DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 60465 Cttn acaacgucgcgaAGUACAAa ||||||| aaugucugaugaUCAUGUUc 2 9 192 211 [rn4:1:204866801-204866820:-] 0.6364 140 7 -10.34 -0.4967 MIMAT0000568 rno-miR-330* 60465 Cttn agagACGUCCGGGACA-CGAAACg | ||||: :| | |||||| gccaUCCAGGUGUUUUAGCUUUGc 2 20 238 261 [rn4:1:204866751-204866774:-] 0.6364 127 6 -18.34 -0.4266 MIMAT0000574 rno-miR-140* 60465 Cttn ggcaccaagauggGACACCAu ||||||| uuugccaagccgaCUGUGGUa 2 9 257 277 [rn4:1:204866735-204866755:-] 0.6364 140 7 -20.19 -0.4976 MIMAT0005445 rno-miR-29b-1* 60465 Cttn uuUAGAUUUGGUGGUAUACUUu :|: :: :: |:||||||| agGUUGGGUUUUCUAUAUGAAu 2 21 1142 1163 [rn4:1:204865849-204865870:-] 0.5343 148 7 -13.53 -0.5591 MIMAT0004726 rno-miR-101a* 60465 Cttn cguaGUCGU-GACACUA-UUGACu ||||| | |||| ||||| ucccCAGCAUCCUUGAUCAACUGu 2 19 939 962 [rn4:1:204866050-204866073:-] 0.5123 129 0 -17.45 -0.1052 MIMAT0004728 rno-miR-124* 60465 Cttn uaGUUCCAGGCGACACUUGUGc :|| || || ||||||| auUAAUGU-GGC--UGAACACa 2 21 890 908 [rn4:1:204866104-204866122:-] 0.4904 143 7 -10.31 -0.2741 MIMAT0003113 rno-miR-489 60465 Cttn cgACGGUAUAUACACUAC-AGUAa |||:| ||:| ||||| |||| uuUGCUA-AUGUCUGAUGAUCAUg 2 22 186 208 [rn4:1:204866804-204866826:-] 0.6364 139 0 -16.85 -0.6773 MIMAT0003115 rno-miR-207 60465 Cttn uuCCCU-CCUCUCGGUCC-UCUUCg |||| || |:: || ||||| cuGGGAUCCAGUGUUUGGAAGAAGa 2 22 413 437 [rn4:1:204866575-204866599:-] 0.4519 120 0 -17.47 -0.1566 MIMAT0003380 rno-miR-505 60465 Cttn ccuuUGGUCGUUCACAACUg ::| ||: ||||||| ucgcGUCUGCGUGUGUUGAa 2 17 48 67 [rn4:1:204866945-204866964:-] 0.4502 152 7 -15.56 -0.3193 MIMAT0005286 rno-miR-878 60465 Cttn agAUGGGU-CAUACCAC-AGUACg |:|: | || || || ||||| uuUGCUAAUGUCUGAUGAUCAUGu 2 21 186 209 [rn4:1:204866803-204866826:-] 0.6364 123 0 -13.05 -0.6348 MIMAT0005287 rno-miR-879 60465 Cttn ccGAAUCUCGAUAUUCGGAGa ||| ||: ||||||| acCUUCUCCCUGCAAGCCUCc 2 20 801 821 [rn4:1:204866191-204866211:-] 0.4904 151 7 -14.76 -0.1089 MIMAT0005330 rno-miR-674-3p 60465 Cttn aacaaGACUCUACCCUCGACAc ||| | ||||||||| gcuccCUGUG--GGGAGCUGUg 2 18 830 849 [rn4:1:204866163-204866182:-] 0.4904 154 7 -25.54 -0.1095 MIMAT0005330 rno-miR-674-3p 60465 Cttn aaCAAGAC--UCUACCCUCGACAc | || | ||| | ||||||| cuGCUCAGCCAGA-GUGAGCUGUg 2 21 749 771 [rn4:1:204866241-204866263:-] 0.4904 149 7 -17.66 -0.1266 MIMAT0005337 rno-miR-760-3p 60465 Cttn aggggugucUGGGUCUCGGc |||||||||| --gguggccACCCAGAGCCu 2 12 1 18 [rn4:1:204866994-204867011:-] 0.5792 155 7 -21.24 -0.1989 MIMAT0012833 rno-miR-582 60465 Cttn ucaUUG-ACCAACUUGUUGACAu |:| | |||| ||||||| cccAGCAUCCUUGAUCAACUGUc 2 20 941 963 [rn4:1:204866049-204866071:-] 0.5123 158 7 -12.02 -0.2984 MIMAT0012853 rno-miR-761 60465 Cttn acACAGUCAAAGUGGGACGACg || | ||: :||||||| guUGACCCCUUUCUCCUGCUGc 2 21 583 604 [rn4:1:204866408-204866429:-] 0.4519 152 7 -19.51 -0.1782 MIMAT0004650 rno-miR-340-5p 60465 Cttn uuagucaGAGUAAC-GAAAUAUu | :|||| ||||||| gaauauaCAUAUUGCCUUUAUAu 2 16 120 142 [rn4:1:204866870-204866892:-] 0.6364 154 7 -9.56 -0.7403 MIMAT0000608 rno-miR-351 60465 Cttn aguccGAGUUUCCCGAGGAGUCCCu || :|: ||| ||||||| ugcucCUGGAGUGGCCACUCAGGGa 2 21 379 403 [rn4:1:204866609-204866633:-] 0.4519 160 7 -30.85 -0.1385 MIMAT0000810 rno-miR-31 60465 Cttn guCGAUACG--GUCGUA-GAACGGa ||| | | :|| || |||||| gaGCUUUCCUGUAGAAUCCUUGCCu 2 21 1107 1131 [rn4:1:204865881-204865905:-] 0.5343 123 6 -19.86 -0.6199 MIMAT0000812 rno-miR-33 60465 Cttn acguuACGUUG-AUGUUACGUg ||:|:| |||||||| aggucUGUAGCACACAAUGCAu 2 17 642 663 [rn4:1:204866349-204866370:-] 0.4904 155 7 -16.12 -0.1545 MIMAT0000829 rno-miR-125a-5p 60465 Cttn aguguccaAUUUC-CC--AGAGUCCCu |::|| || ||||||| agugcuccUGGAGUGGCCACUCAGGGa 2 17 377 403 [rn4:1:204866609-204866635:-] 0.4519 142 7 -20.99 -0.1412 MIMAT0000830 rno-miR-125b-5p 60465 Cttn agugUUCAAUCCCAGAGUCCCu :|| |:| ||||||| ccugGAG-UGGCCACUCAGGGa 2 19 383 403 [rn4:1:204866609-204866629:-] 0.4519 144 7 -18.89 -0.1385 MIMAT0000844 rno-miR-138 60465 Cttn gccGGACUAAG-U-GUUGUGGUCGa || || | | ||:||||||| cacCCAGAGCCUACCAGCACCAGCa 2 21 7 31 [rn4:1:204866981-204867005:-] 0.5792 154 7 -22.58 -0.3806 MIMAT0000846 rno-miR-141 60465 Cttn gguaGAAA--UGGUCUGU-CACAAu |||| :||| || ||||| auuaCUUUCAGCCAUCCAGGUGUUu 2 19 228 252 [rn4:1:204866760-204866784:-] 0.6364 121 0 -13.11 -0.2780 MIMAT0000849 rno-miR-143 60465 Cttn acucGAUGUCACGAAGUAGAGu || || | ||||||| uuuaCUCCACCUCCUCAUCUCa 2 19 537 558 [rn4:1:204866454-204866475:-] 0.4519 150 7 -13.48 -0.2453 MIMAT0000866 rno-miR-191 60465 Cttn gucgacgaaAACCCUAAGGCAAc ||| ||||||| guagaauccUUGCCUUUCCGUUg 2 15 1117 1139 [rn4:1:204865873-204865895:-] 0.5343 146 7 -16.27 -0.3889 MIMAT0000885 rno-miR-214 60465 Cttn gacGGACAGACACGGACGACa ||| ||| ||||||| accCCUUUCU---CCUGCUGc 2 19 587 604 [rn4:1:204866408-204866425:-] 0.4519 150 7 -18.47 -0.1624 MIMAT0003203 rno-miR-485 60465 Cttn cuuaAGUAGUGCCGGUCGG-AGa | ||:|| :||||| || ugggUGAUUACUUUCAGCCAUCc 2 19 222 244 [rn4:1:204866768-204866790:-] 0.6364 122 0 -17.25 -0.4421 MIMAT0005284 rno-miR-874 60465 Cttn agccagggagcccGGUCCCGUc :||||||| guacguagccacuUCAGGGCAu 2 10 275 296 [rn4:1:204866716-204866737:-] 0.5442 141 7 -19.53 -0.2180 MIMAT0005300 rno-miR-182 60465 Cttn gccacaCUCAAGAUGGUAACGGUUu | |||:|| | ||||||| auccagGUGUUUUAGCUUUGCCAAg 2 20 241 265 [rn4:1:204866747-204866771:-] 0.6364 167 7 -20.01 -0.3416 MIMAT0005300 rno-miR-182 60465 Cttn gccacACUCAAGAUGGUAACGGUUu || ||||| : ||||||| ggagcUGUGUUCU--UUUUGCCAAa 2 21 841 863 [rn4:1:204866149-204866171:-] 0.4904 157 7 -19.07 -1.0465

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G014459 Cttn Rattus norvegicus 60465

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cttn RAID00161720 rno-miR-6320 miRNA MIMAT0025058 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID00378789 rno-miR-31a-5p miRNA MIMAT0000810 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID00914648 rno-miR-138-5p miRNA MIMAT0000844 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID01201299 rno-miR-874-3p miRNA MIMAT0005284 Cttn mRNA 60465 Prediction 0.2202 Cttn RAID01324919 rno-miR-485-5p miRNA MIMAT0003203 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID01699959 rno-miR-340-5p miRNA MIMAT0004650 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID01821408 rno-miR-143-3p miRNA MIMAT0000849 Cttn mRNA 60465 Prediction 0.2202 Cttn RAID02059443 rno-miR-182 miRNA MIMAT0005300 Cttn mRNA 60465 Prediction 0.2381 Cttn RAID02156566 rno-miR-191a-5p miRNA MIMAT0000866 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID02902340 rno-miR-211-3p miRNA MIMAT0017157 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03019872 rno-miR-3541 miRNA MIMAT0017795 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03421341 rno-miR-33-5p miRNA MIMAT0000812 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03435907 rno-miR-141-3p miRNA MIMAT0000846 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03475078 rno-miR-351-5p miRNA MIMAT0000608 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03624784 rno-miR-142-3p miRNA MIMAT0000848 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03704456 rno-miR-125b-5p miRNA MIMAT0000830 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03776295 rno-miR-214-3p miRNA MIMAT0000885 Cttn mRNA 60465 Prediction 0.1828 Cttn RAID03848183 rno-miR-125a-5p miRNA MIMAT0000829 Cttn mRNA 60465 Prediction 0.1828