DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 39818 roq gccccgCUCU-CUUACUA-UUCc |||: ||||||| ||| acaaaaGAGGCGAAUGAUCAAGa 2 16 446 468 [dm3:3L:16367153-16367175:-] 0.4393 126 0 -13.50 -0.4315 MIMAT0000364 dme-miR-289 39818 roq ucaGCGUCCG-AGGUGAAUUUAUAAAu | :|| : | |:||| |||||| aaaCAUAGAUAUAAAUUUAUAUAUUUu 2 24 716 742 [dm3:3L:16366879-16366905:-] 0.5354 130 6 -8.46 -0.2242 MIMAT0000364 dme-miR-289 39818 roq ucagcguccGAGGUGAAUUUAUAAAu ||::|| | |||||| cauauauaaCUUUACAAAUAUAUUUa 2 18 1350 1375 [dm3:3L:16366246-16366271:-] 0.5557 129 6 -10.59 -0.1123 MIMAT0005475 dme-miR-961 39818 roq uaGAGUCAAUGACCACUAGUUu || | ||::| |||||||| ucCUGA-UUGUUUGUGAUCAAa 2 21 671 691 [dm3:3L:16366930-16366950:-] 0.5354 162 7 -15.09 -0.7422 MIMAT0005475 dme-miR-961 39818 roq uagagUCAAUGACCACUAGUUu || :| ||||||| acaaaAGAGGCGAAUGAUCAAg 2 18 446 467 [dm3:3L:16367154-16367175:-] 0.4393 141 7 -11.06 -0.2535 MIMAT0005488 dme-miR-972 39818 roq cggauuuAUAA-GCAUAACAUGu |:|| |||||||| gcgauguUGUUAACUAUUGUACu 2 16 954 976 [dm3:3L:16366645-16366667:-] 0.7365 146 7 -9.12 -1.2538 MIMAT0005502 dme-miR-985 39818 roq acGGGCUGGUAAC-CUUGUAAAc :| |: | ||| |||||||| agUCAGGGCUUUGAGAACAUUUa 2 21 1091 1113 [dm3:3L:16366508-16366530:-] 0.5253 159 7 -17.04 -0.4940 MIMAT0005509 dme-miR-991 39818 roq ugaaagGUUUGAUGUUGAAAUu || | ||:||||||| acauaaCAUA-UAUAACUUUAc 2 17 1344 1364 [dm3:3L:16366257-16366277:-] 0.5557 154 7 -9.86 -1.0729 MIMAT0005509 dme-miR-991 39818 roq ugaaAGGUUUGAU-GUUGAAAUu | :| |:|| :|| |||| guacUAUAUAUUAUUAAAUUUAu 2 19 972 994 [dm3:3L:16366627-16366649:-] 0.7365 121 0 -4.69 -0.1118 MIMAT0005509 dme-miR-991 39818 roq ugaaAGGUUUGAUGUUGAA-AUu ||:|::| | ||||| || aagaUCUAGGC-AGAACUUAUAu 2 19 616 637 [dm3:3L:16366984-16367005:-] 0.4853 120 0 -9.61 -0.5148 MIMAT0005022 dme-miR-1009 39818 roq gacUUUACA---UUGUUAAAA-ACUCu |:|| | |:||||||| |||| cgaAGAUUUUAAAGCAAUUUUCUGAGa 2 21 538 564 [dm3:3L:16367057-16367083:-] 0.4352 131 0 -13.71 -0.8492 MIMAT0011784 dme-miR-2279* 39818 roq uuaAAGUGUGUGUCUAUAAAUu ||:||| |: ||||||| aacUUUACAAAU--AUAUUUAu 2 20 1357 1376 [dm3:3L:16366245-16366264:-] 0.5557 156 7 -6.57 -0.9786 MIMAT0011784 dme-miR-2279* 39818 roq uuaAAGUGUGUGUCUAUAAAuu | :| |: :| |||||| agaUAUAAAUUUAUAUAUUUuu 3 20 722 743 [dm3:3L:16366878-16366899:-] 0.5354 131 0 -4.32 -0.1833 MIMAT0011791 dme-miR-2283 39818 roq uaacagcaUAAGUACUAUAAAAg |||:|| ||||||| agauauaaAUUUAU-AUAUUUUu 2 16 722 743 [dm3:3L:16366878-16366899:-] 0.5354 157 7 -6.96 -1.2168 MIMAT0011791 dme-miR-2283 39818 roq