DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43856 nej auaguaaaguauacguugcaUUUAUGu |||||| ccaccauuacaaccacuaacAAAUACc 2 8 294 320 [dm3:X:9563420-9563446:-] 0.5111 120 6 -6.86 -0.1821 MIMAT0000360 dme-miR-287 43856 nej cacguuUGCUAA--AAGUUGUgu |: ||| |||||| auuguuAUAAUUAAAUCAACAaa 3 16 236 258 [dm3:X:9563482-9563504:-] 0.5111 122 0 -5.95 -0.1662 MIMAT0005481 dme-miR-966 43856 nej ggugugucgggUGUUGGGUGu |::|||||| uguagauuaagAUGACCCACc 2 11 278 298 [dm3:X:9563442-9563462:-] 0.5111 130 6 -12.70 -0.1229 MIMAT0005509 dme-miR-991 43856 nej ugaaagGUUUGA-UGUUGA-AAUu |:||:| |||||| ||| guuaagCGAAUUAACAACUAUUAc 2 17 163 186 [dm3:X:9563554-9563577:-] 0.5399 127 0 -10.75 -1.1601 MIMAT0011784 dme-miR-2279* 43856 nej uuAAAGUGUGUGUCUAUAAAuu | | |:|: || |||||| uaUAUAAUAU-CAUAUAUUUca 3 21 398 418 [dm3:X:9563322-9563342:-] 0.5111 134 0 -6.14 -0.1047 MIMAT0011784 dme-miR-2279* 43856 nej uuaaagugugugucuAUAAAUu |||||| uaacaaauaccuuauUAUUUAa 2 8 310 331 [dm3:X:9563409-9563430:-] 0.5111 120 6 -6.95 -0.1390 MIMAT0012198 dme-miR-2491 43856 nej ucguugACGUUUCCGUUGUCGc |||| |||||||| ------UGCA---GCAACAGCa 2 17 1 13 [dm3:X:9563727-9563739:-] 0.5802 148 7 -14.50 -1.0228 MIMAT0012199 dme-miR-2492 43856 nej aaacuuucgagagcuGUUUUGUa ||||||| uauuucauaugccccCAAAACAc 2 9 412 434 [dm3:X:9563306-9563328:-] 0.5190 140 7 -5.41 -0.3896 MIMAT0012207 dme-miR-2496 43856 nej auacgcacacacucACGGGGcg |||||| ucauauauuucauaUGCCCCca 3 9 407 428 [dm3:X:9563312-9563333:-] 0.5190 120 0 -12.93 -0.2631 MIMAT0012216 dme-miR-2501 43856 nej aaucggGUCCGUGAGGUUUGAAUg || :|:| | |||||| aauuaaCAACUAUUACUAACUUAa 2 19 171 194 [dm3:X:9563546-9563569:-] 0.5253 126 6 -8.82 -0.2844 MIMAT0000110 dme-miR-5 43856 nej guAUAGUGUUGCUA-GC-AAGGAAa |||:| | : || || |||||| ugUAUUA-AUUAAUGCGAUUCCUUc 2 22 445 468 [dm3:X:9563272-9563295:-] 0.5269 122 6 -13.43 -0.5730 MIMAT0000332 dme-miR-274 43856 nej uaaugggcaaucacagccaGUGUUUu |||||| uuuuuuuuuuaaacggcacCACAAAu 2 8 202 227 [dm3:X:9563513-9563538:-] 0.5109 120 6 -10.66 -0.1539 MIMAT0005476 dme-miR-962 43856 nej cugucguaguuaaagagAUGGAAUa ||||||| uuacaaccacuaacaaaUACCUUAu 2 9 300 324 [dm3:X:9563416-9563440:-] 0.5111 140 7 -10.42 -1.1815 MIMAT0005477 dme-miR-963 43856 nej cuuUGUUG--GACUAUAAAUGGAAca ||||| || | | |||||| auuACAACCACUAACAAAUACCUUau 3 22 299 324 [dm3:X:9563416-9563441:-] 0.5111 140 0 -11.89 -0.1262

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score nej RAID00429713 dme-miR-973-5p miRNA MIMAT0005489 nej mRNA 43856 Prediction 0.1828 nej RAID00985180 dme-miR-991-3p miRNA MIMAT0005509 nej mRNA 43856 Prediction 0.1828 nej RAID01255849 dme-miR-274-5p miRNA MIMAT0000332 nej mRNA 43856 Prediction 0.1828 nej RAID02249833 dme-miR-963-5p miRNA MIMAT0005477 nej mRNA 43856 Prediction 0.1828 nej RAID02324432 dme-miR-14-3p miRNA MIMAT0000120 nej mRNA 43856 Prediction 0.1828 nej RAID02508386 dme-miR-315-5p miRNA MIMAT0000407 nej mRNA 43856 Prediction 0.1828 nej RAID02638714 dme-miR-962-5p miRNA MIMAT0005476 nej mRNA 43856 Prediction 0.2202 nej RAID02681689 dme-miR-1011-3p miRNA MIMAT0005024 nej mRNA 43856 Prediction 0.1828 nej RAID02960757 dme-miR-1-3p miRNA MIMAT0000105 nej mRNA 43856 Prediction 0.1828 nej RAID02988424 dme-miR-5-5p miRNA MIMAT0000110 nej mRNA 43856 Prediction 0.1828 nej RAID04053338 dme-miR-957-3p miRNA MIMAT0005470 nej mRNA 43856 Prediction 0.1828