DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 65274 Nup62 agaGACGUCCGGGACA-CGAAACg :||:||| |: | |||||| uugUUGUAGGGCUGCUGGCUUUGg 2 21 33 56 [rn4:1:95302921-95302944:+] 0.5035 128 6 -22.87 -0.1109 MIMAT0000577 rno-miR-337 65274 Nup62 uuUCCGUAGUAUAUCCUC-GACUu || || || | :|||| |||| agAGUCACCA-A-GGGAGACUGAg 2 22 377 398 [rn4:1:95303265-95303286:+] 0.5165 121 0 -16.40 -0.1990 MIMAT0004654 rno-miR-344-5p 65274 Nup62 ggaccuUAGAUCGGUCCUCGGACu || | :| ||||||| uaacccAUGUCCUCCAGAGCCUGu 2 19 341 364 [rn4:1:95303229-95303252:+] 0.5165 146 7 -21.28 -0.2902 MIMAT0000607 rno-miR-7a* 65274 Nup62 uaCCGUCUGACACUAAACAACa ||:| || | ||||||| ggGGUA-CCUCU--UUUGUUGu 2 21 21 39 [rn4:1:95302909-95302927:+] 0.5035 143 7 -12.01 -0.1837 MIMAT0004714 rno-miR-26b* 65274 Nup62 cuCGGUUCAUUACCUCUUGUCc | :|: | | |||||||| cuGAUAGUUCUUUGAGAACAGa 2 21 469 490 [rn4:1:95303357-95303378:+] 0.5213 152 7 -12.94 -0.3427 MIMAT0004726 rno-miR-101a* 65274 Nup62 cgUAGUCGUGACACUAUU-GACu :||| : ||| |||| ||| auGUCAUGGAUGUAAUAACCUGu 2 21 129 151 [rn4:1:95303017-95303039:+] 0.5165 124 0 -10.45 -0.3752 MIMAT0004730 rno-miR-125b-3p 65274 Nup62 ucgaggguuCUCGGAUUG-GGCa ||||:|||| ||| agggagacuGAGCUUAACACCGg 2 14 387 409 [rn4:1:95303275-95303297:+] 0.5165 125 0 -19.10 -0.5050 MIMAT0000893 rno-miR-290 65274 Nup62 uuuuucacggGGGUAUCA-AACUc ::|||||| |||| aaaccuuagaUUCAUAGUGUUGAa 2 14 526 549 [rn4:1:95303414-95303437:+] 0.5261 121 0 -11.81 -0.6711 MIMAT0003113 rno-miR-489 65274 Nup62 cgACGGUAUAUACACUACAGUAa ||| | | : ||||||||| uuUGCGA-AGGCAUGAUGUCAUg 2 22 115 136 [rn4:1:95303003-95303024:+] 0.5165 155 7 -14.94 -0.2191 MIMAT0004787 rno-miR-543 65274 Nup62 cgcuUUUUGUGCGCCCG-UUGAa |||: || |||| |||| auuuAAAGAACAAGGGCAAACUc 2 19 196 218 [rn4:1:95303084-95303106:+] 0.5165 126 0 -16.99 -0.3734 MIMAT0003380 rno-miR-505 65274 Nup62 ccUUUGG--UC---GU-UCACAACUg ||||| || || |||||||| ucAAACCUUAGAUUCAUAGUGUUGAa 2 19 524 549 [rn4:1:95303412-95303437:+] 0.5261 151 7 -14.93 -0.9970 MIMAT0005280 rno-miR-743b 65274 Nup62 agAUAAGUCAUACCAC-AGAAAg |:|| || | || ||||| auUGUUGAGAAAAAUGCUCUUUg 2 21 66 88 [rn4:1:95302954-95302976:+] 0.5035 120 0 -8.16 -0.7261 MIMAT0005281 rno-miR-871 65274 Nup62 acACUGGC-CGUGGUU--AGACUUAu ||:|:| | |:: : ||||||| agUGGCUGCGGAUUUGCUUCUGAAUg 2 22 490 515 [rn4:1:95303378-95303403:+] 0.5261 147 7 -22.88 -0.1684 MIMAT0005283 rno-miR-872* 65274 Nup62 ucCUCCGA-UGACG-UUAUCAAGu |:| || ||||| :||||||| caGGGACUGACUGCUGAUAGUUCu 2 21 456 479 [rn4:1:95303344-95303367:+] 0.5165 166 7 -22.34 -0.2485 MIMAT0005286 rno-miR-878 65274 Nup62 