iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114005

Ensembl Protein ID

Sb01g033210.1

UniProt Accession

C5WXK8; C5WXK8_SORBI

Genbank Protein ID

EER94734.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G346300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g033210	Sb01g033210.1	Sb01g033210.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-27	94.2	279	311
UBD/Beta-Prp	5.90e-43	147.9	272	484

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDl 30
           gHt +v++++f +   +ll+s+s D++ik+WD+
   Q: 279  GHTKGVSAIRFfPKygHLLLSASMDCKIKIWDV 311
           8*********995555889*************7 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdl.etgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
            cvh + gh++ v +++f+p +g+ l+s+s d  i++wd+  +++c++ t  gh+++v+ ++++ dg+ + s+++Dr ++ Wd +tg+++ t++ g
   Q: 272  RCVHEWVGHTKGVSAIRFFPkYGHLLLSASMDCKIKIWDVlGSRTCMR-TYMGHSKAVRDISFSNDGSKFLSAGYDRNIQYWDTETGQVISTFSTG 366
           677778888888888888877777888888888888887535777777.78888888888888887788888888888888888888888888777 PP
   S: 179  htdsvyslsfdsngke.lvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavl 273
           + ++v +l+ d+++++ l++g  d+++  wd+++g++ +++  h   v+ + f +n+ r+v+ s+D+s+r+W      ++k ++ ++ +++++ +l
   Q: 367  KVPYVVKLNPDEDKQHiLLAGMSDKKIVQWDMKSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIAL 462
           777777777666664415677777888888888888888888888888888888888888888888888888777777788888888777777777 PP
   S: 274  sfgdnvlvlgsedskvniwklk 295
           +++ n l++ s d+++ i++ k
   Q: 463  HPNSNWLAAQSLDNQILIYSTK 484
           8888877777777777777754 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDLLQSSYAP DGASSPEDSA AASSPDSSPL RLPSKSAAPA VDDTALALSS AASAARPLDP 60
SLHLVAFNPT ADQLWAPILG PQHPHAPISS ASGNRNHKLG HVEDAAVLPF LFDEQYNTFH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCTTGAGCA GAAACCCTAG CCCTAGATCC CCCACCATGG ATCTGCTCCA GTCCTCTTAC 60
GCGCCGGACG GCGCCTCGTC TCCGGAGGAC TCGGCGGCCG CGTCCTCGCC GGATTCCTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR002469--Peptidase_S9B_N
IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

