DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32557 CG8924 auAGUAAAGUAUACGUUGCAUUUAUGu |||| |||| |||| |||||| agUCAUAACAUAGUCAAC-AAAAUACa 2 26 118 143 [dm3:X:15838206-15838231:+] 0.5605 147 6 -17.60 -0.2411 MIMAT0000343 dme-miR-280 32557 CG8924 auaGUAAAGUAUACGUUGCAUUUAUgu ::| |::| :|| |||||| uacUGUAUUGUUAAUAAGAUAAAUAaa 3 25 350 376 [dm3:X:15838438-15838464:+] 0.4885 132 0 -5.47 -0.1030 MIMAT0000360 dme-miR-287 32557 CG8924 cacGU-UUGCUAAAAGUUGUgu || ||| || |||||| aguCAUAAC-AUAGUCAACAaa 3 19 118 138 [dm3:X:15838206-15838226:+] 0.5605 131 0 -9.17 -0.2723 MIMAT0005025 dme-miR-1012 32557 CG8924 gauaccccUUUUAGAAACUGAUu ||:: :| |||||| cuaucaacAAGGAUUAUGACUAa 2 16 272 294 [dm3:X:15838360-15838382:+] 0.4763 123 6 -10.63 -0.1724 MIMAT0005026 dme-miR-1013 32557 CG8924 gcucaaGCCGUAUGAAAAUa | | | ||||||| aucgacCUGGAAACUUUUAc 2 15 377 396 [dm3:X:15838465-15838484:+] 0.4513 146 7 -12.07 -0.3502 MIMAT0011788 dme-miR-2281* 32557 CG8924 aacguagacgucgacgUCUAUUa |||||| uacuguauuguuaauaAGAUAAa 2 8 350 372 [dm3:X:15838438-15838460:+] 0.4885 120 6 -11.09 -0.2304 MIMAT0012196 dme-miR-2489 32557 CG8924 ugacguuuaUGUUGUAUGUUAu |||| ||||||| acauagucaACAAAAUACAAUu 2 14 125 146 [dm3:X:15838213-15838234:+] 0.5408 157 7 -10.50 -1.2157 MIMAT0012215 dme-miR-2500 32557 CG8924 gacuccagguGUGUGUUUUAgg || ||||||| auaacauaguCA-ACAAAAUac 3 13 122 142 [dm3:X:15838210-15838230:+] 0.5605 126 0 -7.81 -0.2042 MIMAT0000352 dme-miR-79 32557 CG8924 uaCGAAACCAUUAGAU-CGAAAu |:|| |||| || ||||| agGUUUACUUAAU-UACGCUUUg 2 21 154 175 [dm3:X:15838242-15838263:+] 0.5211 122 0 -8.55 -0.8655 MIMAT0000389 dme-miR-31b 32557 CG8924 gucgauaaggcUGUAGAACGGu || ||||||| uugguugaaaaAC-UCUUGCCg 2 12 196 216 [dm3:X:15838284-15838304:+] 0.5088 141 7 -15.77 -0.6194 MIMAT0000400 dme-miR-31a 32557 CG8924 agucGAUACGGCUGU---AGAACGGu || |::|| | ||||||| uaucCUUGGUUGAAAAACUCUUGCCg 2 20 191 216 [dm3:X:15838279-15838304:+] 0.5088 146 7 -18.63 -0.6480 MIMAT0005480 dme-miR-965 32557 CG8924 uuccCCUUUUCGAU--AUGCGAAu || | :|| ||||||| cauaGGUUUACUUAAUUACGCUUu 2 19 151 174 [dm3:X:15838239-15838262:+] 0.5211 141 7 -11.81 -0.9639 MIMAT0005483 dme-miR-1002 32557 CG8924 agcgggAAACAUAGGU---GAUGAAUu ||| || :| :|||||| auacaaUUUAUACAUAGGUUUACUUAa 2 19 139 165 [dm3:X:15838227-15838253:+] 0.5408 129 6 -7.38 -0.1575 MIMAT0005504 dme-miR-987 32557 CG8924 guAGUUAGGUCUGA-U-AAAUGAAAu |||||| |:| | |||||||| guUCAAUCAUUAUUCAUUUUACUUUg 2 23 216 241 [dm3:X:15838304-15838329:+] 0.4965 164 7 -13.96 -0.7415 MIMAT0005504 dme-miR-987 32557 CG8924 guaGUUAGGUCUG-AU--AAAUGAAau ||||::| || || ||||||| auaCAAUUUAUACAUAGGUUUACUUaa 3 22 139 165 [dm3:X:15838227-15838253:+] 0.5408 147 0 -12.30 -0.1291 MIMAT0005516 dme-miR-252 32557 CG8924 gaggacgccgugaucAUGAAUc |||||| auuuauacauagguuUACUUAa 2 8 144 165 [dm3:X:15838232-15838253:+] 0.5211 120 6 -6.15 -0.1440

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8924 RAID00430142 dme-miR-1002-5p miRNA MIMAT0005483 CG8924 mRNA 32557 Prediction 0.2202 CG8924 RAID00626933 dme-miR-31b-5p miRNA MIMAT0000389 CG8924 mRNA 32557 Prediction 0.2202 CG8924 RAID00642989 dme-miR-965-3p miRNA MIMAT0005480 CG8924 mRNA 32557 Prediction 0.2202 CG8924 RAID00933983 dme-miR-1012-3p miRNA MIMAT0005025 CG8924 mRNA 32557 Prediction 0.1828 CG8924 RAID01189168 dme-miR-1013-3p miRNA MIMAT0005026 CG8924 mRNA 32557 Prediction 0.1828 CG8924 RAID01612611 dme-miR-991-3p miRNA MIMAT0005509 CG8924 mRNA 32557 Prediction 0.1828 CG8924 RAID01700072 dme-miR-31a-5p miRNA MIMAT0000400 CG8924 mRNA 32557 Prediction 0.2202 CG8924 RAID02504872 dme-miR-79-3p miRNA MIMAT0000352 CG8924 mRNA 32557 Prediction 0.1828 CG8924 RAID03356951 dme-miR-987-5p miRNA MIMAT0005504 CG8924 mRNA 32557 Prediction 0.2202 CG8924 RAID03509594 dme-miR-252-5p miRNA MIMAT0005516 CG8924 mRNA 32557 Prediction 0.2202