DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37199 CG15118 auaguaaaguAUACGUUGCAUUUAUGu || |: :: ||||||| accuucgggcUAAGUUGUAUAAAUACu 2 18 364 390 [dm3:2R:15021646-15021672:-] 0.5816 149 7 -8.90 -0.8954 MIMAT0000343 dme-miR-280 37199 CG15118 auaguaaaguAUACGUUGCAUUUAUGu || |: :: ||||||| accuucgggcUAAGUUGUAUAAAUACu 2 18 48 74 [dm3:2R:15021646-15021672:-] 0.5816 149 7 -8.90 -0.9513 MIMAT0005464 dme-miR-iab-4as-3p 37199 CG15118 auuugcAUAUGACUUACAUAGg ||||: ||||||| acccuaUAUAUACCAUGUAUCc 2 17 517 538 [dm3:2R:15021498-15021519:-] 0.5671 152 7 -14.15 -0.3956 MIMAT0005464 dme-miR-iab-4as-3p 37199 CG15118 auuugcAUAUGACUUACAUAGg ||||: ||||||| acccuaUAUAUACCAUGUAUCc 2 17 201 222 [dm3:2R:15021498-15021519:-] 0.5671 152 7 -14.15 -0.4555 MIMAT0012198 dme-miR-2491 37199 CG15118 ucGUUGACGUUUCCGUUGUCgc || | | ||| |||||| auCAUCAGGAAA-ACAACAG-- 3 21 480 498 [dm3:2R:15021222-15021240:-] 0.5437 134 0 -9.16 -0.1304 MIMAT0012214 dme-miR-2500* 37199 CG15118 ccauaacaUAUACACACA-AGGAAUg ||: || || |||||| uuagccacAUGCUUGCGUGUCCUUAa 2 18 658 683 [dm3:2R:15021353-15021378:-] 0.5658 121 6 -12.54 -0.5595 MIMAT0012214 dme-miR-2500* 37199 CG15118 ccauaacaUAUACACACA-AGGAAUg ||: || || |||||| uuagccacAUGCUUGCGUGUCCUUAa 2 18 342 367 [dm3:2R:15021353-15021378:-] 0.5658 121 6 -12.54 -0.6266 MIMAT0012217 dme-miR-2501* 37199 CG15118 uuucUUUC-AAACUAACGUUCUCa |||| || | |||||||| cguuAAAGCUUAGCCUGCAAGAGc 2 20 288 311 [dm3:2R:15021725-15021748:-] 0.6269 162 7 -13.52 -0.5473 MIMAT0012217 dme-miR-2501* 37199 CG15118 uuuCUUUCAAACUAACGUUCUCa | :| | | | ||||||| cauGCGACUGUCACAGCAAGAGc 2 21 214 236 [dm3:2R:15021800-15021822:-] 0.6269 148 7 -10.74 -0.4447 MIMAT0000351 dme-miR-124 37199 CG15118 gaaccGUAAGUGGCGCAC-GGAAu ||| | ::||||| |||| agccaCAUGC-UUGCGUGUCCUUa 2 19 660 682 [dm3:2R:15021354-15021376:-] 0.5658 124 0 -20.55 -0.5069 MIMAT0000351 dme-miR-124 37199 CG15118 gaaccGUAAGUGGCGCAC-GGAAu ||| | ::||||| |||| agccaCAUGC-UUGCGUGUCCUUa 2 19 344 366 [dm3:2R:15021354-15021376:-] 0.5658 124 0 -20.55 -0.5721 MIMAT0000352 dme-miR-79 37199 CG15118 uacGAAACCAUUAG-AUCGAAAu | || |||:|: ||||||| aguCCUU-GUAGUUGUAGCUUUu 2 20 544 565 [dm3:2R:15021471-15021492:-] 0.5671 156 7 -12.34 -0.4594 MIMAT0000352 dme-miR-79 37199 CG15118 uacGAAACCAUUAG-AUCGAAAu | || |||:|: ||||||| aguCCUU-GUAGUUGUAGCUUUu 2 20 228 249 [dm3:2R:15021471-15021492:-] 0.5671 156 7 -12.34 -0.5224 MIMAT0000408 dme-miR-316 37199 CG15118 gcggucauucgccuUUUUCUGu ||||||| ---------cgcuuAAAAGACa 2 9 1 13 [dm3:2R:15022023-15022035:-] 0.6269 140 7 -12.54 -0.5875 MIMAT0000409 dme-miR-317 37199 CG15118 ugACCUAUGGU-GGUCGACACAAGu | ||| | | |: ||||||| uuUUGAUCCAAGCUUUGUGUGUUCu 2 23 48 72 [dm3:2R:15021964-15021988:-] 0.6269 149 7 -15.58 -0.6100 MIMAT0000413 dme-miR-iab-4-3p 37199 CG15118 caaugcAUAUGACUUCCAUAUGGc |||:| || |||||| caccauUAUGCGUAAUUUAUACCa 2 19 699 722 [dm3:2R:15021314-15021337:-] 0.5698 130 6 -10.70 -0.1892 MIMAT0000413 dme-miR-iab-4-3p 37199 CG15118 caaugcAUAUGACUUCCAUAUGGc |||:| || |||||| caccauUAUGCGUAAUUUAUACCa 2 19 383 406 [dm3:2R:15021314-15021337:-] 0.5698 130 6 -10.70 -0.2242 MIMAT0000413 dme-miR-iab-4-3p 37199 CG15118 caaugcauaugacuuccAUAUGGc |||||| gaaggauccacccuauaUAUACCa 2 8 192 215 [dm3:2R:15021505-15021528:-] 0.5671 120 6 -9.29 -0.1012 MIMAT0005483 dme-miR-1002 37199 CG15118 agcGGGAA-ACAUAGGUGAU-GAAUu |: || | || :|||| |||| uauCUAUUAUCUAGAUACUAUCUUAa 2 22 579 604 [dm3:2R:15021432-15021457:-] 0.5671 120 0 -10.58 -1.0373 MIMAT0005483 dme-miR-1002 37199 CG15118 agcGGGAA-ACAUAGGUGAU-GAAUu |: || | || :|||| |||| uauCUAUUAUCUAGAUACUAUCUUAa 2 22 263 288 [dm3:2R:15021432-15021457:-] 0.5671 120 0 -10.58 -1.0848 MIMAT0005484 dme-miR-968 37199 CG15118 guUGGGAAAU-UACCUAUGAU-GAAu |:|: ||| | ||||||| ||| guAUCUAUUAUCUAGAUACUAUCUUa 2 23 578 603 [dm3:2R:15021433-15021458:-] 0.5671 133 0 -13.47 -1.1866 MIMAT0005484 dme-miR-968 37199 CG15118 guUGGGAAAU-UACCUAUGAU-GAAu |:|: ||| | ||||||| ||| guAUCUAUUAUCUAGAUACUAUCUUa 2 23 262 287 [dm3:2R:15021433-15021458:-] 0.5671 133 0 -13.47 -1.2158 MIMAT0005487 dme-miR-971 37199 CG15118 aguGACAUUCUUCAUU-GUGGUu |||||| | ||| ||||| aauCUGUAACCACUAAUCACCAu 2 20 682 704 [dm3:2R:15021332-15021354:-] 0.5910 135 0 -13.63 -1.0607 MIMAT0005487 dme-miR-971 37199 CG15118 aguGACAUUCUUCAUU-GUGGUu |||||| | ||| ||||| aauCUGUAACCACUAAUCACCAu 2 20 366 388 [dm3:2R:15021332-15021354:-] 0.5910 135 0 -13.63 -1.1057 MIMAT0005519 dme-miR-999 37199 CG15118 ucUGUGUCAGAAUGUCA-AUUGu |:|: | :|| ||| |||| uuAUAUUGAUUUCAAGUGUAACc 2 21 344 366 [dm3:2R:15021670-15021692:-] 0.5961 120 0 -4.48 -0.8894 MIMAT0005519 dme-miR-999 37199 CG15118 ucUGUGUCAGAAUGUCA-AUUGu |:|: | :|| ||| |||| uuAUAUUGAUUUCAAGUGUAACc 2 21 28 50 [dm3:2R:15021670-15021692:-] 0.5961 120 0 -4.48 -0.9615 MIMAT0005020 dme-miR-1007 37199 CG15118 acgUUUGUCA-----AUUAAC-UCGAAu ||::||| ||:||| ||||| ccaAAGUAGUCCUUGUAGUUGUAGCUUu 2 20 537 564 [dm3:2R:15021472-15021499:-] 0.5671 122 0 -14.35 -0.7040 MIMAT0005020 dme-miR-1007 37199 CG15118 acgUUUGUCA-----AUUAAC-UCGAAu ||::||| ||:||| ||||| ccaAAGUAGUCCUUGUAGUUGUAGCUUu 2 20 221 248 [dm3:2R:15021472-15021499:-] 0.5671 122 0 -14.35 -0.7721 MIMAT0005024 dme-miR-1011 37199 CG15118 gacGCUCGCUAAACUUGGUUAUu :| |: |||| ||||||| uuaUGCGUAAUUUAUACCAAUAa 2 21 704 726 [dm3:2R:15021310-15021332:-] 0.5698 160 7 -17.10 -1.2276 MIMAT0005024 dme-miR-1011 37199 CG15118 gacGCUCGCUAAACUUGGUUAUu :| |: |||| ||||||| uuaUGCGUAAUUUAUACCAAUAa 2 21 388 410 [dm3:2R:15021310-15021332:-] 0.5698 160 7 -17.10 -1.2510

