DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 177103 vha-19 acGUGGACAU---GGACGAAGGUAc :|:|| || :|| ||||||| ucUAUCUCUAGCUUCUCCUUCCAUu 2 21 223 247 [ce6:IV:3373139-3373163:+] 0.4405 155 7 -14.34 -0.6741 MIMAT0015099 cel-miR-51* 177103 vha-19 acGUGGACAUGGACGAAGGUAc | ||| ||::| :|||||| ucCUCCU-UAUUUUUUUCCAUa 2 21 168 188 [ce6:IV:3373084-3373104:+] 0.4405 146 6 -14.10 -0.1766 MIMAT0015102 cel-miR-60* 177103 vha-19 uaaaauaccGUGAG-AAGGUCAa :| || ||||||| uccuuccauUAAUCAUUCCAGUu 2 14 238 260 [ce6:IV:3373154-3373176:+] 0.4405 144 7 -13.15 -0.7091 MIMAT0000315 cel-miR-260 177103 vha-19 gauguucucaagcUGUAGUg |||||| ccaaaaacaaauuACAUCAa 2 8 329 348 [ce6:IV:3373245-3373264:+] 0.4661 120 6 -6.86 -0.2202 MIMAT0000321 cel-miR-265 177103 vha-19 uauggugggaAGGAGGGAgu |:|||||| cuuugcuuaaUUCUCCCUau 3 11 289 308 [ce6:IV:3373205-3373224:+] 0.4405 126 0 -13.65 -0.1031 MIMAT0000326 cel-miR-270 177103 vha-19 gaGGUGACGAUGUAGUACGg ::|:| : |||||||: auUUAUUUUCUCAUCAUGUa 2 19 498 517 [ce6:IV:3373414-3373433:+] 0.5000 134 0 -13.39 -0.1111 MIMAT0015121 cel-miR-360* 177103 vha-19 acuggcauuguugcCAGUGUu |||||| agucugcauuuuuaGUCACAu 2 8 526 546 [ce6:IV:3373442-3373462:+] 0.5000 120 6 -12.88 -0.2040 MIMAT0005032 cel-miR-1019 177103 vha-19 gaccuuUCGUUACACCUUAAUGUc | ||| ||||||| ucuuguACCAAAAACAAAUUACAu 2 19 322 345 [ce6:IV:3373238-3373261:+] 0.4661 142 7 -4.34 -0.9669 MIMAT0006586 cel-miR-1819 177103 vha-19 agGUAGUUCGAGUUAGUAAGGu | || | |:||||||||| ucCUUCCA--UUAAUCAUUCCa 2 21 238 257 [ce6:IV:3373154-3373173:+] 0.4405 157 7 -19.45 -1.0862 MIMAT0006587 cel-miR-1820 177103 vha-19 cuuguaguagcuuuuuguUAGUUUu |||||| guaccaaaaacaaauuacAUCAAAa 2 8 326 350 [ce6:IV:3373242-3373266:+] 0.4661 120 6 -8.85 -0.1855 MIMAT0006587 cel-miR-1820 177103 vha-19 cuuGUAGUAGCUUUUUGUUA-GUUUu ::| || | ||| ||| |||| aguUGUAAU-GUAAAUAAAUACAAAa 2 23 403 427 [ce6:IV:3373319-3373343:+] 0.5077 120 0 -5.27 -1.1400 MIMAT0006590 cel-miR-1823 177103 vha-19 aauGAGG--AUUUGUGAAGGUCAu :||| ||| || ||||||| uccUUCCAUUAAUCA-UUCCAGUu 2 20 238 260 [ce6:IV:3373154-3373176:+] 0.4405 156 7 -14.49 -0.6691 MIMAT0011448 cel-miR-2216* 177103 vha-19 uccguguaaaaUUCAUCUAUc ||||||||: aauaaauacaaAAGUAGAUGu 2 11 415 435 [ce6:IV:3373331-3373351:+] 0.5077 134 0 -11.43 -0.1102 MIMAT0011458 cel-miR-2218b* 177103 vha-19 agagugAUGUUUGAUGUUUAAa ||| || ||||||| uucuugUACCAAAAACAAAUUa 2 17 321 342 [ce6:IV:3373237-3373258:+] 0.4244 156 7 -8.23 -1.1389 MIMAT0011463 cel-miR-2221 177103 vha-19 