agaugggUCAUACCACAGUACg :| ||| ||||||| uugcgaaGGCAUGAUGUCAUGg 2 16 116 137 [rn4:1:95303004-95303025:+] 0.5165 155 7 -16.20 -0.5649 MIMAT0005319 rno-miR-484 65274 Nup62 uagcccuccccuGACUCGGACu | ||||||| acccauguccucCAGAGCCUGu 2 11 343 364 [rn4:1:95303231-95303252:+] 0.5165 142 7 -13.69 -0.2952 MIMAT0005322 rno-miR-532-5p 65274 Nup62 ugUCAGGAUGUGAGUUCCGUAc ||| | ::| ||||||| gaAGUGGUUUGC-GAAGGCAUg 2 21 108 128 [rn4:1:95302996-95303016:+] 0.5165 146 7 -17.75 -0.1468 MIMAT0005337 rno-miR-760-3p 65274 Nup62 agGGGUGUCUG-GGUCUCGGc ||||:: | |||||||| aaCCCAUGUCCUCCAGAGCCu 2 19 342 362 [rn4:1:95303230-95303250:+] 0.5165 157 7 -25.40 -0.2384 MIMAT0012833 rno-miR-582 65274 Nup62 ucauugaccaacuUGUUGACAu |||||||| uagccacuccaauACAACUGUg 2 10 225 246 [rn4:1:95303113-95303134:+] 0.5165 145 7 -13.88 -0.5347 MIMAT0012850 rno-miR-465 65274 Nup62 gugUGGUCGUGGCAAGAUUUAu | || ::|: |||||||| caaAACAUUGCUUUUCUAAAUa 2 20 616 637 [rn4:1:95303504-95303525:+] 0.5261 159 7 -13.14 -1.1017 MIMAT0001619 rno-miR-322 65274 Nup62 agguuUUGUACUUAAC-GACGAc ::|| |:| || ||||| ucuguGGCAGGGACUGACUGCUg 2 18 449 471 [rn4:1:95303337-95303359:+] 0.5165 121 0 -17.33 -0.3506 MIMAT0000552 rno-miR-301a 65274 Nup62 cgaAACUGUUAUGAUAACGUGAc || ||| : | ||||||| agcUUAACACCGGU-UUGCACUg 2 21 397 418 [rn4:1:95303285-95303306:+] 0.5165 150 7 -16.85 -0.1778 MIMAT0000579 rno-miR-148b-3p 65274 Nup62 uguUUCAAGACACUACGUGACu || | || ||||||| cuuAACACCGGU-UUGCACUGg 2 20 399 419 [rn4:1:95303287-95303307:+] 0.5165 141 7 -13.32 -0.2214 MIMAT0000788 rno-miR-19b 65274 Nup62 agUCAAAACGUACCUAAACGUGu || || || |:||||||| ugAGCUUAACACCGGUUUGCACu 2 22 395 417 [rn4:1:95303283-95303305:+] 0.5165 161 7 -13.40 -0.1208 MIMAT0000789 rno-miR-19a 65274 Nup62 agUCAAAACGUAUCUAAACGUGu || || || |:||||||| ugAGCUUAACACCGGUUUGCACu 2 22 395 417 [rn4:1:95303283-95303305:+] 0.5165 161 7 -13.42 -0.1208 MIMAT0000798 rno-miR-27b 65274 Nup62 cgucuugaAUCGGUGACACUu || | ||||||| cacuccaaUA-CAACUGUGAc 2 14 229 248 [rn4:1:95303117-95303136:+] 0.5165 143 7 -9.28 -0.3715 MIMAT0000799 rno-miR-27a 65274 Nup62 cgccuugaAUCGGUGACACUu || | ||||||| cacuccaaUA-CAACUGUGAc 2 14 229 248 [rn4:1:95303117-95303136:+] 0.5165 143 7 -9.46 -0.3715 MIMAT0004729 rno-miR-125a-3p 65274 Nup62 ccgagGGUUCUUGGAGUGGACa ||||||| |||||||| guuggCCAAGAAACUCACCUGg 2 18 273 294 [rn4:1:95303161-95303182:+] 0.5165 177 7 -27.23 -0.1248 MIMAT0000836 rno-miR-130a 65274 Nup62 uacgggaaAAUUGU-----AACGUGAc |||||| ||||||| gacugagcUUAACACCGGUUUGCACUg 2 15 392 418 [rn4:1:95303280-95303306:+] 0.5165 145 7 -16.17 -0.1966 MIMAT0000837 