DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cul9 rno-miR-10a 20 45 -GUGUUUAA--GCCUAGAUGUCCCAU | :|: ||| | :||||| CCUGGAGCUGCCGGGGCAGCAGGGC- Cul9 rno-miR-10b 16 45 -UGUG--UUUAA---GCCAAGAUGUCCC- |||| ::| ||| | :||||| AACACCUGGAGCUGCCGGGGCAGCAGGGC Cul9 rno-miR-125a 37 71 GUGUCCAAUU-UCCC-AGAGU--------CCCU- :|||| :||| | ||| |||| AGCAGGGCCACGGGGCUGUCAUGUGAGAGGGGAA Cul9 rno-miR-125b 20 45 AGUGUUCAA---UCCCAGAGUCCCU | :|| :||| ||||| CCUGGAGCUGCCGGGGCAGCAGGGC Cul9 rno-miR-129* 1 13 UACGAAAAACCCCAUUCCCGAA |||| :|||| ---------GGGGGAGGGGCA- Cul9 rno-miR-133a 49 78 UGUCGACCA---ACU-UCCCCU---GGUU- :|||| ||| |||||| |||: -GGGCUGUCAUGUGAGAGGGGAACCCCAGU Cul9 rno-miR-133b 49 78 AUCGACCA---ACU-UCCCCU---GGUU- :|||| ||| |||||| |||: GGGCUGUCAUGUGAGAGGGGAACCCCAGU Cul9 rno-miR-145 4 38 -UUCCCUAA-------GGACCCUUUUGA-CCUG- :||||: ||||| :| ||:| GGAGGGGCAGGAAACACCUGGAGCUGCCGGGGCA Cul9 rno-miR-18 76 93 -AUAGACGUGAUCUACGUGGAAU |:|||| ||||||| GUGUCUGAA------GCACCUUC Cul9 rno-miR-187 23 51 GC-CGACG---UUGU-GUUCU-GUGCU- | ||||| ::|| ||:|: ||||: GGAGCUGCCGGGGCAGCAGGGCCACGGG Cul9 rno-miR-193 47 79 GACCCUGAA---ACA----UCC-----GGUCAA |||:|| ||| :|| ||||| -CGGGGCUGUCAUGUGAGAGGGGAACCCCAGUG Cul9 rno-miR-199a 7 36 -CUUGUCCAUCA--GACUU--GUGACCC- |::|||| |||:| ::| ||| GGGGCAGGAAACACCUGGAGCUGCCGGGG Cul9 rno-miR-204 32 71 -UCCGUA--UCC-------------UACUGUUUCCCUU- :|||| :|| ||| |:||||:| GGGGCAGCAGGGCCACGGGGCUGUCAUGUGAGAGGGGAA Cul9 rno-miR-207 1 29 UUCCCUCCUCUCGGUCCU-------CUUCG- ||:||||:| ||||| |:||| ---GGGGGAGGGGCAGGAAACACCUGGAGCU Cul9 rno-miR-211 32 71 -UCCGUU-UCCU--------------ACUGUUUCCCUU- :||||: |||: || |:||||:| GGGGCAGCAGGGCCACGGGGCUGUCAUGUGAGAGGGGAA Cul9 rno-miR-212 28 57 CCGGCACUGA----CC-----UCUGACAAU |||| |:| || :|:|||| UGCCGGGGCAGCAGGGCCACGGGGCUGUC- Cul9 rno-miR-22 9 41 -UGUCAA-----GAAGUUGA-----CCGUCGAA :||| || |:|| |||||| GGCAGGAAACACCUGGAGCUGCCGGGGCAGCA- Cul9 rno-miR-224 62 83 AUUUGCCUUGGUGAUCACUGAAC :|: |||||| | |||| || AGAGGGGAACC-CCAGUGUCUG- Cul9 rno-miR-24 20 48 -GACAAGGACGA-CUUGA---CUCGGU- ||| |||| |::| |:|||| CCUGGAGCUGCCGGGGCAGCAGGGCCAC Cul9 rno-miR-296 45 75 -UGUCCUA-------ACUC-CCCCCCGGGA ||:||: |||| |||| ||| CACGGGGCUGUCAUGUGAGAGGGGAACCCC Cul9 rno-miR-298 3 33 -CCUUCUUGUCG-----GGAGGA-GACGG- |||:|::||| ||| ||||| GGGAGGGGCAGGAAACACCUGGAGCUGCCG Cul9 rno-miR-299 52 74 UACA-UACACCCUGCCAUUUGGU ||| ||||| || || :|||| CUGUCAUGUGAGAGGG-GAACCC Cul9 