ugaucgccagaccauAGUGAAc |||||| aauucucccuauuuuUCACUUu 2 8 297 318 [ce6:IV:3373213-3373234:+] 0.4325 120 6 -5.09 -0.1047 MIMAT0000039 cel-miR-67 177103 vha-19 agAUGAGAAAGAUCCUCCAACACu |::|:|||:| |||||| ugUGUUUUUUUU----UGUUGUGa 2 23 433 452 [ce6:IV:3373349-3373368:+] 0.5077 121 6 -14.27 -0.2649 MIMAT0000059 cel-miR-86 177103 vha-19 cugacaccguuucguAAGUGAAu ||||||| uaauucucccuauuuUUCACUUu 2 9 296 318 [ce6:IV:3373212-3373234:+] 0.4325 140 7 -6.29 -1.1132 MIMAT0000285 cel-miR-230 177103 vha-19 agaggaccagcguguUGAUUAUg ||||||| aucccccagaaauuuACUAAUAu 2 9 352 374 [ce6:IV:3373268-3373290:+] 0.5077 140 7 -8.78 -1.2138 MIMAT0000287 cel-miR-232 177103 vha-19 aguggcgUCAA-UUC-UACGUAAAu | || ||| ||||||| auguauaACUUGAAGUCUGCAUUUu 2 17 513 537 [ce6:IV:3373429-3373453:+] 0.5000 146 7 -9.56 -0.9205 MIMAT0000697 cel-miR-355 177103 vha-19 guaucgaguccGAUUUUGUUu | ||||||| uuuucuuguacCAAAAACAAa 2 11 319 339 [ce6:IV:3373235-3373255:+] 0.4244 142 7 -6.78 -1.0366 MIMAT0000700 cel-miR-358 177103 vha-19 cuggaacugucccUAUGGUUa :|||||| cacuuuuuuucuuGUACCAAa 2 9 313 333 [ce6:IV:3373229-3373249:+] 0.4325 124 6 -8.45 -0.1823 MIMAT0000749 cel-lsy-6 177103 vha-19 gcuUUACGCAGA-GUAUGUUUu ||||: | ||||||| uguAAUGUAAAUAAAUACAAAa 2 19 406 427 [ce6:IV:3373322-3373343:+] 0.5077 145 7 -10.00 -1.2193 MIMAT0004220 cel-miR-785 177103 vha-19 agauguguuuuguuAAGUGAAu ||||||| aauucucccuauuuUUCACUUu 2 9 297 318 [ce6:IV:3373213-3373234:+] 0.4325 140 7 -8.53 -1.1132

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score vha-19 RAID00051225 cel-miR-785-3p miRNA MIMAT0004220 vha-19 mRNA 177103 CLIP-seq//Prediction 0.6308 vha-19 RAID01119516 cel-lsy-6-3p miRNA MIMAT0000749 vha-19 mRNA 177103 CLIP-seq//Prediction 0.6308 vha-19 RAID02370815 cel-miR-796 miRNA MIMAT0004231 vha-19 mRNA 177103 CLIP-seq//Prediction 0.6308 vha-19 RAID02420120 cel-miR-355-5p miRNA MIMAT0000697 vha-19 mRNA 177103 CLIP-seq//Prediction 0.6308 vha-19 RAID02858287 cel-miR-230-3p miRNA MIMAT0000285 vha-19 mRNA 177103 Prediction 0.1828 vha-19 RAID03023272 cel-miR-86-5p miRNA MIMAT0000059 vha-19 mRNA 177103 CLIP-seq//Prediction 0.6478 vha-19 RAID03185291 cel-miR-1-3p miRNA MIMAT0000003 vha-19 mRNA 177103 CLIP-seq 0.5483 vha-19 RAID03270740 cel-miR-232-3p miRNA MIMAT0000287 vha-19 mRNA 177103 Prediction 0.1828 vha-19 RAID03664233 cel-miR-358-3p miRNA MIMAT0000700 vha-19 mRNA 177103 Prediction 0.1828 vha-19 RAID03865344 cel-miR-67-3p miRNA MIMAT0000039 vha-19 mRNA 177103 CLIP-seq//Prediction 0.6308