uaACAGCAUAAGUAC---UAUAAAag ||| || ||| |||||| ugUGUGAAAUGAAUGUUUAUAUUUcu 3 22 902 927 [dm3:3L:16366694-16366719:-] 0.6348 128 0 -8.33 -0.1534 MIMAT0011791 dme-miR-2283 39818 roq uaACAGCAUAAGUACUAUAAAAg | |:||| | || ||||| | acUAUUGUACU-AU-AUAUUAUu 2 22 966 986 [dm3:3L:16366635-16366655:-] 0.7365 125 0 -3.55 -0.1577 MIMAT0012199 dme-miR-2492 39818 roq aaacuuucgagagCUGUUUUGUa | ||||||| uuauuggaucggaGCCAAAACAa 2 11 187 209 [dm3:3L:16367412-16367434:-] 0.5278 142 7 -11.18 -0.2183 MIMAT0012199 dme-miR-2492 39818 roq aaacuuUCGAGAGCUGUUUUGUa | || |: ||||||: auuauuAACUAUU-UCAAAACGc 2 18 748 769 [dm3:3L:16366852-16366873:-] 0.5354 127 0 -8.12 -0.2389 MIMAT0012206 dme-miR-2496* 39818 roq augcuaccggagaGUG--UGUGCGUg ||| ||||||| aaucacacacauaCACCAACACGCAu 2 12 837 862 [dm3:3L:16366759-16366784:-] 0.5332 142 7 -15.52 -0.6632 MIMAT0012209 dme-miR-2497 39818 roq gacguuuGUAACAU-UUACAACa :|||||: :|||||| auaacgcUAUUGUGCGAUGUUGu 2 16 941 963 [dm3:3L:16366658-16366680:-] 0.7365 142 6 -15.87 -0.1145 MIMAT0012209 dme-miR-2497 39818 roq gacguuuguaacAUUUACAAca |:|||||| augugugugaaaUGAAUGUUua 3 11 899 920 [dm3:3L:16366701-16366722:-] 0.6348 126 0 -5.55 -0.1603 MIMAT0012209 dme-miR-2497 39818 roq gacgUUUGUAACAUUUAC-AACa |:|:| || ||||| ||| gaugAGAUA-UGCAAAUGCUUGu 2 19 483 504 [dm3:3L:16367117-16367138:-] 0.4352 124 0 -10.42 -0.1616 MIMAT0012212 dme-miR-2499* 39818 roq cguaacgcGACUGCAGAUGCGUgc || || |||||||| acacauacCU-AC-UCUACGCAaa 3 17 1113 1134 [dm3:3L:16366487-16366508:-] 0.5744 132 0 -16.63 -0.1285 MIMAT0012215 dme-miR-2500 39818 roq gacuccAGGUGUGUGUUUUAGg | :|:|:|||||||| uauuuuUAUAUAUACAAAAUCa 2 17 770 791 [dm3:3L:16366830-16366851:-] 0.5354 160 7 -15.40 -1.1304 MIMAT0012215 dme-miR-2500 39818 roq gacuccaggUGUGU-GUUUUAGg |:| | :|||||| uuauugaaaAUAAAUUAAAAUCa 2 14 991 1013 [dm3:3L:16366608-16366630:-] 0.7365 128 6 -8.56 -0.2719 MIMAT0012216 dme-miR-2501 39818 roq aaucgGGUCCGUGA-GGUUUGAAUg |:| :|:| ::|||:||| uuguaCUAUAUAUUAUUAAAUUUAu 2 20 970 994 [dm3:3L:16366627-16366651:-] 0.7365 134 0 -9.34 -0.1010 MIMAT0000347 dme-miR-283 39818 roq ucuuaaUGGUCGACUAUAAAu :|||| ||||||| cacucaGCCAGAGGAUAUUUc 2 16 17 37 [dm3:3L:16367584-16367604:-] 0.5278 155 7 -15.38 -0.8354 MIMAT0000347 dme-miR-283 39818 roq ucUUAAUGGUCGACUAUAAAu ||| | : |:| |||||| gaAAUGAAU-GUUUAUAUUUc 2 20 907 926 [dm3:3L:16366695-16366714:-] 0.6348 125 6 -4.47 -0.1803 MIMAT0000347 dme-miR-283 39818 roq ucuuaauggucgacUAUAAAu |||||| agauauaaauuuauAUAUUUu 2 8 722 742 [dm3:3L:16366879-16366899:-] 0.5354 120 6 -4.42 -0.2242 MIMAT0000347 dme-miR-283 39818 roq ucuuaauggucgacUAUAAAu |||||| auaacuuuacaaauAUAUUUa 2 8 1355 1375 [dm3:3L:16366246-16366266:-] 0.5557 120 6 -4.20 -0.1100 MIMAT0005493 dme-miR-977 39818 roq aaucuguugcacuUAUAGAgu |||||| uaaauuuguauuuAUAUCUag 3 9 1137 1157 [dm3:3L:16366464-16366484:-] 0.5744 120 0 -5.12 -0.1118 MIMAT0005507 dme-miR-137 39818 roq gaUGCACAUAAGAGUUCGUUAu :|| |||:| ||||||| caGCGAAGAUUUUAAAGCAAUu 2 21 535 556 [dm3:3L:16367065-16367086:-] 0.4352 160 7 -13.59 -0.6729 MIMAT0005513 dme-miR-994 39818 roq uagUGCCGAUGAUAAAGGAAUc |:| :|| || ||:|||| ugaAUGUUUA-UA-UUUCUUAa 2 20 911 930 [dm3:3L:16366691-16366710:-] 0.7365 135 0 -8.27 -0.1045 MIMAT0005016 dme-miR-1003 39818 roq gacacuuAUACAUUU-ACACUCu | |||||| |||||| uccccuuUUUGUAAACUGUGAGa 2 16 1024 1046 [dm3:3L:16366575-16366597:-] 0.6064 131 6 -14.89 -0.9543

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score roq RAID00013975 dme-miR-932-5p miRNA MIMAT0005479 roq mRNA 39818 Prediction 0.1828 roq RAID00053577 dme-miR-137-3p miRNA MIMAT0005507 roq mRNA 39818 Prediction 0.2202 roq RAID00849646 dme-miR-972-3p miRNA MIMAT0005488 roq mRNA 39818 Prediction 0.1828 roq RAID00905358 dme-miR-977-3p miRNA MIMAT0005493 roq mRNA 39818 Prediction 0.1828 roq RAID00951648 dme-miR-991-3p miRNA MIMAT0005509 roq mRNA 39818 Prediction 0.1828 roq RAID01144319 dme-miR-33-5p miRNA MIMAT0000342 roq mRNA 39818 Prediction 0.2202 roq RAID01254591 dme-miR-971-3p miRNA MIMAT0005487 roq mRNA 39818 Prediction 0.1828 roq RAID01370484 dme-miR-994-5p miRNA MIMAT0005513 roq mRNA 39818 Prediction 0.1828 roq RAID01630476 dme-miR-317-3p miRNA MIMAT0000409 roq mRNA 39818 Prediction 0.1828 roq RAID01749914 dme-miR-975-5p miRNA MIMAT0005491 roq mRNA 39818 Prediction 0.1828 roq RAID01771444 dme-miR-219-5p miRNA MIMAT0000335 roq mRNA 39818 Prediction 0.1828 roq RAID02023110 dme-miR-283-5p miRNA MIMAT0000347 roq mRNA 39818 Prediction 0.1828 roq RAID02192254 dme-miR-278-3p miRNA MIMAT0000339 roq mRNA 39818 Prediction 0.1828 roq RAID02229595 dme-miR-1004-3p miRNA MIMAT0005017 roq mRNA 39818 Prediction 0.1828 roq RAID02322434 dme-miR-1009-3p miRNA MIMAT0005022 roq mRNA 39818 Prediction 0.1828 roq RAID02697102 dme-miR-1003-3p miRNA MIMAT0005016 roq mRNA 39818 Prediction 0.2202 roq RAID02784675 dme-miR-985-3p miRNA MIMAT0005502 roq mRNA 39818 Prediction 0.1828 roq RAID02948046 dme-mir-307a miRNA MI0000418 roq mRNA 39818 Prediction 0.1828 roq RAID03052735 dme-miR-961-5p miRNA MIMAT0005475 roq mRNA 39818 Prediction 0.1828