rno-miR-30c 59 101 CGACUCU-----------CACAUCCU---------ACAAAUGU ||||| |||| || ||||||| -GUGAGAGGGGAACCCCAGUGUCUGAAGCACCUUCUGUUUACU Cul9 rno-miR-30e 72 101 AGGUCAGUUCCU---------ACAAAUGU ||||| || ||||||| CCCAGUGUCUGAAGCACCUUCUGUUUACU Cul9 rno-miR-322 31 62 ACAACGUCG-----------CGA-AGUACAAA | ||||| ||| |||||| CGGGGCAGCAGGGCCACGGGGCUGUCAUGUG- Cul9 rno-miR-324-3p 35 63 GGUCGUCGUGGA-CCCCGU-----CACC |||||| :|| ||||| ||| GCAGCAGGGCCACGGGGCUGUCAUGUGA Cul9 rno-miR-324-5p 34 63 -UGUGGUUACGGGAUCCCC-----UACGC- :|| || ||| |||| |||:| GGCAGCAGGGCCAC-GGGGCUGUCAUGUGA Cul9 rno-miR-326 1 28 UGACCUCCUUCCCG---------GGUCUCC ||:|||:|||| |::||| ---GGGGGAGGGGCAGGAAACACCUGGAGC Cul9 rno-miR-328 3 35 UGCCUUCCCGUC---------UCUCC-CGGUC- |||:|||||| :||| |||:| -GGGAGGGGCAGGAAACACCUGGAGCUGCCGGG Cul9 rno-miR-331 31 54 AAGAUCCUA---UCCGGGU-CCCCG- :||: ||| ||| ||||| ---CGGGGCAGCAGGGCCACGGGGCU Cul9 rno-miR-337 47 72 UUUCCG-UAGUAUAUCCUCGACUU- ::||| :||||:|: ||| ||| CGGGGCUGUCAUGUGAGAGGGGAAC Cul9 rno-miR-339 23 45 ACUCGAGGACCUCC-UGUCCCU ||||| | ||:| :||||| GGAGCUGCCGGGGCAGCAGGGC Cul9 rno-miR-340 49 70 -CCGAUAUUUCAUUGACUCUGCCU- ||||:| | ||||| ||: GGGCUGUC----AUGUGAGAGGGGA Cul9 rno-miR-342 45 66 CUGCCCACGCUAAAGACACACUCU- ||||| || || ||||||| CACGGG-GCUG--UCA-UGUGAGAG Cul9 rno-miR-343 40 71 AGACCCGUGUGCCUC-------------CCUCU- |||| |||||:| ||:|| --AGGGC-CACGGGGCUGUCAUGUGAGAGGGGAA Cul9 rno-miR-345 17 42 CGU-GACCU-GAU--CCCCAGUCGU- || ||||| ||: |||| ||||| ACACCUGGAGCUGCCGGGG-CAGCAG Cul9 rno-miR-346 5 42 -UCUCCGUCCG----------UGAG---UCCGUCUGU- ||:|||||| :|| :||||| || GAGGGGCAGGAAACACCUGGAGCUGCCGGGGCAG-CAG Cul9 rno-miR-347 7 39 ACCCGC------UGGGUCU------CCCUGU- |||| |||::|| |||:|| GGGGCAGGAAACACCUGGAGCUGCCGGGGCAG Cul9 rno-miR-349 22 46 -UCUCCAA--UUCUGUCGUCCCGAC :||| ::|:||||||||| UGGAGCUGCCGGGGCAGCAGGGCC- Cul9 rno-miR-351 40 71 GUCCGAGUUUCCCGAGGAG-------UCCCU- :||| || :||||| : :|||| AGGGC-CACGGGGCUGUCAUGUGAGAGGGGAA Cul9 rno-miR-370 18 44 UUGGUCCAAGGUGGG---GUCGUCCG ||| || |::|| ||||||| CACCUGGAGCUGCCGGGGCAGCAGGG Cul9 rno-miR-378 9 37 UGUGUCCU----GGACCUCA---GUCCUC :||||| ||||||| |:||: -GGCAGGAAACACCUGGAGCUGCCGGGGC Cul9 rno-miR-409-3p 6 42 -CCCCAA-----GUGG-----------CUCGUUGUAA |||| |||| |:|||:|| AGGGGCAGGAAACACCUGGAGCUGCCGGGGCAGCAG- Cul9 rno-miR-431 27 46 -ACGUACUGCCGGACGUUCUGU ||| | ||| |||:|:| CUGCCGG--GGCA-GCAGGGCC Cul9 rno-miR-505 65 85 -CCUUUGGUCGUUCACA-ACUG ||:|||| ||||| ||| GGGGAACCCC--AGUGUCUGAA Cul9 rno-miR-10a 23 45 guguuuaaGCCUAGAUGUCCCau |||: | :||||| ggagctgcCGGGGCAGCAGGGcc Cul9 rno-miR-10b 17 43 UGUG---UUUAA--GCCAAGAUGUCCC |||| :|: | ||| | :||||| ACACCTGGAGCTGCCGGGGCAGCAGGG Cul9 rno-miR-125a 29 52 guGUCCAAUU-UCCCAGAGUCCCu |:|| |: |||| | |:||| gcCGGGGCAGCAGGGCCACGGGGc Cul9 rno-miR-125b 31 52 aguguucaaUCCCAGAGUCCCu |||| | |:||| cggggcagcAGGGCCACGGGGc Cul9 rno-miR-129* 1 13 uacgaaaaaCCCCAUUCCCGaa |||| |:|||| ---------GGGGGAGGGGCag Cul9 rno-miR-133a 48 74 uguCGAC----CAACUUCCCC-UGGuu |||| || :||||| ||| gggGCTGTCATGTGAGAGGGGAACCcc Cul9 rno-miR-145 5 26 uUCCCUAAGGACCCUU-UUGACCUg ||||: | || || | ||||| gAGGGG---CAGGAAACACCTGGAg Cul9 rno-miR-18 73 92 auagACGUGAUCUACGUGGAAu ||: || || ||||||| ccagTGT-CT-GAAGCACCTTc Cul9 rno-miR-187 31 49 GCCGACGUUGUGUUCUGUGCu ||| |||:|| ::| |||| CGG-GGCAGCA-GGGCCACGg Cul9 rno-miR-193 30 49 GACCCUGAAACAU-CCGGUcaa | |||:| | | ||||| CCGGGGC--AGCAGGGCCAcgg Cul9 rno-miR-199a 4 25 CUUGUCCAUCAGAC-UUGU-GACCc |:| :|| || | |||| |||| GGAGGGGCAG---GAAACACCTGGa Cul9 rno-miR-204 49 69 uCCGUAUCCUACUGUUUCCCUU ||| |: ||| |:||||:| gGGC-TGTCATGTGAGAGGGGA Cul9 rno-miR-207 6 39 UUCCC-UCCU--------CUCG--GUCCUCUUCG |:||| |||| |||| | ||:| ||| AGGGGCAGGAAACACCTGGAGCTGCCGGGGCAGC Cul9 rno-miR-211 41 69 uCCGUUUCC-------UACUGUUUCCCUU ||| | || ||| |:||||:| gGGCCACGGGGCTGTCATGTGAGAGGGGA Cul9 rno-miR-212 37 57 cCGGCACUGACCUCUGACAau || | | | |:|:|||| aGCAGGGCCACGGGGCTGTca Cul9 rno-miR-22 17 41 UGUCAAGAAGUUGA-----CCGUCGaa ||| || |:|| |||||| ACA--CCTGGAGCTGCCGGGGCAGCag Cul9 rno-miR-224 62 83 auUUGCCUUGGUGAUCACUGAac |: |||||| | |||| || agAGGGGAACC-CCAGTGTCTga Cul9 rno-miR-24 21 46 GACAAGGACGAC----UUGACUCGGU ||| |||| | |:| |:|||| CTGGAGCTGCCGGGGCAGCAGGGCCA Cul9 rno-miR-296 46 74 UGUCC------UA-ACUCCCCCCC--GGGa ||:|| || ||| | |||| ||| ACGGGGCTGTCATGTGA-GAGGGGAACCCc Cul9 rno-miR-298 4 31 CCUUCUUGUC--GGGAGGA----GACGG |||:|::||| | ||| ||||| GGAGGGGCAGGAAACACCTGGAGCTGCC Cul9 rno-miR-322 42 62 acaacGUCGCGA-AGUACAaa |:| ||| |||||| ggccaCGGGGCTGTCATGTga Cul9 rno-miR-324-3p 20 41 GGUCGUCGUGGACCCCGUCacc || | ||| | ||||||| CCTGGAGCTGCCGGGGCAGcag Cul9 rno-miR-324-5p 35 56 uGUGGUUACGG-GAUCCCCUACgc || ||: ||| | |||| || gCAGCAGGGCCAC--GGGGCTGtc Cul9 rno-miR-328 27 47 ugccuuCCCGUCUCUCCCGGUc |||||| ||||||| ctgccgGGGCAG-CAGGGCCAc Cul9 rno-miR-328 1 13 ugccuucCCGUCUCUCCCGGUC || |:||||| ||| -------GG--GGGAGGGGCAG Cul9 