rno-miR-130b 65274 Nup62 uacgGGAAAGUAGU--AACGUGAc |:| || |: ||||||| ugagCUUAACACCGGUUUGCACUg 2 19 395 418 [rn4:1:95303283-95303306:+] 0.5165 145 7 -16.32 -0.1966 MIMAT0000842 rno-miR-136 65274 Nup62 agguaguAGUUUUGUUUACCUCa ||| :||||||| aagaaacUCACCUGGAAUGGAGa 2 17 280 302 [rn4:1:95303168-95303190:+] 0.5165 144 7 -11.65 -0.2141 MIMAT0000845 rno-miR-139-5p 65274 Nup62 gaccucUGUGCACGUGACAUCu |||| | :||||||| uucuccACAC-UCUACUGUAGc 2 17 579 599 [rn4:1:95303467-95303487:+] 0.5261 154 7 -14.56 -0.3761 MIMAT0000854 rno-miR-152 65274 Nup62 ggUUCAAGACAGUACGUGACu || | ||: ||||||| uuAACACCGGUU-UGCACUGg 2 20 400 419 [rn4:1:95303288-95303307:+] 0.5165 145 7 -15.81 -0.2062 MIMAT0000856 rno-miR-154 65274 Nup62 gcUUCCGU-UGUGC-CUAUUGGAu | | || : |:| ||||||| ugAUGUCAUGGAUGUAAUAACCUg 2 21 127 150 [rn4:1:95303015-95303038:+] 0.5165 142 7 -16.49 -0.4580 MIMAT0000857 rno-miR-181c 65274 Nup62 ugaguggcuguccaACUUACAa ||||||| ugcggauuugcuucUGAAUGUc 2 9 496 517 [rn4:1:95303384-95303405:+] 0.5261 140 7 -10.33 -0.2131 MIMAT0000858 rno-miR-181a 65274 Nup62 ugaGUGGCU-GUCGCA-ACUUACAa ::| || : || | ||||||| ggcUGCGGAUUUGCUUCUGAAUGUc 2 21 493 517 [rn4:1:95303381-95303405:+] 0.5261 146 7 -13.61 -0.2131 MIMAT0000859 rno-miR-181b 65274 Nup62 ugGGUGGCU-GUCG-UUACUUACAa |::| || : || ||||||| ggCUGCGGAUUUGCUUCUGAAUGUc 2 22 493 517 [rn4:1:95303381-95303405:+] 0.5261 143 7 -15.42 -0.2131 MIMAT0000871 rno-miR-196a 65274 Nup62 ggguuguuGUACUUUGA-UGGAu || |||||| |||| auguuggcCAAGAAACUCACCUg 2 15 271 293 [rn4:1:95303159-95303181:+] 0.5165 126 0 -15.63 -0.2709 MIMAT0001082 rno-miR-196b 65274 Nup62 ggguuguuGUCCUUUGA-UGGAu || |||||| |||| auguuggcCAAGAAACUCACCUg 2 15 271 293 [rn4:1:95303159-95303181:+] 0.5165 126 0 -15.63 -0.2709 MIMAT0003176 rno-miR-539 65274 Nup62 ugugugguuccuAUUAAAGAGg | ||||||| gucuggucuauuUUAUUUCUCc 2 11 563 584 [rn4:1:95303451-95303472:+] 0.5261 142 7 -11.33 -0.8228 MIMAT0005299 rno-miR-181d 65274 Nup62 uggguggcuguuguuACUUACAa ||||||| cugcggauuugcuucUGAAUGUc 2 9 495 517 [rn4:1:95303383-95303405:+] 0.5261 140 7 -12.22 -0.2131 MIMAT0005303 rno-miR-196c 65274 Nup62 ggguuguuGUGCUUUGA-UGGAu || |||||| |||| auguuggcCAAGAAACUCACCUg 2 15 271 293 [rn4:1:95303159-95303181:+] 0.5165 126 0 -15.63 -0.2709 MIMAT0005304 rno-miR-301b 65274 Nup62 cgaaacuGUUAUGGU--AACGUGAc :|| |||: ||||||| cugagcuUAACACCGGUUUGCACUg 2 17 394 418 [rn4:1:95303282-95303306:+] 0.5165 151 7 -19.44 -0.1912

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G073411 Nup62 Rattus norvegicus 65274

