DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 288596 Trim50 acaACGUCGCGAAG-UACAAa ||| | |: || ||||| uucUGCUGGGUCUCAAUGUUu 2 18 59 79 [rn4:12:22455471-22455491:-] 0.4940 121 0 -10.84 -0.3129 MIMAT0004639 rno-miR-325-3p 288596 Trim50 aacuauccuccacgaGUUAUUu |||||| aacaucuauuaaaaaCAAUAAa 2 8 277 298 [rn4:12:22455252-22455273:-] 0.5323 120 6 -5.42 -0.4061 MIMAT0000561 rno-miR-327 288596 Trim50 ugggaGU-ACGGGGAGU-UCc || ||:|||||| || gcagaCACUGUCCCUCACAGa 2 15 230 250 [rn4:12:22455300-22455320:-] 0.5323 121 0 -18.14 -0.8585 MIMAT0003191 rno-miR-493 288596 Trim50 gaccguGUGUCAUCUGGAAGu ||| | :||||||| cuuuauCACUG-GGACCUUCa 2 16 257 276 [rn4:12:22455274-22455293:-] 0.5323 149 7 -18.49 -1.0271 MIMAT0005317 rno-miR-463 288596 Trim50 gaUGGGUUUAACCGCAGAUAGu :||| |||| ||||||| cuGCCC--AUUG--GUCUAUCu 2 21 17 34 [rn4:12:22455516-22455533:-] 0.4705 150 7 -20.34 -0.5837 MIMAT0005337 rno-miR-760-3p 288596 Trim50 agggGUGUCUGGGUCUCGGc || :|: ||||||| auagCA-GGGGACAGAGCCu 2 17 127 145 [rn4:12:22455405-22455423:-] 0.4951 142 7 -18.35 -0.2820 MIMAT0012832 rno-miR-568 288596 Trim50 cacACAUAUGUAAAUAU-GUa || | ||||||||| || cccUGGA-ACAUUUAUAGCAg 2 18 114 133 [rn4:12:22455417-22455436:-] 0.4951 127 0 -8.42 -0.2093 MIMAT0012833 rno-miR-582 288596 Trim50 ucAUUGACCAACU-UGUUGACAu || | | | | ||||||| cuUACCAGCUCCACUCAACUGUg 2 21 184 206 [rn4:12:22455344-22455366:-] 0.5142 143 7 -11.92 -0.2173 MIMAT0012849 rno-miR-295 288596 Trim50 cuucacacgggGUGUAAACUca :| |||||| auuaaaaacaaUAAAUUUGAca 3 12 284 305 [rn4:12:22455245-22455266:-] 0.5323 123 0 -5.22 -0.3302 MIMAT0000553 rno-miR-324-5p 288596 Trim50 ugugguuacgGGAUCCCC-UACGc |||||||| |||| ucccucaccaCCUAGGGGUAUGCa 2 14 147 170 [rn4:12:22455380-22455403:-] 0.4961 129 0 -28.50 -0.2284 MIMAT0000562 rno-let-7d 288596 Trim50 uugAUACGUUGGAUGAUGGAGa |||||| |:||||||| gggUAUGCA---UGCUACCUCg 2 20 162 180 [rn4:12:22455370-22455388:-] 0.4961 159 7 -19.73 -0.1716 MIMAT0000596 rno-miR-346 288596 Trim50 ucuccGUCCGUGAGUCCGUCUGu || ||| :||||||| ccuucCA-GCA-GAGGGCAGACa 2 19 216 236 [rn4:12:22455314-22455334:-] 0.5323 142 7 -20.09 -0.4112 MIMAT0000615 rno-miR-101b 288596 Trim50 aaguCGAUAGUGUCAUGACAu || :|| ::||||||| ----GCCGUCCUGGUACUGUc 2 18 1 17 [rn4:12:22455533-22455549:-] 0.4470 157 7 -14.61 -0.7487 MIMAT0000774 rno-let-7a 288596 Trim50 uugAUAUGUUGGAUGAUGGAGu |||:|| |:||||||| gggUAUGCA---UGCUACCUCg 2 20 162 180 [rn4:12:22455370-22455388:-] 0.4961 155 7 -20.12 -0.1749 MIMAT0000775 rno-let-7b 288596 Trim50 uugguguguUGGAUGAUGGAGu :| |:||||||| uagggguauGCAUGCUACCUCg 2 14 159 180 [rn4:12:22455370-22455391:-] 0.4961 149 7 -18.21 -0.1766 MIMAT0000776 rno-let-7c 288596 Trim50 uuggUAUGUUGGAUGAUGGAGu :||: :| |:||||||| agggGUAU-GCAUGCUACCUCg 2 19 160 180 [rn4:12:22455370-22455390:-] 0.4961 152 7 -21.02 -0.1749 MIMAT0000777 rno-let-7e 288596 Trim50 uugAUAUGUUGGAGGAUGGAGu |||:|| | ||||||| gggUAUGCA---UGCUACCUCg 2 20 162 180 [rn4:12:22455370-22455388:-] 0.4961 151 7 -18.04 -0.1749 MIMAT0000778 rno-let-7f 288596 Trim50 uugAUAUGUUAGAUGAUGGAGu |||:|| |:||||||| gggUAUGCA---UGCUACCUCg 2 20 162 180 [rn4:12:22455370-22455388:-] 0.4961 155 7 -20.12 -0.1749 MIMAT0000779 rno-let-7i 288596 Trim50 uugUCGUGUUUGAUGAUGGAGu :|:|:: | |:||||||| aggGGUAUGCA-UGCUACCUCg 2 20 160 180 [rn4:12:22455370-22455390:-] 0.4961 153 7 -19.74 -0.1766 MIMAT0000787 rno-miR-18a 288596 Trim50 gaUAGACGU--GAUCUA-CGUGGAAu :| |||| ||| | ||||||| ggGUAUGCAUGCUACCUCGCACCUUa 2 22 162 187 [rn4:12:22455363-22455388:-] 0.4961 155 7 -16.55 -0.2494 MIMAT0000819 rno-miR-98 288596 Trim50 uugUUAUGUUGAAUGAUGGAGu ::||: :| |:||||||| aggGGUAU-GCAUGCUACCUCg 2 20 160 180 [rn4:12:22455370-22455390:-] 0.4961 153 7 -18.21 -0.1749 MIMAT0000823 rno-miR-101a 288596 Trim50 aagucaaUAGUGUCAUGACAu :|| ::||||||| ----gccGUCCUGGUACUGUc 2 15 1 17 [rn4:12:22455533-22455549:-] 0.4470 150 7 -13.30 -0.7524 MIMAT0003176 rno-miR-539 288596 Trim50 ugugugguuccuauuAAAGAGg |||||| auaaauuugacaucuUUUCUCa 2 8 294 315 [rn4:12:22455235-22455256:-] 0.5236 120 6 -9.72 -0.2627

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101513 Trim50 Rattus norvegicus 288596

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim50 RAID00362270 rno-let-7b-5p miRNA MIMAT0000775 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID00392967 rno-miR-101a-3p miRNA MIMAT0000823 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID00531368 rno-miR-98-5p miRNA MIMAT0000819 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID00560466 rno-let-7d-5p miRNA MIMAT0000562 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID00801384 rno-let-7f-5p miRNA MIMAT0000778 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID00846372 rno-miR-18a-5p miRNA MIMAT0000787 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID01150888 rno-miR-324-5p miRNA MIMAT0000553 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID01459390 rno-let-7a-5p miRNA MIMAT0000774 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID01548429 rno-miR-346 miRNA MIMAT0000596 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID01873568 rno-let-7e-5p miRNA MIMAT0000777 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID02005112 rno-miR-539-5p miRNA MIMAT0003176 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID02261992 rno-miR-101b-3p miRNA MIMAT0000615 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID02843679 rno-let-7i-5p miRNA MIMAT0000779 Trim50 mRNA 288596 Prediction 0.1828 Trim50 RAID03374216 rno-let-7c-5p miRNA MIMAT0000776 Trim50 mRNA 288596 Prediction 0.1828