 131 149 [rn4:8:91537863-91537881:-] 0.6119 150 7 -20.94 -0.3732 MIMAT0000817 rno-miR-93 315863 Ube2cbp gaUGGACGUGCUUGUCGU-GAAAc | |||:: |:| ||| |||| guAACUGUGGAAGCUGCAGCUUUc 2 22 58 81 [rn4:8:91537931-91537954:-] 0.6119 125 0 -12.73 -0.2356 MIMAT0000862 rno-miR-185 315863 Ube2cbp agUCCUUGACGGAAAGA-GAGGu || |::||| ||| |||| auAGAAGUUGCACCUCUACUCCc 2 21 317 339 [rn4:8:91537673-91537695:-] 0.6119 124 0 -17.14 -0.6269 MIMAT0000865 rno-miR-190 315863 Ube2cbp ugGAUUAUAUA-GUU----UGUAUAGu |||| |||| ||| |||||| aaCUAAAAUAUACAAGUUUUCAUAUCu 2 21 526 552 [rn4:8:91537460-91537486:-] 0.6119 130 6 -13.11 -0.2168 MIMAT0000885 rno-miR-214 315863 Ube2cbp gacggacagacaCGGACGACa |||||||| ucugugagcacaGCCUGCUGa 2 10 138 158 [rn4:8:91537854-91537874:-] 0.6119 145 7 -19.56 -0.4893 MIMAT0000903 rno-miR-320 315863 Ube2cbp agcgggagagUUGG-GUCGAAAa |:|: ||||||| uaacuguggaAGCUGCAGCUUUc 2 13 59 81 [rn4:8:91537931-91537953:-] 0.6119 143 7 -12.30 -0.1763 MIMAT0003122 rno-miR-370 315863 Ube2cbp uuggUCCAAGGUGGGGUCGUCCg | || | |:||||||| gcugAUGUGGAAACUCAGCAGGu 2 20 20 42 [rn4:8:91537970-91537971,91538888-91538908:-] 0.6139 151 7 -18.81 -0.2905 MIMAT0003122 rno-miR-370 315863 Ube2cbp uuggucCAAGGUGGGGUCGUCCg || | |:||||||| -----uGUAGGAGCUCAGCAGGa 2 18 1 18 [rn4:8:91538910-91538927:-] 0.6160 149 7 -21.59 -0.5086 MIMAT0003122 rno-miR-370 315863 Ube2cbp uugguccaaGGUGGGGUCGUCCg | | |||||||| gaauacagcCAAGGCCAGCAGGu 2 15 112 134 [rn4:8:91537878-91537900:-] 0.6119 146 7 -24.06 -0.1557 MIMAT0003123 rno-miR-377 315863 Ube2cbp gguuuucaACGGAAACACACUa ||:| ||||||| aacccaucUGUC-CUGUGUGAa 2 15 403 423 [rn4:8:91537589-91537609:-] 0.6119 144 7 -14.49 -0.3185 MIMAT0003123 rno-miR-377 315863 Ube2cbp ggUUUUCAACGGAAACAC-ACUa |:|| | | ||||| ||| gcAGAACAGGGCCUUGUGCUGAa 2 21 178 200 [rn4:8:91537812-91537834:-] 0.6119 120 0 -16.31 -1.0538 MIMAT0003192 rno-miR-379 315863 Ube2cbp ggAUG-CAAGGUAUCAGAUGGu |:| | |:: |:||||||| gcUGCAGCUUUCUGGUCUACCa 2 20 70 91 [rn4:8:91537921-91537942:-] 0.6119 154 7 -24.03 -0.5563 MIMAT0005302 rno-miR-190b 315863 Ube2cbp uuggauuauaguuuGUAUAGu |||||| aauauacaaguuuuCAUAUCu 2 8 532 552 [rn4:8:91537460-91537480:-] 0.6119 120 6 -8.71 -0.2208 MIMAT0005320 rno-miR-495 315863 Ube2cbp uucUUCACGUGGUACAAACAAa ||| || ||| ||||||| uuaAAGAGCUCCAGGUUUGUUu 2 20 488 509 [rn4:8:91537503-91537524:-] 0.6119 171 7 -17.04 -0.9094

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101581 Ube3d Rattus norvegicus 315863

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ube3d RAID00171739 rno-miR-185-3p miRNA MIMAT0017142 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID00499160 rno-miR-379-5p miRNA MIMAT0003192 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID01371619 rno-miR-672-3p miRNA MIMAT0017312 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID01426427 rno-miR-93-5p miRNA MIMAT0000817 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID01487648 rno-miR-3575 miRNA MIMAT0017861 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID01575820 rno-miR-377-3p miRNA MIMAT0003123 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID01790475 rno-miR-3557-3p miRNA MIMAT0017820 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID01826882 rno-miR-370-3p miRNA MIMAT0003122 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID02646586 rno-miR-495 miRNA MIMAT0005320 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID02748237 rno-miR-320-3p miRNA MIMAT0000903 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID02935886 rno-miR-185-5p miRNA MIMAT0000862 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID03044637 rno-miR-667-5p miRNA MIMAT0017369 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID03065008 rno-miR-190b-5p miRNA MIMAT0005302 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID03269188 rno-miR-190a-5p miRNA MIMAT0000865 Ube3d mRNA 315863 Prediction 0.1828 Ube3d RAID03927153 rno-miR-214-3p miRNA MIMAT0000885 Ube3d mRNA 315863 Prediction 0.1828