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nup62 RAID00013755 rno-miR-19b-3p miRNA MIMAT0000788 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID00063251 rno-miR-539-5p miRNA MIMAT0003176 Nup62 mRNA 65274 Prediction 0.2202 Nup62 RAID00510016 rno-miR-154-5p miRNA MIMAT0000856 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID00519038 rno-miR-148b-3p miRNA MIMAT0000579 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID00721481 rno-miR-125a-3p miRNA MIMAT0004729 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID00742145 rno-miR-196b-5p miRNA MIMAT0001082 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID00910227 rno-miR-181a-5p miRNA MIMAT0000858 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01084472 rno-miR-322-5p miRNA MIMAT0001619 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01090833 rno-miR-181c-5p miRNA MIMAT0000857 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01126780 rno-miR-27b-3p miRNA MIMAT0000798 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01177061 rno-miR-3556a miRNA MIMAT0017821 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01232188 rno-miR-196c-5p miRNA MIMAT0005303 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01233143 rno-miR-181b-5p miRNA MIMAT0000859 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01428519 rno-miR-465-5p miRNA MIMAT0012850 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01766993 rno-miR-136-5p miRNA MIMAT0000842 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01799813 rno-miR-152-3p miRNA MIMAT0000854 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID01904468 rno-miR-130a-3p miRNA MIMAT0000836 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID02037632 rno-miR-301a-3p miRNA MIMAT0000552 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID02235546 rno-miR-130b-3p miRNA MIMAT0000837 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID02671621 rno-miR-19a-3p miRNA MIMAT0000789 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID02766562 rno-miR-139-5p miRNA MIMAT0000845 Nup62 mRNA 65274 Prediction 0.2202 Nup62 RAID03241467 rno-miR-181d-5p miRNA MIMAT0005299 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID03359690 rno-miR-196a-5p miRNA MIMAT0000871 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID03472201 rno-miR-3569 miRNA MIMAT0017849 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID03552058 rno-miR-301b-3p miRNA MIMAT0005304 Nup62 mRNA 65274 Prediction 0.1828 Nup62 RAID03808013 rno-miR-27a-3p miRNA MIMAT0000799 Nup62 mRNA 65274 Prediction 0.1828