DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 294289 Zbtb9 acaacgucgcgaAGUACAAa ||||||| agauuauauaugUCAUGUUg 2 9 100 119 [rn4:20:5214128-5214147:+] 0.5327 140 7 -6.56 -0.3490 MIMAT0000591 rno-miR-343 294289 Zbtb9 agACCCGUGUGCCUCCCUCu || | | :: ||||||| caUGAGGAGGU-GAGGGAGc 2 19 311 329 [rn4:20:5214339-5214357:+] 0.5327 144 7 -17.25 -0.1389 MIMAT0004723 rno-miR-34c* 294289 Zbtb9 ggacCGAC-ACACCAAUCACUAa | || | || ||||||| uaccGAUGCUCUG--UAGUGAUu 2 19 2 22 [rn4:20:5214030-5214050:+] 0.6186 142 7 -14.81 -0.6637 MIMAT0004743 rno-miR-300-5p 294289 Zbtb9 ugUUUCCUAUUG--GAGAGAAGUu |:||| ::: |||||||| gcAGAGGCAGGUGGAUCUCUUCAa 2 21 736 759 [rn4:20:5214764-5214787:+] 0.5050 147 7 -22.61 -0.4357 MIMAT0003113 rno-miR-489 294289 Zbtb9 cgacggUAUAUACACUACAGUAa || ||| | ||||||| caagagAU-UAUAU-AUGUCAUg 2 18 96 116 [rn4:20:5214124-5214144:+] 0.5327 149 7 -11.74 -0.5303 MIMAT0003124 rno-miR-412 294289 Zbtb9 ugCCGAUC-ACCUGG--UCCACUUCa || ||| | || : |||||||| agGGGUAGAUAGAAUGGAGGUGAAGg 2 22 1121 1146 [rn4:20:5215149-5215174:+] 0.6090 155 7 -19.58 -0.6848 MIMAT0003209 rno-miR-363* 294289 Zbtb9 uuuaACGUAGCACUAGGUGGGc ||| : | ||||||| augcUGCUCUCUUUUCCACCCc 2 19 1062 1083 [rn4:20:5215090-5215111:+] 0.6090 146 7 -15.34 -0.2326 MIMAT0005278 rno-miR-466b 294289 Zbtb9 guaCCUGUAUGUGUGUGUGUAu ||:: |: || ||||||| ucaGGGU-UGAACCCACACAUg 2 20 1009 1029 [rn4:20:5215037-5215057:+] 0.6090 153 7 -17.67 -0.1025 MIMAT0005278 rno-miR-466b 294289 Zbtb9 guaCCUGUAU-GUGUGUGUGUAu | | :|: | ::||||||| gaaGCAAGUGUCCUGCACACAUu 2 20 694 716 [rn4:20:5214722-5214744:+] 0.5050 146 7 -12.58 -0.3199 MIMAT0005278 rno-miR-466b 294289 Zbtb9 guaccUGUAUGU--GUGU-GUGUAu |||| :| |||| ||||| ugcacACAUUUAAUCACAGCACAUg 2 18 707 731 [rn4:20:5214735-5214759:+] 0.5050 124 0 -14.88 -0.1399 MIMAT0005280 rno-miR-743b 294289 Zbtb9 agauaagucauaccACAGAAAg ||||||| agaggccuucaccuUGUCUUUc 2 9 888 909 [rn4:20:5214916-5214937:+] 0.6090 140 7 -12.35 -0.5185 MIMAT0005281 rno-miR-871 294289 Zbtb9 acACUGGCCGUGGUUAGAC-UUAu ||:|: || | ||||| ||| ggUGGCUCACAACCAUCUGUAAUg 2 22 589 612 [rn4:20:5214617-5214640:+] 0.5000 129 0 -19.92 -0.1348 MIMAT0005286 rno-miR-878 294289 Zbtb9 agaugggucAUACCACAGUACg ||| ||||||| aagagauuaUAU-AUGUCAUGu 2 14 97 117 [rn4:20:5214125-5214145:+] 0.5327 143 7 -10.46 -0.8243 MIMAT0005301 rno-miR-188 294289 Zbtb9 gggaGGUGGUACGUU-CCCUAc |||:| ||:|| ||||| acaaCCAUC-UGUAAUGGGAUc 2 18 597 617 [rn4:20:5214625-5214645:+] 0.5000 127 0 -21.06 -0.1024 MIMAT0005313 rno-miR-423 294289 Zbtb9 ugACUCCCCGGA---GUC-UG-GCUCGa ||||||| | :|| || ||||| cuUGAGGGGGAUAAAUAGUACUCGAGCa 2 22 799 826 [rn4:20:5214827-5214854:+] 0.5570 123 0 -26.00 -0.9585 MIMAT0005322 rno-miR-532-5p 294289 Zbtb9 ugUCAGGAUGUGAGUUCC-GUAc ||||||::| |||| ||| gaAGUCCUGUA-GGAAGGUCAUg 