DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 32229 CG12717 caCGUUUGCUAAAAGU-UGUGu | ||| | ||||| |||| aaGGAAA--AGUUUCAUACACa 2 20 146 165 [dm3:X:12655166-12655185:-] 0.5127 120 0 -11.38 -1.0883 MIMAT0000364 dme-miR-289 32229 CG12717 ucagcguccgaggugaaUUUAUAAAu |||||||| gucaccaaaugaauagaAAAUAUUUu 2 10 347 372 [dm3:X:12654959-12654984:-] 0.5043 145 7 -7.11 -1.1465 MIMAT0011784 dme-miR-2279* 32229 CG12717 uuaaagUGUGUGUCUAUAAAuu |:| | | |||||| aaaugaAUAGA-AAAUAUUUua 3 17 353 373 [dm3:X:12654958-12654978:-] 0.5043 126 0 -3.99 -0.1743 MIMAT0011787 dme-miR-2280* 32229 CG12717 agucaaucgaaccuuCAUUUAa |||||| uuagaaacaaaauuuGUAAAUa 2 8 371 392 [dm3:X:12654939-12654960:-] 0.5047 120 6 -3.30 -0.2894 MIMAT0011791 dme-miR-2283 32229 CG12717 uaacagcaUAAGUACUAUAAAAg || ||| ||||||| aagugaaaAUACAU-AUAUUUUc 2 16 15 36 [dm3:X:12655295-12655316:-] 0.4605 153 7 -8.77 -0.8508 MIMAT0011791 dme-miR-2283 32229 CG12717 uaacaGCAUAAGUACUAUAAAAg :| || | ||||||| ccaaaUGAAUAGAAAAUAUUUUa 2 19 351 373 [dm3:X:12654958-12654980:-] 0.5043 146 7 -2.54 -1.2527 MIMAT0012196 dme-miR-2489 32229 CG12717 ugacguuUAUGU-UGUAUGUUAu ||||| ||||||||| aaguuucAUACACACAUACAAUc 2 16 152 174 [dm3:X:12655157-12655179:-] 0.5127 166 7 -13.86 -0.4853 MIMAT0012199 dme-miR-2492 32229 CG12717 aaacuuucGAGAGCUGUUUUGUa :|:|| |||||||| uacauauaUUUUCUACAAAACAa 2 16 24 46 [dm3:X:12655285-12655307:-] 0.4605 159 7 -12.32 -1.1166 MIMAT0012203 dme-miR-2494 32229 CG12717 gaacaUUCACCUGU-AAUGACC-CUu ||| || :| |||||| || cgauaAAGAGGCUACCUACUGGAGAg 2 20 203 228 [dm3:X:12655103-12655128:-] 0.5127 122 0 -15.56 -0.6262 MIMAT0012215 dme-miR-2500 32229 CG12717 gacuccAGGUGUGUGUUUUAGg |::| | |||||||: aaauauUUUAGAAACAAAAUUu 2 17 364 385 [dm3:X:12654946-12654967:-] 0.5047 140 0 -6.94 -0.1041 MIMAT0000114 dme-miR-9a 32229 CG12717 agUAUGUCGAUCUAUUGGUUUcu || ||| || | |||||| aaAUUCAGAAAG-UCACCAAAug 3 22 336 357 [dm3:X:12654974-12654995:-] 0.5039 139 0 -11.97 -0.1032 MIMAT0000347 dme-miR-283 32229 CG12717 ucUUAAUGGUCGACUAUAAAu ||| | :|| |||||| caAAUGAAUAGAAAAUAUUUu 2 20 352 372 [dm3:X:12654959-12654979:-] 0.5043 127 6 -6.11 -0.1063 MIMAT0000392 dme-miR-9c 32229 CG12717 agAUGUCGAUCUUA-UGGUUUcu | ||| | |:| |||||| aaUUCAG--AAAGUCACCAAAug 3 21 337 357 [dm3:X:12654974-12654994:-] 0.5039 128 0 -11.98 -0.1032 MIMAT0000395 dme-miR-9b 32229 CG12717 guAUGUCGAUUUUAGUGGUUUcu | ||| |||:|||||||| aaUUCAG--AAAGUCACCAAAug 3 22 337 357 [dm3:X:12654974-12654994:-] 0.5039 150 0 -18.51 -0.1042 MIMAT0000407 dme-miR-315 32229 CG12717 cgaaagACUCGUUGUUAGUUUu ||: ||| ||||||: ggagaaUGGACAAAAAUCAAGa 2 17 306 327 [dm3:X:12655004-12655025:-] 0.5039 144 0 -11.82 -0.1596 MIMAT0005520 dme-miR-1000 32229 CG12717 ugacgacacUGUCCUGUUAUa |:: ||||||| guaaauaaaAUGCGACAAUAa 2 13 386 406 [dm3:X:12654925-12654945:-] 0.5047 144 7 -7.14 -0.9336

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG12717 RAID00157690 dme-miR-9c-5p miRNA MIMAT0000392 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID00704839 dme-miR-4-3p miRNA MIMAT0000109 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID01014921 dme-miR-282-5p miRNA MIMAT0000346 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID01178473 dme-miR-315-5p miRNA MIMAT0000407 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID01456863 dme-miR-283-5p miRNA MIMAT0000347 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID01674424 dme-miR-316-5p miRNA MIMAT0000408 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID01910533 dme-miR-1003-3p miRNA MIMAT0005016 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID01964220 dme-miR-966-5p miRNA MIMAT0005481 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID02030003 dme-miR-9a-5p miRNA MIMAT0000114 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID02177170 dme-miR-1017-3p miRNA MIMAT0005030 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID02382526 dme-miR-1004-3p miRNA MIMAT0005017 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID02694273 dme-miR-79-3p miRNA MIMAT0000352 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID02743187 dme-miR-1000-5p miRNA MIMAT0005520 CG12717 mRNA 32229 Prediction 0.2202 CG12717 RAID03161191 dme-miR-317-3p miRNA MIMAT0000409 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID03609965 dme-miR-263b-5p miRNA MIMAT0000362 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID03914101 dme-miR-9b-5p miRNA MIMAT0000395 CG12717 mRNA 32229 Prediction 0.1828 CG12717 RAID04047729 dme-miR-219-5p miRNA MIMAT0000335 CG12717 mRNA 32229 Prediction 0.1828