DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 176220 B0303.7 cauuccaucuuuuaacgUAUCAAgu |||||| uucucugcguuacuauaAUAGUUau 3 9 225 249 [ce6:III:8699328-8699352:+] 0.5000 120 0 -3.94 -0.1506 MIMAT0015119 cel-miR-247* 176220 B0303.7 ccaUUAAUCUUUGAAAAGAGAu || ||| | ||||||| uucAAAUAG-CUCAUUUCUCUg 2 20 211 231 [ce6:III:8699314-8699334:+] 0.5000 149 7 -10.42 -0.6396 MIMAT0015119 cel-miR-247* 176220 B0303.7 ccAUUAAUCUUUGAAAAGAGau |::| :| : |||||| ucUGGUCUUGAUUAUUUCUCac 3 21 2 23 [ce6:III:8699105-8699126:+] 0.6113 124 0 -7.41 -0.2024 MIMAT0000324 cel-miR-268 176220 B0303.7 ugGUUUGACGAAGAUUAAGA-ACGg ||||: || || | |||| ||| uuCAAAUAGC-UC-AUUUCUCUGCg 2 23 211 233 [ce6:III:8699314-8699336:+] 0.5000 126 0 -11.82 -1.1099 MIMAT0000325 cel-miR-269 176220 B0303.7 ucaaaacggucUCAGAACgg :|||||| -------uucuGGUCUUGau 3 10 1 13 [ce6:III:8699104-8699116:+] 0.6113 121 0 -9.27 -0.1394 MIMAT0005522 cel-miR-1021 176220 B0303.7 ggcuCCUAAAGU-GUACUAGAGUGAa || || | :|| ||||||| uucuGGUCUUGAUUAU-UUCUCACUa 2 22 1 25 [ce6:III:8699104-8699128:+] 0.6113 146 7 -13.24 -1.2597 MIMAT0011425 cel-miR-2207 176220 B0303.7 gaAU-AUGUGUCAGAGUUAAGUGu || | | || || ||||||| auUAUUUCUCA--CUAAAUUCACu 2 22 12 33 [ce6:III:8699115-8699136:+] 0.4827 149 7 -9.83 -1.0782 MIMAT0011425 cel-miR-2207 176220 B0303.7 gaaUAUGUGUCAGAGUUAAGUgu || :|: | |||||| gucAUUUAUUUACAAAAUUCAaa 3 21 75 97 [ce6:III:8699178-8699200:+] 0.4824 124 0 -9.48 -0.1474 MIMAT0011434 cel-miR-2209c 176220 B0303.7 acaucacauuggccACCAGAAaa ||||||| -----------uucUGGUCUUga 3 10 1 12 [ce6:III:8699104-8699115:+] 0.6113 125 0 -8.05 -0.2872 MIMAT0011448 cel-miR-2216* 176220 B0303.7 uccgUGUAAAAUUCAUCUAuc ||:||| |||||| auuaACGUUU---GUAGAUca 3 18 191 208 [ce6:III:8699294-8699311:+] 0.5037 129 0 -8.97 -0.1300 MIMAT0011461 cel-miR-2220* 176220 B0303.7 cuauuuaucaAAUACCAGAAUg || |||||||: ----------UUCUGGUCUUGa 2 13 1 12 [ce6:III:8699104-8699115:+] 0.6113 136 0 -10.10 -0.2823 MIMAT0000035 cel-miR-63 176220 B0303.7 aaagguugagcgaagucACAGUAu |||||| uuuuguauuuucuaauaUGUCAUu 2 8 57 80 [ce6:III:8699160-8699183:+] 0.4826 120 6 -8.48 -0.2714 MIMAT0000036 cel-miR-64 176220 B0303.7 aagccauugcgaagucACAGUAu |||||| uuuguauuuucuaauaUGUCAUu 2 8 58 80 [ce6:III:8699161-8699183:+] 0.4826 120 6 -8.49 -0.2762 MIMAT0000037 cel-miR-65 176220 B0303.7 aagccaaugcgaagucACAGUAu |||||| uuuguauuuucuaauaUGUCAUu 2 8 58 80 [ce6:III:8699161-8699183:+] 0.4826 120 6 -7.43 -0.2738 MIMAT0000038 cel-miR-66 176220 B0303.7 aguguAGGGAUUAGUCACAGUAc |::||||| |||||| uguauUUUCUAAU--AUGUCAUu 2 19 60 80 [ce6:III:8699163-8699183:+] 0.4826 127 6 -13.34 -0.2491 MIMAT0000047 cel-miR-75 176220 B0303.7 acUUCGGCCAACCAUCGAAAUu || :| || |||||||| uaAAUUCACUUUCUAGCUUUAu 2 21 24 45 [ce6:III:8699127-8699148:+] 0.4827 156 7 -7.26 -1.0336 MIMAT0000051 cel-miR-79 176220 B0303.7 ucgaaaccauuGGAUCGAAAUa :||||||||| uaaauucacuuUCUAGCUUUAu 2 12 24 45 [ce6:III:8699127-8699148:+] 0.4827 151 7 -13.89 -1.0418 MIMAT0000058 cel-miR-85 176220 B0303.7 cgugcUGAAAAGUUUA--UG-AAACAu :| |||| ||| || ||||| gccuaGCGUUUCCAAUUAACGUUUGUa 2 20 177 203 [ce6:III:8699280-8699306:+] 0.5074 