sbi:SORBI_01g033210

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000473	Aegilops tauschii	88.64	0.00e+00	972.00
IUUC-Aml-002243	Ailuropoda melanoleuca	46.94	1.00e-91	328.00
IUUC-Atr-002502	Amborella trichopoda	74.73	0.00e+00	804.00
IUUC-Apl-003885	Anas platyrhynchos	50.66	2.00e-147	515.00
IUUC-Aca-004854	Anolis carolinensis	35.71	7.00e-82	296.00
IUUC-Aly-006158	Arabidopsis lyrata	70.27	0.00e+00	786.00
IUUC-Ath-007474	Arabidopsis thaliana	71.82	0.00e+00	776.00
IUUC-Ago-007726	Ashbya gossypii	39.71	2.00e-68	251.00
IUUC-Acl-008220	Aspergillus clavatus	42.18	7.00e-116	410.00
IUUC-Afl-008473	Aspergillus flavus	41.43	3.00e-112	398.00
IUUC-Afu-008773	Aspergillus fumigatus	42.29	3.00e-117	414.00
IUUC-Ani-009323	Aspergillus nidulans	39.51	1.00e-99	356.00
IUUC-Ang-009851	Aspergillus niger	41.32	3.00e-114	405.00
IUUC-Aor-009950	Aspergillus oryzae	41.43	3.00e-112	398.00
IUUC-Ate-010372	Aspergillus terreus	41.25	5.00e-115	407.00
IUUC-Ame-011660	Astyanax mexicanus	50.96	7.00e-148	516.00
IUUC-Bgr-012230	Blumeria graminis	39.09	1.00e-106	379.00
IUUC-Bta-012568	Bos taurus	50.67	7.00e-147	513.00
IUUC-Bci-013646	Botrytis cinerea	52.41	7.00e-108	383.00
IUUC-Bdi-014199	Brachypodium distachyon	90.73	0.00e+00	988.00
IUUC-Bol-015695	Brassica oleracea	72.58	0.00e+00	796.00
IUUC-Bra-017923	Brassica rapa	71.83	0.00e+00	823.00
IUUC-Cel-018535	Caenorhabditis elegans	39.06	1.00e-113	402.00
IUUC-Cja-019071	Callithrix jacchus	50.67	9.00e-147	513.00
IUUC-Cfa-020559	Canis familiaris	50.48	2.00e-146	512.00
IUUC-Cpo-022356	Cavia porcellus	51.05	5.00e-147	513.00
IUUC-Cre-022594	Chlamydomonas reinhardtii	48.96	1.00e-89	321.00
IUUC-Csa-023125	Chlorocebus sabaeus	50.86	7.00e-147	513.00
IUUC-Cho-024676	Choloepus hoffmanni	58.93	4.00e-136	477.00
IUUC-Cin-025229	Ciona intestinalis	49.61	9.00e-144	502.00
IUUC-Csv-025868	Ciona savignyi	66.30	2.00e-35	139.00
IUUC-Cgl-026739	Colletotrichum gloeosporioides	47.83	2.00e-95	342.00
IUUC-Cne-026885	Cryptococcus neoformans	44.18	2.00e-126	445.00
IUUC-Dre-027631	Danio rerio	52.38	4.00e-152	530.00
IUUC-Dno-029815	Dasypus novemcinctus	63.91	9.00e-134	469.00
IUUC-Dor-031143	Dipodomys ordii	62.50	2.00e-129	455.00
IUUC-Dse-031520	Dothistroma septosporum	47.83	2.00e-98	351.00
IUUC-Dme-032050	Drosophila melanogaster	46.69	2.00e-142	498.00
IUUC-Ete-032866	Echinops telfairi	48.76	2.00e-140	491.00
IUUC-Eca-033384	Equus caballus	50.29	6.00e-145	506.00
IUUC-Eeu-034471	Erinaceus europaeus	40.57	1.00e-96	346.00
IUUC-Fca-035727	Felis catus	50.67	5.00e-147	513.00
IUUC-Fal-036774	Ficedula albicollis	50.85	7.00e-150	523.00
IUUC-Fox-037951	Fusarium oxysporum	51.59	1.00e-107	382.00
IUUC-Fso-038287	Fusarium solani	52.77	5.00e-107	380.00
IUUC-Gmo-039670	Gadus morhua	51.44	1.00e-150	525.00
IUUC-Ggr-039764	Gaeumannomyces graminis	48.75	1.00e-103	369.00
