DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 33024 CG17068 ucAGCGUC-CGAGGUGAAUUUAUAAAu |:|:|| || || |||||||| uuUUGUAGAGCAACAAGCAAAUAUUUu 2 25 471 497 [dm3:X:20119446-20119472:-] 0.5129 163 7 -15.12 -0.9607 MIMAT0000364 dme-miR-289 33024 CG17068 ucagcguccGAGGUGAAU-UUAUAAAu :|||| : ||||||| auguuuuucUUCCAAAAGUAAUAUUUu 2 18 434 460 [dm3:X:20119483-20119509:-] 0.5129 144 7 -10.72 -0.8155 MIMAT0000364 dme-miR-289 33024 CG17068 ucagcguccgagGUGAAUU-UAUAAAu :|:|||| |||||| uuuaauaaaacaUAUUUAAUAUAUUUc 2 15 532 558 [dm3:X:20119385-20119411:-] 0.5084 126 6 -5.95 -0.8794 MIMAT0000364 dme-miR-289 33024 CG17068 ucAGCGUCCGAGGUGAAUUU-AUAAAu || : || |||: ||| ||||| cgUCAUUGG--CCAUGGAAAUUAUUUg 2 25 72 96 [dm3:X:20119847-20119871:-] 0.5116 121 0 -12.78 -0.6475 MIMAT0000364 dme-miR-289 33024 CG17068 ucagcguccgaggugaauuUAUAAAu |||||| uauuucaauuuaauaaaacAUAUUUa 2 8 524 549 [dm3:X:20119394-20119419:-] 0.5084 120 6 -7.14 -0.4287 MIMAT0005488 dme-miR-972 33024 CG17068 cggaUUUAUAAGCAUA-ACAUGu || ||||:| || ||||| uggaAAUUAUUUG-AUCUGUACg 2 19 84 105 [dm3:X:20119838-20119859:-] 0.5108 128 0 -11.01 -1.0012 MIMAT0005022 dme-miR-1009 33024 CG17068 gacUUUACAUUGUUAAAAACUCu ||| ||||: ||||||||| uccAAAAGUAAU-AUUUUUGAGc 2 21 444 465 [dm3:X:20119478-20119499:-] 0.5129 174 7 -13.49 -0.9305 MIMAT0011784 dme-miR-2279* 33024 CG17068 uuAAAGUGUGUGUCUAUAAAUu ||| |:| | | ||||||| aaUUUAAUA-AAACAUAUUUAa 2 21 530 550 [dm3:X:20119393-20119413:-] 0.5084 158 7 -6.00 -1.1982 MIMAT0011784 dme-miR-2279* 33024 CG17068 uuaaagUGUGUGUCUAUAAAuu ||| :|| |||||| agagcaACAAGCAAAUAUUUua 3 17 477 498 [dm3:X:20119445-20119466:-] 0.5129 140 0 -6.93 -0.1125 MIMAT0011784 dme-miR-2279* 33024 CG17068 uuaaaGUGUGUGUCUAUAAAuu :| |: : |||||| aagacUAAAUUGGUAUAUUUca 3 18 509 530 [dm3:X:20119413-20119434:-] 0.5106 121 0 -2.78 -0.1733 MIMAT0011791 dme-miR-2283 33024 CG17068 uaacagcauaagUACUAUAAAAg :| ||||||| uuucuuccaaaaGUAAUAUUUUu 2 12 439 461 [dm3:X:20119482-20119504:-] 0.5129 143 7 -3.11 -0.6338 MIMAT0011791 dme-miR-2283 33024 CG17068 uaacaGCAUAAGUACUAUAAAag | ||||:| |||||| uaaaaCAUAUUUAAUAUAUUUcc 3 19 537 559 [dm3:X:20119384-20119406:-] 0.5084 142 0 -6.60 -0.3165 MIMAT0011791 dme-miR-2283 33024 CG17068 uaacagcauaaguacUAUAAAAg ||||||| uagagcaacaagcaaAUAUUUUa 2 9 476 498 [dm3:X:20119445-20119467:-] 0.5129 140 7 -3.24 -1.1950 MIMAT0011791 dme-miR-2283 33024 CG17068 uaacagcaUAAGUACUAUAAAag ||| :| |||||| aagacuaaAUUGGU-AUAUUUca 3 16 509 530 [dm3:X:20119413-20119434:-] 0.5106 129 0 -7.02 -0.1578 MIMAT0012198 dme-miR-2491 33024 CG17068 ucguuGACGUUUCCGUUG-UCGc :||:|:| ||||| ||| agguuUUGUAGA-GCAACAAGCa 2 18 468 489 [dm3:X:20119454-20119475:-] 0.5129 123 0 -16.32 -1.0149 MIMAT0012199 dme-miR-2492 33024 CG17068 aaacuuucgaGAGCUGUUUUGUa :|: |:|||||| uauauuucaaUUUAAUAAAACAu 2 14 522 544 [dm3:X:20119399-20119421:-] 0.5084 133 6 -7.76 -0.2586 MIMAT0012202 dme-miR-2494* 33024 CG17068 aaggguuagaccacGUGAAUg |||||| cucucaacgaacacCACUUAa 2 8 413 433 [dm3:X:20119510-20119530:-] 0.5129 120 6 -11.20 -0.1388 MIMAT0012214 dme-miR-2500* 33024 CG17068 ccAUAACAUAUACACACAAGGAAUg ||| | |:| ||||||||||| ugUAUGGAUUGUUUGUGUUCCUUAu 2 24 182 206 [dm3:X:20119737-20119761:-] 0.4735 179 7 -22.38 -0.2703 MIMAT0000110 dme-miR-5 33024 CG17068 guAUAGUGUUGCUA--GCAAGGAAa ||| : | :| | :||||||| ugUAU-GGAUUGUUUGUGUUCCUUa 2 22 182 205 [dm3:X:20119738-20119761:-] 0.4735 142 7 -13.77 -1.0358 MIMAT0000120 dme-miR-14 33024 CG17068 auccUCUCUCU-UUUUCUGAcu ||| | | |||||| uuuaAGAUUUACACAAGACUaa 3 18 495 516 [dm3:X:20119427-20119448:-] 0.5129 124 0 -5.36 -0.1276 MIMAT0000338 dme-miR-277 33024 CG17068 acaGCAU-GGUCUAUCACGUAAAu :||| ||| || ||||||| cgcUGUAGCCA-AUUAUGCAUUUc 2 21 334 356 [dm3:X:20119587-20119609:-] 0.5129 157 7 -13.36 -1.0657 MIMAT0000347 dme-miR-283 33024 CG17068 ucuuaauggucgacUAUAAAu |||||| caauuuaauaaaacAUAUUUa 2 8 529 549 [dm3:X:20119394-20119414:-] 0.5084 120 6 -2.67 -0.4223 MIMAT0000409 dme-miR-317 33024 CG17068 ugACCUAUG-GUGGUCGACACAAGu || :||: |::: :||||||| ugUGUGUAUGGAUUGUUUGUGUUCc 