126 0 -9.55 -0.9710 MIMAT0000059 cel-miR-86 176220 B0303.7 cuGACACCGUUUCGUAAGUGAAu :| | | || |||||||| auUUCUCACUAA--AUUCACUUu 2 22 15 35 [ce6:III:8699118-8699138:+] 0.4827 146 7 -9.61 -0.9434 MIMAT0000282 cel-miR-124 176220 B0303.7 accguaaguggcgcACGGAAu |||||| uauuuucaauaaauUGCCUUa 2 8 146 166 [ce6:III:8699249-8699269:+] 0.4949 120 6 -10.82 -0.1382 MIMAT0000283 cel-miR-228 176220 B0303.7 ggcacuuAAGUACGUCACGGUaa ||:|| : |||||| uucuagcUUUAUAU-GUGCCAgu 3 17 34 55 [ce6:III:8699137-8699158:+] 0.4827 130 0 -9.88 -0.1606 MIMAT0000284 cel-miR-229 176220 B0303.7 gcuaccuuuucuauuggucACAGUAa |||||| uuuuuuguauuuucuaauaUGUCAUu 2 8 55 80 [ce6:III:8699158-8699183:+] 0.4826 120 6 -8.40 -0.2714 MIMAT0000285 cel-miR-230 176220 B0303.7 agaggaccagcguguuGAUUAUg |||||| caguuuuuuguauuuuCUAAUAu 2 8 52 74 [ce6:III:8699155-8699177:+] 0.4826 120 6 -10.08 -0.1068 MIMAT0000287 cel-miR-232 176220 B0303.7 aguggcgucaAUUCUAC-GUAAAu ||| ||| ||||| uuguauuuucUAAUAUGUCAUUUa 2 14 59 82 [ce6:III:8699162-8699185:+] 0.4826 121 0 -7.03 -1.2872 MIMAT0000296 cel-miR-240 176220 B0303.7 ucgcuucuaaaccccCGGUCAu |||||| ucuagcuuuauauguGCCAGUu 2 8 35 56 [ce6:III:8699138-8699159:+] 0.4827 120 6 -10.29 -0.1356 MIMAT0000749 cel-lsy-6 176220 B0303.7 gcUUUAC-GCAGA-GUAUGUUUu | ||| | |:| : |||||| uaAUAUGUCAUUUAUUUACAAAa 2 20 69 91 [ce6:III:8699172-8699194:+] 0.4824 121 6 -9.44 -0.2331 MIMAT0004219 cel-miR-784 176220 B0303.7 agauGC-AUGCGUCUAACACGGu || |:||:: ||||||| ucccCGAUGCGUGUUUUGUGCCg 2 19 101 123 [ce6:III:8699204-8699226:+] 0.4824 153 7 -20.78 -0.8362 MIMAT0004219 cel-miR-784 176220 B0303.7 agaugcaugcgucuaACACGGu |||||| cuuucuagcuuuauaUGUGCCa 2 8 32 53 [ce6:III:8699135-8699156:+] 0.4827 120 6 -16.21 -0.2541 MIMAT0004220 cel-miR-785 176220 B0303.7 agAUGUGUUUUGUUAAGUGAAu | | || | ||||||||| auUUCUCACUA-AAUUCACUUu 2 21 15 35 [ce6:III:8699118-8699138:+] 0.4827 154 7 -14.53 -0.9338 MIMAT0004225 cel-miR-790 176220 B0303.7 gcgccacAAGCGCUCACGGUUc ||: : ||||||: uucuagcUUUAUAUGUGCCAGu 2 16 34 55 [ce6:III:8699137-8699158:+] 0.4827 127 0 -16.08 -0.1779 MIMAT0004226 cel-miR-791 176220 B0303.7 acggaAUAGACGCCU-CACGGUUu || || : | ||||||: cuuucUAGCUUUAUAUGUGCCAGu 2 19 32 55 [ce6:III:8699135-8699158:+] 0.4827 129 0 -17.18 -0.1762 MIMAT0004227 cel-miR-792 176220 B0303.7 agACUUUC-AACUUCU--CUAAAGUu | || | ||| ||| |||||| aaUUAACGUUUGUAGAUCAAUUUCAa 2 22 190 215 [ce6:III:8699293-8699318:+] 0.5037 127 6 -7.67 -0.1097

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 B0303.7 cel-miR-228 101 125 -GGCACUUAAGUACGU--CACGGUAA || || |:||: |||||: UCCCCGAUG-CGUGUUUUGUGCCGA- B0303.7 cel-miR-243 102 125 CUAUAGGGCGGCGCU---AGCAUGGC- |||| ||| |:||:||| ----CCCCGAUGCGUGUUUUGUGCCGA B0303.7 cel-miR-273 160 180 GUCGGCUGUG-UCAUGCCCGU ||| |||::|||| -UGCCUUAUCAAGUGUGGGCC B0303.7 cel-miR-36 106 124 GUACGCUUAAAA-GUGGGCCACU ||||| :|||| ::|| GAUGCGUGUUUUGUGCCG----- B0303.7 cel-miR-38 91 111 UGAGGUCAAAAAGAGGGCCACU |:|| ||||| |||| || -AUUCAAAUUUUC-CCCGAUGC B0303.7 cel-miR-784 104 125 AGAUGC-AUGCGUCUAACACGGU- || |:||:: |||||||: ---CCGAUGCGUGUUUUGUGCCGA B0303.7 cel-miR-790 107 126 -GCGCCACAAGCGCUCACGGUUC :|| |||||: |||||:| AUGC-GUGUUUU---GUGCCGAU B0303.7 cel-miR-791 159 181 -ACGGAAUAG---ACGCCUCACGGUUU ||||||||| ||:|| ||| UUGCCUUAUCAAGUGUGG---GCCU-- B0303.7 cel-miR-228 104 126 GGCACUUAAGUAC--GUCACGG-UAA ||| || |:|| : ||||| ||| CCG---ATGCGTGTTTTGTGCCGATT B0303.7 cel-miR-243 98 123 cuauaGGGCGGCGC---UAGCAUGGC |||| :||| |:||:||| ttttcCCCGATGCGTGTTTTGTGCCG B0303.7 cel-miR-273 159 179 guCGG-CUGUGUCAUGCCCGu ||| |: |||::|||| ttGCCTTATCAAGTGTGGGCc B0303.7 cel-miR-36 90 110 gUACGCUUAAAAGUGGGCCACu || | ||||||| |||| || aATTCAAATTTTC-CCCGATGc B0303.7 cel-miR-38 90 110 UGAGGUCAAAAAGAGGGCCACu | |:|| ||||| |||| || AATTCAAATTTTC-CCCGATGc B0303.7 cel-miR-784 101 123 AGAUGC-AUGCGUCUAACACGGu || || |:||:: ||||||| TCCCCGATGCGTGTTTTGTGCCg B0303.7 cel-miR-790 103 125 GCGCCACAAGCGC---UCACGGUUc | || || ||:| |||||:| CCCGATG--CGTGTTTTGTGCCGAt B0303.7 cel-miR-791 160 182 ACGGAAUAGACGCCUCACGGUUu ||||||||| | | ||| | TGCCTTATCAAGTGTGGGCCTAg B0303.7 cel-miR-784 116 123 --------------------AGAUGC-AUGCGUCUAACACGGU || || |:||:: |||||||: UAUUUACAAAAUUCAAAUUUUCCCCGAUGCGUGUUUUGUGCCGA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score B0303.7 RAID00083486 cel-miR-66-5p miRNA MIMAT0000038 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID00252015 cel-miR-784-5p miRNA MIMAT0004219 B0303.7 mRNA 176220 Prediction 0.2202 B0303.7 RAID00422435 cel-miR-791-3p miRNA MIMAT0004226 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID00581816 cel-miR-785-3p miRNA MIMAT0004220 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID00711167 cel-miR-240-3p miRNA MIMAT0000296 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID00712069 cel-miR-792-3p miRNA MIMAT0004227 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID00799292 cel-miR-75-3p miRNA MIMAT0000047 B0303.7 mRNA 176220 Prediction 0.2202 B0303.7 RAID01016535 cel-miR-124-3p miRNA MIMAT0000282 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID01113943 cel-lsy-6-3p miRNA MIMAT0000749 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID01440676 cel-miR-79-3p miRNA MIMAT0000051 B0303.7 mRNA 176220 Prediction 0.2381 B0303.7 RAID01843466 cel-miR-230-3p miRNA MIMAT0000285 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID02409980 cel-miR-232-3p miRNA MIMAT0000287 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID02549687 cel-miR-228-5p miRNA MIMAT0000283 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID02856340 cel-miR-229-5p miRNA MIMAT0000284 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID03482061 cel-miR-86-5p miRNA MIMAT0000059 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID03598873 cel-miR-64-5p miRNA MIMAT0000036 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID03664078 cel-miR-790-5p miRNA MIMAT0004225 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID03771933 cel-miR-85-3p miRNA MIMAT0000058 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID03890101 cel-miR-65-5p miRNA MIMAT0000037 B0303.7 mRNA 176220 Prediction 0.1828 B0303.7 RAID03904357 cel-miR-63-3p miRNA MIMAT0000035 B0303.7 mRNA 176220 Prediction 0.1828