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG15118 RAID00448192 dme-miR-6-3p miRNA MIMAT0000111 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID00650159 dme-miR-1011-3p miRNA MIMAT0005024 CG15118 mRNA 37199 Prediction 0.2202 CG15118 RAID00684545 dme-miR-79-3p miRNA MIMAT0000352 CG15118 mRNA 37199 Prediction 0.2202 CG15118 RAID00871726 dme-miR-124-3p miRNA MIMAT0000351 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID00912950 dme-mir-iab-4 miRNA MI0000432 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID00915882 dme-miR-968-5p miRNA MIMAT0005484 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID01100034 dme-miR-308-3p miRNA MIMAT0000399 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID01172266 dme-miR-317-3p miRNA MIMAT0000409 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID01429887 dme-miR-2a-3p miRNA MIMAT0000106 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID01724295 dme-miR-1002-5p miRNA MIMAT0005483 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID01801108 dme-miR-991-3p miRNA MIMAT0005509 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID01870583 dme-miR-2b-3p miRNA MIMAT0000107 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID02099155 dme-miR-2c-3p miRNA MIMAT0000411 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID02161338 dme-mir-2a-1 miRNA MI0000117 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID02280429 dme-miR-999-3p miRNA MIMAT0005519 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID02559849 dme-miR-1007-3p miRNA MIMAT0005020 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID02615582 dme-miR-987-5p miRNA MIMAT0005504 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID03008432 dme-miR-994-5p miRNA MIMAT0005513 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID03169052 dme-miR-13a-3p miRNA MIMAT0000118 CG15118 mRNA 37199 Prediction 0.2202 CG15118 RAID03240928 dme-miR-11-3p miRNA MIMAT0000116 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID03620424 dme-miR-13b-3p miRNA MIMAT0000119 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID03672578 dme-miR-971-3p miRNA MIMAT0005487 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID03686505 dme-miR-316-5p miRNA MIMAT0000408 CG15118 mRNA 37199 Prediction 0.1828 CG15118 RAID03938195 dme-miR-iab-4-3p miRNA MIMAT0000413 CG15118 mRNA 37199 Prediction 0.1828