2 21 164 185 [rn4:20:5214192-5214213:+] 0.5327 126 0 -22.01 -0.3425 MIMAT0005327 rno-miR-672 294289 Zbtb9 aguGUGUGUCA-UGUG-GUUGG-AGu |:||::|| :| | ||||| || agcCGCAUGGUGGCUCACAACCAUCu 2 21 581 606 [rn4:20:5214609-5214634:+] 0.5000 122 0 -18.55 -0.1126 MIMAT0012825 rno-miR-105 294289 Zbtb9 uggUGUC-UGUAGACUCGUGAAc |:|| || || |||||||| uaaAUAGUAC-UC-GAGCACUUu 2 20 810 830 [rn4:20:5214838-5214858:+] 0.5570 154 7 -17.68 -0.3237 MIMAT0001619 rno-miR-322 294289 Zbtb9 agGUUUUGUACU-UAACGACGAc || :::: || ||||||| gcCACGGUGGGACCAUGCUGCUc 2 21 1048 1070 [rn4:20:5215076-5215098:+] 0.6090 143 7 -15.91 -0.2819 MIMAT0000562 rno-let-7d 294289 Zbtb9 uugaUACGUUGGAUGA-UGGAGa | | || ||:|| ||||| agugAAGGAA-CUGCUGACCUCa 2 19 230 251 [rn4:20:5214258-5214279:+] 0.5327 120 0 -14.92 -0.3114 MIMAT0000564 rno-miR-328 294289 Zbtb9 ugcCUUCCCGUC-UCUCC-CGGUc ||:| | | ||||| |||| gguGAGGAUCUGCAGAGGAGCCAc 2 20 1029 1052 [rn4:20:5215057-5215080:+] 0.6090 122 0 -20.73 -0.2557 MIMAT0000602 rno-miR-20a 294289 Zbtb9 gauggaCGUGAUAUUCGUGAAAu |:||| :|||||||| uaaauaGUACU-CGAGCACUUUa 2 18 810 831 [rn4:20:5214838-5214859:+] 0.5570 155 7 -17.57 -0.7871 MIMAT0000606 rno-miR-7a 294289 Zbtb9 uguuGUUUUAGUG-AUCA-GAAGGu | ::|||:: |:|| ||||| agucCUGGAUCGUGUGGUCCUUCCa 2 20 73 97 [rn4:20:5214101-5214125:+] 0.5327 122 0 -16.97 -0.3973 MIMAT0000608 rno-miR-351 294289 Zbtb9 aguccGAGUUUCCCGAGGAGUCCCu ||:|:||| :||||||| ccccaCUUAGAGG--AUCUCAGGGu 2 21 993 1015 [rn4:20:5215021-5215043:+] 0.6090 157 7 -27.44 -0.6666 MIMAT0000774 rno-let-7a 294289 Zbtb9 uugAUAUGUUGGAUGA-UGGAGu |: | :| ||:|| ||||| cagUGAAGGAACUGCUGACCUCa 2 20 229 251 [rn4:20:5214257-5214279:+] 0.5327 123 0 -16.04 -0.3167 MIMAT0000775 rno-let-7b 294289 Zbtb9 uuggugUGUUGGAUGA-UGGAGu | :| ||:|| ||||| cagugaAGGAACUGCUGACCUCa 2 17 229 251 [rn4:20:5214257-5214279:+] 0.5327 120 0 -16.04 -0.3167 MIMAT0000776 rno-let-7c 294289 Zbtb9 uugguaUGUUGGAUGA-UGGAGu | :| ||:|| ||||| cagugaAGGAACUGCUGACCUCa 2 17 229 251 [rn4:20:5214257-5214279:+] 0.5327 120 0 -16.04 -0.3167 MIMAT0000778 rno-let-7f 294289 Zbtb9 uugAUAUGUUAGAUGA-UGGAGu |: | :| ||:|| ||||| cagUGAAGGAACUGCUGACCUCa 2 20 229 251 [rn4:20:5214257-5214279:+] 0.5327 123 0 -16.17 -0.3193 MIMAT0000779 rno-let-7i 294289 Zbtb9 uuGUCG--UGUUUGAUGA-UGGAGu |||: | :||||:|| ||||| gcCAGUGAAGGAACUGCUGACCUCa 2 21 227 251 [rn4:20:5214255-5214279:+] 0.5327 131 0 -22.43 -0.3167 MIMAT0000784 rno-miR-15b 294289 Zbtb9 acaUUUGGUACUAC------ACGACGAu :|:||| |:|| ||||||| gagGAGCCACGGUGGGACCAUGCUGCUc 2 20 1043 1070 [rn4:20:5215071-5215098:+] 0.6090 146 7 -19.62 -0.2771 MIMAT0000785 rno-miR-16 294289 Zbtb9 gcgGUUAUAAAUGCACGACGAu |::|: | ||||||| ccaCGGUGGGACCAUGCUGCUc 2 20 1049 1070 [rn4:20:5215077-5215098:+] 0.6090 143 7 -15.86 -0.2844 MIMAT0000786 rno-miR-17-5p 294289 Zbtb9 gauggaCGUGACAUUCGUGAAAc |:||| :|||||||| uaaauaGUACU-CGAGCACUUUa 2 18 810 831 [rn4:20:5214838-5214859:+] 0.5570 155 7 -15.34 -0.7871 MIMAT0000787 rno-miR-18a 294289 Zbtb9 gauAGACGUGAUCUAC-GUGGAAu ||| ||| ||: | |||||| uuuUCU-CACCAGGAGACACCUUu 2 21 476 498 [rn4:20:5214504-5214526:+] 0.4878 130 6 -16.32 -0.2194 MIMAT0000796 rno-miR-26a 294289 Zbtb9 ucggauaggaccUAAUGAACUu | ||||||| uuaaaaaaaaaaAGUACUUGAa 2 11 669 690 [rn4:20:5214697-5214718:+] 0.5005 142 7 -9.65 -0.8859 MIMAT0000796 rno-miR-26a 294289 Zbtb9 ucGGAUAGGACCUAAUGA-ACUu | | || |:||||| ||| agCAUUUCACAGGUUACUCUGAa 2 21 840 862 [rn4:20:5214868-5214890:+] 0.6090 120 0 -14.57 -0.3914 MIMAT0000797 rno-miR-26b 294289 Zbtb9 uggauaggacUUAAUGAACUu || ||||||| uaaaaaaaaaAAGUACUUGAa 2 12 670 690 [rn4:20:5214698-5214718:+] 0.5005 147 7 -8.60 -0.8859 MIMAT0000817 rno-miR-93 294289 Zbtb9 gauggaCGUGCUUGUCGUGAAAc |:|| : |||||||| uaaauaGUACUCG-AGCACUUUa 2 18 810 831 [rn4:20:5214838-5214859:+] 0.5570 147 7 -12.59 -0.7943 MIMAT0000825 rno-miR-106b 294289 Zbtb9 uagaCGUGACAGUCGUGAAAu |:||| |||||||| aauaGUACU-CGAGCACUUUa 2 18 812 831 [rn4:20:5214840-5214859:+] 0.6090 151 7 -17.31 -0.8916 MIMAT0000829 rno-miR-125a-5p 294289 Zbtb9 aguguccAAUUUCCCAGAGUCCCu |||:||| |||||||| cccccacUUAGAGGAUCUCAGGGu 2 18 992 1015 [rn4:20:5215020-5215043:+] 0.6090 173 7 -26.87 -0.6629 MIMAT0004729 rno-miR-125a-3p 294289 Zbtb9 ccgagggUUCUUGGAGU-GGACa | |::||||| |||| cuuggggAUGGGCCUCACCCUGg 2 16 133 155 [rn4:20:5214161-5214183:+] 0.5327 123 0 -20.16 -0.5837 MIMAT0000830 rno-miR-125b-5p 294289 Zbtb9 aguGUUCAAUC-CC-AGAGUCCCu | | |||| || |||||||| cccCCACUUAGAGGAUCUCAGGGu 2 20 992 1015 [rn4:20:5215020-5215043:+] 0.6090 161 7 -24.43 -0.6778 MIMAT0000842 rno-miR-136 294289 Zbtb9 agguaguaguUUUGU-UUACCUCa |:|:| ||||||| guagagggguAGAUAGAAUGGAGg 2 14 1117 1140 [rn4:20:5215145-5215168:+] 0.6090 148 7 -11.41 -0.6288 MIMAT0000870 rno-miR-195 294289 Zbtb9 cgGUUAUAAAGACACGACGAu |::|: | ||||||| caCGGUGGGACCAUGCUGCUc 2 20 1050 1070 [rn4:20:5215078-5215098:+] 0.6090 143 7 -14.94 -0.2844 MIMAT0000876 rno-miR-203 294289 Zbtb9 gaucaccagGAUUUGUAAAGUg ||:|:||||||| uuuagcaaaCUGAGCAUUUCAc 2 14 828 849 [rn4:20:5214856-5214877:+] 0.6090 157 7 -20.31 -0.3373 MIMAT0000886 rno-miR-216a 294289 Zbtb9 agUGUCAACGGUCGACUC-UAAu || | || | ||||| ||| gcACUUUAGCAAACUGAGCAUUu 2 21 824 846 [rn4:20:5214852-5214874:+] 0.6090 124 0 -13.36 -0.4789 MIMAT0000888 rno-miR-218 294289 Zbtb9 uguaccAAUCUAGU-UCGUGUu ||| |||| |||||| acacauUUA-AUCACAGCACAu 2 16 710 730 [rn4:20:5214738-5214758:+] 0.5050 125 6 -12.30 -0.2034 MIMAT0000895 rno-miR-291a-3p 294289 Zbtb9 ccgUGUGUUUCA--CCUUCGUGAAa |:| | ||| :||||||| gggAUAAAUAGUACUCGAGCACUUu 2 21 806 830 [rn4:20:5214834-5214858:+] 0.5570 147 7 -16.31 -0.3264 MIMAT0003114 rno-miR-383 294289 Zbtb9 ucggUGUCAGUG-GAAGACUAGa | :||||: ||||||||| uaggAAGGUCAUGCUUCUGAUCa 2 19 173 195 [rn4:20:5214201-5214223:+] 0.5327 165 7 -21.17 -0.2646 MIMAT0003208 rno-miR-374 294289 Zbtb9 gugaaucguccaacaUAAUAUa |||||| ugaaggggaauuuaaAUUAUAa 2 8 1141 1162 [rn4:20:5215169-5215190:+] 0.6090 120 6 -3.55 -0.1650 MIMAT0003211 rno-miR-20b-5p 294289 Zbtb9 uggaCGUGAUACUCGUGAAAc |:||| ||||||||| aauaGUACU-CGAGCACUUUa 2 18 812 831 [rn4:20:5214840-5214859:+] 0.6090 159 7 -17.49 -0.8916 MIMAT0003383 rno-miR-497 294289 Zbtb9 augUUUGGUGUCAC------ACGACGAc :|:||||:||| ||||||| gagGAGCCACGGUGGGACCAUGCUGCUc 2 20 1043 1070 [rn4:20:5215071-5215098:+] 0.6090 154 7 -26.42 -0.2795 MIMAT0005310 rno-miR-384-3p 294289 Zbtb9 uaACACUUGUUAAAGAUCCUua ||| |:::|||||||||| ucUGU-AGUGAUUUCUAGGAca 3 21 11 31 [rn4:20:5214039-5214059:+] 0.6186 154 0 -17.11 -0.1254 MIMAT0005310 rno-miR-384-3p 294289 Zbtb9 uaacacuuguuaaaGAUCCUUa ||||||| gagcuggucuccaaCUAGGAAa 2 9 326 347 [rn4:20:5214354-5214375:+] 0.5327 140 7 -12.71 -0.8945 MIMAT0005311 rno-miR-410 294289 Zbtb9 ugucCGGUAGACACAAUAUAa | | || | ||||||| ugcuGACCUCAG-GUUAUAUu 2 18 241 260 [rn4:20:5214269-5214288:+] 0.5327 147 7 -10.33 -0.3182 MIMAT0005339 rno-miR-873 294289 Zbtb9 uccucugagUGUUCA-AGGACg :||||| ||||| gaacaugaaGCAAGUGUCCUGc 2 13 688 709 [rn4:20:5214716-5214737:+] 0.5050 120 0 -17.71 -0.3715

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116326 Zbtb9 Rattus norvegicus 294289

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Zbtb9 RAID00003641 rno-miR-125b-5p miRNA MIMAT0000830 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID00106151 rno-miR-16-5p miRNA MIMAT0000785 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID00180412 rno-miR-105 miRNA MIMAT0012825 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00339491 rno-let-7c-5p miRNA MIMAT0000776 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00409742 rno-miR-410-3p miRNA MIMAT0005311 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00428304 rno-miR-15b-5p miRNA MIMAT0000784 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID00572336 rno-miR-26a-5p miRNA MIMAT0000796 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00640400 rno-miR-216a-5p miRNA MIMAT0000886 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00755371 rno-miR-1306-5p miRNA MIMAT0024851 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00861824 rno-miR-497-5p miRNA MIMAT0003383 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID00885433 rno-miR-203a-3p miRNA MIMAT0000876 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID00915054 rno-miR-18a-5p miRNA MIMAT0000787 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID01206257 rno-let-7f-5p miRNA MIMAT0000778 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID01362275 rno-miR-351-5p miRNA MIMAT0000608 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID01769426 rno-miR-20a-5p miRNA MIMAT0000602 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02070009 rno-let-7b-5p miRNA MIMAT0000775 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID02141554 rno-miR-3561-3p miRNA MIMAT0017831 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID02208888 rno-miR-93-5p miRNA MIMAT0000817 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02239509 rno-miR-20b-5p miRNA MIMAT0003211 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02269926 rno-miR-363-5p miRNA MIMAT0003209 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID02424947 rno-miR-17-5p miRNA MIMAT0000786 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02596216 rno-miR-195-5p miRNA MIMAT0000870 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02652942 rno-miR-291a-3p miRNA MIMAT0000895 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02715834 rno-miR-384-3p miRNA MIMAT0005310 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID02806026 rno-miR-125a-5p miRNA MIMAT0000829 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID02908071 rno-miR-26b-5p miRNA MIMAT0000797 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID02941739 rno-miR-15a-5p miRNA MIMAT0035728 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03237729 rno-miR-328a-3p miRNA MIMAT0000564 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03348166 rno-miR-873-5p miRNA MIMAT0005339 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03450506 rno-miR-136-5p miRNA MIMAT0000842 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03549734 rno-miR-322-5p miRNA MIMAT0001619 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID03741682 rno-miR-106b-5p miRNA MIMAT0000825 Zbtb9 mRNA 294289 Prediction 0.2202 Zbtb9 RAID03764008 rno-miR-7a-5p miRNA MIMAT0000606 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03834447 rno-let-7a-5p miRNA MIMAT0000774 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03870759 rno-miR-218a-5p miRNA MIMAT0000888 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03876678 rno-miR-125a-3p miRNA MIMAT0004729 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03935265 rno-let-7d-5p miRNA MIMAT0000562 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03971157 rno-miR-383-5p miRNA MIMAT0003114 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID03983558 rno-let-7i-5p miRNA MIMAT0000779 Zbtb9 mRNA 294289 Prediction 0.1828 Zbtb9 RAID04003085 rno-miR-374-5p miRNA MIMAT0003208 Zbtb9 mRNA 294289 Prediction 0.1828