IUUC-Gga-040293	Gallus gallus	50.86	3.00e-150	524.00
IUUC-Gac-042159	Gasterosteus aculeatus	51.61	5.00e-149	520.00
IUUC-Gma-043701	Glycine max	72.43	0.00e+00	769.00
IUUC-Ggo-044864	Gorilla gorilla	50.86	7.00e-147	513.00
IUUC-Hsa-046602	Homo sapiens	50.86	7.00e-147	513.00
IUUC-Itr-047985	Ictidomys tridecemlineatus	63.93	3.00e-135	473.00
IUUC-Kpa-049318	Komagataella pastoris	46.73	4.00e-91	327.00
IUUC-Lch-049796	Latimeria chalumnae	45.40	1.00e-120	426.00
IUUC-Lpe-051153	Leersia perrieri	89.86	0.00e+00	1004.00
IUUC-Loc-052467	Lepisosteus oculatus	51.43	2.00e-149	521.00
IUUC-Lma-053107	Leptosphaeria maculans	51.30	9.00e-106	376.00
IUUC-Laf-053787	Loxodonta africana	50.67	4.00e-148	517.00
IUUC-Mcc-055706	Macaca mulatta	50.67	6.00e-147	513.00
IUUC-Meu-056757	Macropus eugenii	60.30	2.00e-116	412.00
IUUC-Mor-057079	Magnaporthe oryzae	50.72	1.00e-105	375.00
IUUC-Mpo-057533	Magnaporthe poae	50.14	1.00e-104	372.00
IUUC-Mtr-057950	Medicago truncatula	72.51	0.00e+00	793.00
IUUC-Mla-058910	Melampsora laricipopulina	45.38	2.00e-137	481.00
IUUC-Mga-059366	Meleagris gallopavo	50.86	8.00e-150	522.00
IUUC-Mvi-060349	Microbotryum violaceum	57.31	7.00e-121	427.00
IUUC-Mmr-061209	Microcebus murinus	50.86	7.00e-149	520.00
IUUC-Mdo-062118	Monodelphis domestica	50.29	2.00e-148	518.00
IUUC-Mmu-063173	Mus musculus	50.86	6.00e-147	513.00
IUUC-Mac-065109	Musa acuminata	75.46	0.00e+00	776.00
IUUC-Mpu-066659	Mustela putorius furo	50.67	5.00e-147	513.00
IUUC-Mlu-067029	Myotis lucifugus	51.05	9.00e-147	512.00
IUUC-Nfi-068334	Neosartorya fischeri	42.23	8.00e-118	416.00
IUUC-Ncr-068675	Neurospora crassa	48.71	3.00e-92	331.00
IUUC-Nle-070113	Nomascus leucogenys	50.86	5.00e-147	513.00
IUUC-Opr-070685	Ochotona princeps	48.75	2.00e-144	504.00
IUUC-Ont-071680	Oreochromis niloticus	52.19	1.00e-151	529.00
IUUC-Oan-073573	Ornithorhynchus anatinus	49.49	1.00e-134	471.00
IUUC-Ocu-074074	Oryctolagus cuniculus	50.86	8.00e-149	519.00
IUUC-Oba-075625	Oryza barthii	90.77	0.00e+00	998.00
IUUC-Obr-076510	Oryza brachyantha	90.77	0.00e+00	1012.00
IUUC-Ogl-077275	Oryza glaberrima	90.77	0.00e+00	998.00
IUUC-Ogu-078563	Oryza glumaepatula	90.77	0.00e+00	997.00
IUUC-Oin-079898	Oryza indica	94.07	0.00e+00	769.00
IUUC-Olo-081080	Oryza longistaminata	90.10	0.00e+00	890.00
IUUC-Oni-083121	Oryza nivara	90.59	0.00e+00	996.00
IUUC-Opu-083329	Oryza punctata	91.10	0.00e+00	1001.00
IUUC-Oru-084807	Oryza rufipogon	89.92	0.00e+00	889.00
IUUC-Osa-086039	Oryza sativa	90.78	0.00e+00	1000.00
IUUC-Ola-087149	Oryzias latipes	52.30	2.00e-152	531.00
IUUC-Olu-087627	Ostreococcus lucimarinus	48.46	2.00e-138	484.00
IUUC-Oga-088359	Otolemur garnettii	50.86	5.00e-147	513.00
IUUC-Oar-089390	Ovis aries	50.67	2.00e-146	511.00
IUUC-Ptr-090894	Pan troglodytes	50.86	7.00e-147	513.00