rno-miR-331 29 52 aaGAUCC--UAUCCGGGU-CCCCG | :|| : ||| ||| ||||| gcCGGGGCAGCAGGGCCACGGGGC Cul9 rno-miR-337 31 56 uuuCCGUAGUAU--AU-CCUCGACuu |||| || : | ||:|||| cggGGCAGCAGGGCCACGGGGCTGtc Cul9 rno-miR-339 14 36 acUCGAGGACCUC--CUGUCCCu | | ||||||| | |:||| gaAACACCTGGAGCTGCCGGGGc Cul9 rno-miR-340 50 68 CCGAUAUUUCAUUGACUCUGCCu ||||:| | | ||||| || GGCTGTCATG----TGAGAGGGg Cul9 rno-miR-342 45 66 cUGCCCACGCUAAAG-ACACACUCu ||||| || | || |||| ||| cACGGG-GC--TGTCATGTGAGAGg Cul9 rno-miR-343 46 70 aGACCCG--UGUGC---CUCCCucu | |||| ||:| ||||| aCGGGGCTGTCATGTGAGAGGGgaa Cul9 rno-miR-346 6 41 UCUCCGUCC---GU-------GA--G-UCCGUCugu ||:|||||| || || | :||||| AGGGGCAGGAAACACCTGGAGCTGCCGGGGCAGcag Cul9 rno-miR-347 1 12 acccgcuggguCUCCCUGU |||||:|| -------ggggGAGGGGCA Cul9 rno-miR-347 22 46 ACC-CGCUGG----GUC-UCCCUGU ||| || :|| ||| |||| || TGGAGCTGCCGGGGCAGCAGGGCCA Cul9 rno-miR-349 23 46 uCUC--CAAUUCUGUCGUCCCGac ||| | ::|:||||||||| gGAGCTGCCGGGGCAGCAGGGCca Cul9 rno-miR-351 30 52 GUCCGAGUU-UCCCGAGGAGUCCCu | || ||: |||| || |:||| CCGGGGCAGCAGGG--CCACGGGGc Cul9 rno-miR-365 1 15 uauuccuaaaaaUCCCCGUaau ||||||| -------gggggAGGGGCAgga Cul9 rno-miR-370 18 43 uUGGUCCAAGGUGG---GGUCGUCCg ||| || |::|| ||||||| cACCTGGAGCTGCCGGGGCAGCAGGg Cul9 rno-miR-378 1 16 uguguCCUGGACCUCAGUCCUc ||| |:| ||||| --gggGGA----GGGGCAGGAa Cul9 rno-miR-409-3p 23 42 CCCCAAGUGGCUCGUUGUaa || | | | |:|||:|| GGAGCTGCCGGGGCAGCAgg Cul9 rno-miR-431 25 45 aCGUACUG-CCGGACGUUCUGu || || | || | |||:|:| aGC-TGCCGGGGCAGCAGGGCc Cul9 rno-miR-505 66 84 CCUUUGGUCGUUCACA-ACUg ||:|||| | ||||| ||| GGGAACC--CCAGTGTCTGAa Cul9 rno-miR-18 85 92 ---AUAG-ACGUGAUCUA-----------------CGUGGAAU |:|| ||:: ||: ||||||| GGCUGUCAUGUGAGAGGGGAACCCCAGUGUCUGAAGCACCUUC Cul9 rno-miR-30c 93 100 CGACUCUCACAUCCU-----------------------ACAAAUGU |||||| :||| ||||||| UGUGAGAG---GGGAACCCCAGUGUCUGAAGCACCUUCUGUUUACU Cul9 rno-miR-30e 93 100 A--------------GGUCAGUUCCU---------ACAAAUGU ||||| || ||||||| UGUGAGAGGGGAACCCCAGUGUCUGAAGCACCUUCUGUUUACU Cul9 rno-miR-328 40 47 U----------------GCCU------UCCCGUCUCUCCCGGUC :||| :|||||| ||||||| GAGGGGCAGGAAACACCUGGAGCUGCCGGGGCAGC-AGGGCCAC Cul9 rno-miR-370 36 43 U-----------------UGGUCCAAGGUGGG---GUCGUCCG ||| || | || ||||||| GGGGGAGGGGCAGGAAACACCUGGAGCUGCCGGGGCAGCAGGG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cul9 RAID02440970 rno-miR-329-5p miRNA MIMAT0017031 Cul9 mRNA 316228 Prediction 0.1828