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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Cel-018241
UUCD1 version UUC-CaE-00328
Ensembl Protein ID C04F6.4a.1
UniProt Accession Q11176; Q86GT5; WDR1_CAEEL
Genbank Protein ID AAK11613.1; CCD63029.1; CCD63030.1
Protein Name Actin-interacting protein 1; Uncoordinated protein 78
Genbank Nucleotide ID AF324437; FO080344; FO080344
Gene Name unc-78; C04F6.4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00006810 C04F6.4a.1 C04F6.4a.1
WBGene00006810 C04F6.4b.1 C04F6.4b.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Protein-protein Interaction
iRefIndexMentha
Protein 3D Structure
PDBMMDB
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.10e-39 132.1 238 275
UBD/Beta-Prp 1.60e-58 198.5 54 276
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
    H++sv++l + +d t ++s+s D+tik+W++ t +++k
   Q: 238 HSGSVFGLTWsPDgTKIASASADKTIKIWNVATLKVEK 275
    ***********999*****************9998876 PP
   


   UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseD..rtikvwdlstgkcvhtlkghedsvls 99
    + ++h+++ t+ k sp++ ++a+g g +++wd+t+ + ++ +++v+++++++++k ++ ++e r+ +v+ ++tg+ l+g+ + s
   Q: 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHilKTTIPVFSGPVKDISWDSESKRIAAVGEGreRFGHVFLFDTGTSNGNLTGQARAMNS 152
    5578999999999***********************977653445589999************99999999889************************* PP
   S: 100 lsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl......tgghtdsvyslsfdsn 191
    ++f ps+ +++sGs+d+t+ +++ + + + t+ +h+++v +v+++pdg+l++s + D+t+ l++ g+ + +h +sv l+++++
   Q: 153 VDFKPSRpFRIISGSDDNTVAIFEGPPFKFKS-TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFeddslkNVAHSGSVFGLTWSPD 250
    *****99899********************99.***********************************6666666666666775569************ PP
   S: 192 gkelvsgsldgtvklwdlqtgecvrt 217
    g+ ++s+s d+t+k+w++ t ++ +t
   Q: 251 GTKIASASADKTIKIWNVATLKVEKT 276
    ******************99887766 PP
   

Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description



     Belongs to the WD repeat AIP1 family.
Belongs to the WD repeat AIP1 family.
Protein Sequence
(Fasta)
MSEFSQTALF PSLPRTARGT AVVLGNTPAG DKIQYCNGTS VYTVPVGSLT DTEIYTEHSH 60
QTTVAKTSPS GYYCASGDVH GNVRIWDTTQ TTHILKTTIP VFSGPVKDIS WDSESKRIAA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Cel-018241|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGTTTGATTT TATTGATTTT CTTCCTTCGA TCTTTTGGAT TCCTGCTCAA TTTTTACAAT 60
TTTTGCAGAA TGTCGGAATT CTCTCAAACC GCATTGTTCC CGTCTTTGCC TCGCACTGCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Cel-018241|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0009--Actin-binding
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0042643--C:actomyosin, actin portion
GO:0030864--C:cortical actin cytoskeleton
GO:0030016--C:myofibril
GO:0016528--C:sarcoplasm
GO:0003779--F:actin binding
GO:0051015--F:actin filament binding
GO:0040011--P:locomotion
GO:0071689--P:muscle thin filament assembly
GO:0030837--P:negative regulation of actin filament polymerization
GO:0030836--P:positive regulation of actin filament depolymerization
GO:0040012--P:regulation of locomotion
GO:0045214--P:sarcomere organization
GO:0030240--P:skeletal muscle thin filament assembly

KEGG cel:CELE_C04F6.4
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Acl-008262 Aspergillus clavatus 31.99 7.00e-92 330.00
IUUC-Afl-008471 Aspergillus flavus 28.85 1.00e-64 239.00
IUUC-Afu-008989 Aspergillus fumigatus 33.69 1.00e-84 305.00
IUUC-Aor-009908 Aspergillus oryzae 33.86 4.00e-89 320.00
IUUC-Ate-010580 Aspergillus terreus 32.84 9.00e-91 328.00
IUUC-Dor-030633 Dipodomys ordii 40.53 6.00e-117 413.00
IUUC-Kpa-049183 Komagataella pastoris 31.80 2.00e-80 291.00
IUUC-Lch-050428 Latimeria chalumnae 39.61 6.00e-127 446.00
IUUC-Loc-052096 Lepisosteus oculatus 36.44 1.00e-107 382.00
IUUC-Nfi-068550 Neosartorya fischeri 33.23 8.00e-94 336.00
IUUC-Pma-094396 Petromyzon marinus 39.10 1.00e-125 442.00
IUUC-Pca-100257 Procavia capensis 56.47 2.00e-26 112.00
IUUC-Pte-104365 Pyrenophora teres 34.82 5.00e-94 337.00
IUUC-Pyt-104689 Pyrenophora triticirepentis 34.98 2.00e-98 351.00
IUUC-Sce-106383 Saccharomyces cerevisiae 31.28 4.00e-68 251.00
IUUC-Sja-107688 Schizosaccharomyces japonicus 36.30 2.00e-108 385.00
IUUC-Sre-114900 Sporisorium reilianum 35.45 1.00e-98 352.00
IUUC-Tsy-119172 Tarsius syrichta 51.72 8.00e-71 259.00
IUUC-Tvi-122528 Trichoderma virens 32.69 5.00e-95 340.00
Created Date 25-Jun-2017

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