2 23 178 202 [dm3:X:20119741-20119765:-] 0.4735 153 7 -14.41 -0.9080 MIMAT0005467 dme-miR-190 33024 CG17068 guuGGUUCUUAUAGUUUGUAUAGa :||| || ||||||||: auuUCAAUUUAAUAAAACAUAUUu 2 22 525 548 [dm3:X:20119395-20119418:-] 0.5084 145 0 -11.25 -0.1903 MIMAT0005485 dme-miR-969 33024 CG17068 uuuugaacgaaucaCCUUGAg |||||| cuaguuccaaaaugGGAACUa 2 8 124 144 [dm3:X:20119799-20119819:-] 0.5100 120 6 -10.39 -0.1021 MIMAT0005487 dme-miR-971 33024 CG17068 agugacauucUUCAUUGUGGUu || ||||||| cgucccucucAACGAACACCAc 2 13 408 429 [dm3:X:20119514-20119535:-] 0.5129 144 7 -9.40 -0.5523 MIMAT0005506 dme-miR-989 33024 CG17068 caaggugaugcAGUGUAGUGu |:||||||| gugcauaguuuUUACAUCACu 2 11 148 168 [dm3:X:20119775-20119795:-] 0.4917 146 7 -12.06 -0.9037 MIMAT0005512 dme-miR-993 33024 CG17068 ucuauggacaucucuGCUCGAAg :|||||| caaaaguaauauuuuUGAGCUUa 2 9 446 468 [dm3:X:20119475-20119497:-] 0.5129 124 6 -9.66 -0.1111 MIMAT0005513 dme-miR-994 33024 CG17068 uaGUGCC-GAU-GAUA-AAGGAAUc :|:|| :|: :|:| ||||||| ugUAUGGAUUGUUUGUGUUCCUUAu 2 21 182 206 [dm3:X:20119737-20119761:-] 0.4735 149 7 -15.06 -0.2774 MIMAT0005020 dme-miR-1007 33024 CG17068 acguUUGUCAAUUAACUCGAAu ||:| || |||||||| aaguAAUAUUU--UUGAGCUUa 2 19 449 468 [dm3:X:20119475-20119494:-] 0.5129 155 7 -12.73 -1.1963

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG17068 RAID00031196 dme-miR-2b-3p miRNA MIMAT0000107 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID00264721 dme-miR-2c-3p miRNA MIMAT0000411 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID00326900 dme-mir-2a-1 miRNA MI0000117 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID00623363 dme-miR-137-3p miRNA MIMAT0005507 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID00705056 dme-miR-1007-3p miRNA MIMAT0005020 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID00718137 dme-miR-33-5p miRNA MIMAT0000342 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID01147613 dme-miR-994-5p miRNA MIMAT0005513 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID01166965 dme-miR-5-5p miRNA MIMAT0000110 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID01287385 dme-miR-13a-3p miRNA MIMAT0000118 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID01376298 dme-miR-11-3p miRNA MIMAT0000116 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID01619217 dme-miR-1009-3p miRNA MIMAT0005022 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID01632886 dme-miR-283-5p miRNA MIMAT0000347 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID01740737 dme-miR-13b-3p miRNA MIMAT0000119 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID01756055 dme-miR-993-3p miRNA MIMAT0005512 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID01800636 dme-miR-971-3p miRNA MIMAT0005487 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID02095750 dme-miR-7-5p miRNA MIMAT0000112 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID02245203 dme-miR-972-3p miRNA MIMAT0005488 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID02694307 dme-miR-6-3p miRNA MIMAT0000111 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID02702201 dme-miR-989-3p miRNA MIMAT0005506 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID02704740 dme-miR-277-3p miRNA MIMAT0000338 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID03015783 dme-miR-190-5p miRNA MIMAT0005467 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID03296191 dme-miR-308-3p miRNA MIMAT0000399 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID03335935 dme-miR-317-3p miRNA MIMAT0000409 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID03489113 dme-miR-981-3p miRNA MIMAT0005497 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID03549442 dme-miR-969-5p miRNA MIMAT0005485 CG17068 mRNA 33024 Prediction 0.2202 CG17068 RAID03636249 dme-miR-14-3p miRNA MIMAT0000120 CG17068 mRNA 33024 Prediction 0.1828 CG17068 RAID03645516 dme-miR-2a-3p miRNA MIMAT0000106 CG17068 mRNA 33024 Prediction 0.1828