IUUC-Pan-092476	Papio anubis	50.67	6.00e-147	513.00
IUUC-Psi-093527	Pelodiscus sinensis	48.98	2.00e-132	465.00
IUUC-Pno-094771	Phaeosphaeria nodorum	50.72	1.00e-104	372.00
IUUC-Ppa-095386	Physcomitrella patens	68.98	0.00e+00	780.00
IUUC-Pfo-096139	Poecilia formosa	50.86	1.00e-149	522.00
IUUC-Pab-097838	Pongo abelii	50.11	4.00e-124	437.00
IUUC-Pop-099962	Populus trichocarpa	74.12	0.00e+00	806.00
IUUC-Pca-100876	Procavia capensis	54.97	2.00e-110	392.00
IUUC-Ppe-101777	Prunus persica	72.02	0.00e+00	795.00
IUUC-Pva-102418	Pteropus vampyrus	50.67	4.00e-146	510.00
IUUC-Pgr-103456	Puccinia graminis	49.54	1.00e-145	508.00
IUUC-Ptt-103731	Puccinia triticina	47.43	2.00e-132	465.00
IUUC-Pte-104386	Pyrenophora teres	50.89	3.00e-103	367.00
IUUC-Pyt-104560	Pyrenophora triticirepentis	50.89	7.00e-103	366.00
IUUC-Rno-105694	Rattus norvegicus	49.71	2.00e-139	488.00
IUUC-Sce-106339	Saccharomyces cerevisiae	38.14	2.00e-74	272.00
IUUC-Sha-106709	Sarcophilus harrisii	50.29	1.00e-147	515.00
IUUC-Sja-107817	Schizosaccharomyces japonicus	38.09	1.00e-105	376.00
IUUC-Spo-108331	Schizosaccharomyces pombe	49.27	2.00e-101	362.00
IUUC-Ssl-108530	Sclerotinia sclerotiorum	54.79	4.00e-96	344.00
IUUC-Smo-109326	Selaginella moellendorffii	59.39	0.00e+00	626.00
IUUC-Sit-110446	Setaria italica	96.85	0.00e+00	1032.00
IUUC-Sly-111330	Solanum lycopersicum	70.65	0.00e+00	775.00
IUUC-Stu-112610	Solanum tuberosum	68.84	0.00e+00	780.00
IUUC-Sar-113065	Sorex araneus	44.89	3.00e-32	132.00
IUUC-Sre-114988	Sporisorium reilianum	46.29	5.00e-136	477.00
IUUC-Ssc-115760	Sus scrofa	50.67	6.00e-147	513.00
IUUC-Tgu-116493	Taeniopygia guttata	50.67	3.00e-151	527.00
IUUC-Tru-118489	Takifugu rubripes	51.62	6.00e-150	523.00
IUUC-Tsy-119332	Tarsius syrichta	50.86	6.00e-149	520.00
IUUC-Tni-120202	Tetraodon nigroviridis	49.71	6.00e-142	496.00
IUUC-Tca-121429	Theobroma cacao	69.90	0.00e+00	811.00
IUUC-Tre-122162	Trichoderma reesei	53.91	3.00e-110	391.00
IUUC-Tvi-122500	Trichoderma virens	53.33	2.00e-109	389.00
IUUC-Tae-125557	Triticum aestivum	89.53	0.00e+00	986.00
IUUC-Tur-126554	Triticum urartu	89.49	0.00e+00	982.00
IUUC-Tme-126919	Tuber melanosporum	44.13	2.00e-122	431.00
IUUC-Tbe-127968	Tupaia belangeri	47.81	1.00e-134	472.00
IUUC-Ttr-129215	Tursiops truncatus	50.48	4.00e-145	507.00
IUUC-Uma-129622	Ustilago maydis	46.35	3.00e-135	474.00
IUUC-Vda-129750	Verticillium dahliae	52.75	5.00e-109	387.00
IUUC-Vpa-130617	Vicugna pacos	50.29	2.00e-143	501.00
IUUC-Vvi-131238	Vitis vinifera	70.87	0.00e+00	803.00
IUUC-Xtr-131865	Xenopus tropicalis	51.33	5.00e-148	516.00
IUUC-Xma-133627	Xiphophorus maculatus	51.24	2.00e-150	524.00
IUUC-Yli-134390	Yarrowia lipolytica	50.29	5.00e-103	367.00
IUUC-Zma-135925	Zea mays	98.25	0.00e+00	1036.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence