iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135341

Ensembl Protein ID

Zm00001d040768_T001

UniProt Accession

A0A1D6MSU7; A0A1D6MSU7_MAIZE

Genbank Protein ID

ONM31995.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

CM007649

Gene Name

ZEAMMB73_Zm00001d040768

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d040768	Zm00001d040768_T001	Zm00001d040768_T001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-13	50.6	344	382

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH ++v +++   ++  l+sGs Dgti+vW++ tg++lk
   Q: 344  GHMSPVKSISVeiTGQWLASGSCDGTIRVWEVETGRCLK 382
           89******9998877899*******************97 PP

Organism

Zea mays

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGHNDGEHEH EGDDLSADDS SWSDGVWSED DDEETLSFED SGSGSDGESH EAAVAEESDS 60
SEDEVAPRNT VGDVPLEWYK DEEHIGYDID GRKIKKRDRE GRIEAYLRNA DDAKNWRKIY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCATTATCAA AGTCATGGAA ACTGTTTGCT CTTTGCCAGT GGCTCGGCCC ATCCCTCGCC 60
GGTTAGCAAC GCGCAGCGAA AGTCCCTGCC GCCTAAAACC CTAGCCCCCG CCTCTACCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	58.56	0.00e+00	677.00
IUUC-Aml-001507	Ailuropoda melanoleuca	37.40	3.00e-121	429.00
IUUC-Atr-003141	Amborella trichopoda	65.19	2.00e-163	568.00
IUUC-Apl-003545	Anas platyrhynchos	38.34	4.00e-79	288.00
IUUC-Aly-005649	Arabidopsis lyrata	57.70	0.00e+00	794.00
IUUC-Ath-007625	Arabidopsis thaliana	56.60	0.00e+00	775.00
IUUC-Ago-007958	Ashbya gossypii	36.49	2.00e-129	456.00
IUUC-Acl-008344	Aspergillus clavatus	37.66	1.00e-112	400.00
IUUC-Afl-008616	Aspergillus flavus	35.98	3.00e-116	412.00
IUUC-Afu-009083	Aspergillus fumigatus	36.44	1.00e-108	387.00
IUUC-Ani-009365	Aspergillus nidulans	36.34	2.00e-114	405.00
IUUC-Ang-009796	Aspergillus niger	35.85	6.00e-113	401.00
IUUC-Aor-010015	Aspergillus oryzae	35.98	3.00e-116	412.00
IUUC-Ate-010537	Aspergillus terreus	35.63	6.00e-120	424.00
IUUC-Ame-011767	Astyanax mexicanus	40.20	3.00e-61	227.00
IUUC-Bgr-012286	Blumeria graminis	38.25	1.00e-126	447.00
IUUC-Bta-013569	Bos taurus	42.06	6.00e-90	324.00
IUUC-Bci-013820	Botrytis cinerea	36.58	5.00e-116	411.00
IUUC-Bdi-014895	Brachypodium distachyon	78.39	0.00e+00	1041.00
IUUC-Bol-016099	Brassica oleracea	51.86	0.00e+00	674.00
IUUC-Bra-017174	Brassica rapa	51.78	0.00e+00	681.00
IUUC-Cel-018201	Caenorhabditis elegans	32.75	7.00e-83	301.00
IUUC-Cja-019009	Callithrix jacchus	42.93	8.00e-86	311.00
IUUC-Cfa-020173	Canis familiaris	36.42	3.00e-122	432.00
IUUC-Cpo-021796	Cavia porcellus	41.20	7.00e-87	314.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	44.52	2.00e-157	548.00
IUUC-Csa-023440	Chlorocebus sabaeus	41.11	4.00e-92	332.00
IUUC-Cin-025782	Ciona intestinalis	41.01	4.00e-90	325.00
IUUC-Csv-026352	Ciona savignyi	42.64	1.00e-87	317.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	38.87	1.00e-64	240.00
IUUC-Cne-027004	Cryptococcus neoformans	38.22	2.00e-134	472.00
IUUC-Cme-027242	Cyanidioschyzon merolae	32.40	5.00e-95	341.00
IUUC-Dre-028658	Danio rerio	42.49	2.00e-149	522.00
IUUC-Dno-028883	Dasypus novemcinctus	41.47	2.00e-89	322.00
IUUC-Dor-031031	Dipodomys ordii	39.14	2.00e-89	322.00
IUUC-Dse-031443	Dothistroma septosporum	34.45	9.00e-112	397.00
IUUC-Dme-031786	Drosophila melanogaster	38.81	1.00e-136	480.00
IUUC-Eca-033677	Equus caballus	33.62	2.00e-97	350.00
IUUC-Eeu-035310	Erinaceus europaeus	41.31	2.00e-93	335.00
IUUC-Fca-035888	Felis catus	38.30	8.00e-129	453.00
IUUC-Fal-037438	Ficedula albicollis	40.86	1.00e-64	240.00
IUUC-Fox-037973	Fusarium oxysporum	37.31	8.00e-130	457.00
IUUC-Fso-038187	Fusarium solani	36.39	2.00e-127	449.00
IUUC-Gmo-039114	Gadus morhua	38.30	2.00e-77	283.00
IUUC-Ggr-039746	Gaeumannomyces graminis	36.61	2.00e-131	462.00
IUUC-Gga-040631	Gallus gallus	54.77	6.00e-62	230.00
IUUC-Gac-042582	Gasterosteus aculeatus	38.95	2.00e-80	293.00
IUUC-Gma-044215	Glycine max	60.23	0.00e+00	827.00
IUUC-Ggo-045587	Gorilla gorilla	40.97	6.00e-92	331.00
IUUC-Hsa-046319	Homo sapiens	40.97	5.00e-92	332.00
IUUC-Hvu-047526	Hordeum vulgare	71.52	0.00e+00	969.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	41.44	6.00e-90	324.00
IUUC-Kpa-049221	Komagataella pastoris	36.30	9.00e-119	420.00
IUUC-Lch-049640	Latimeria chalumnae	40.34	5.00e-149	521.00
IUUC-Lpe-051135	Leersia perrieri	63.43	0.00e+00	766.00
IUUC-Loc-051930	Lepisosteus oculatus	42.16	2.00e-149	521.00
IUUC-Lma-053290	Leptosphaeria maculans	37.39	8.00e-116	410.00
IUUC-Laf-053903	Loxodonta africana	40.50	3.00e-81	295.00
IUUC-Mcc-055471	Macaca mulatta	40.74	5.00e-92	331.00
IUUC-Meu-056190	Macropus eugenii	42.09	2.00e-89	322.00
IUUC-Mor-057135	Magnaporthe oryzae	36.82	6.00e-125	441.00
IUUC-Mpo-057475	Magnaporthe poae	35.92	2.00e-122	432.00
IUUC-Mtr-058689	Medicago truncatula	60.87	0.00e+00	822.00
IUUC-Mla-059149	Melampsora laricipopulina	37.36	3.00e-123	435.00
IUUC-Mga-059645	Meleagris gallopavo	48.03	5.00e-30	124.00
IUUC-Mvi-060485	Microbotryum violaceum	37.61	3.00e-116	413.00
IUUC-Mmr-061674	Microcebus murinus	40.84	2.00e-82	299.00
IUUC-Mdo-062973	Monodelphis domestica	38.85	9.00e-94	337.00
IUUC-Mmu-064180	Mus musculus	35.58	1.00e-90	327.00
IUUC-Mac-064535	Musa acuminata	64.44	0.00e+00	971.00
IUUC-Mpu-066406	Mustela putorius furo	40.93	1.00e-93	337.00
IUUC-Mlu-067795	Myotis lucifugus	39.56	2.00e-127	449.00
IUUC-Nfi-068516	Neosartorya fischeri	35.57	4.00e-103	368.00
IUUC-Ncr-068767	Neurospora crassa	36.96	2.00e-115	409.00
IUUC-Opr-071084	Ochotona princeps	44.62	6.00e-58	217.00
IUUC-Ont-071614	Oreochromis niloticus	39.59	1.00e-136	479.00
IUUC-Oba-075980	Oryza barthii	64.68	0.00e+00	793.00
IUUC-Obr-076799	Oryza brachyantha	73.75	0.00e+00	1025.00
IUUC-Ogl-077134	Oryza glaberrima	75.51	0.00e+00	1000.00
IUUC-Ogu-078655	Oryza glumaepatula	66.85	0.00e+00	844.00
IUUC-Oin-079654	Oryza indica	75.97	0.00e+00	976.00
IUUC-Olo-080706	Oryza longistaminata	64.68	0.00e+00	796.00
IUUC-Ome-081716	Oryza meridionalis	82.98	0.00e+00	697.00
IUUC-Oni-082508	Oryza nivara	66.58	0.00e+00	845.00
IUUC-Opu-083707	Oryza punctata	64.55	0.00e+00	811.00
IUUC-Oru-084453	Oryza rufipogon	64.68	0.00e+00	796.00
IUUC-Osa-085811	Oryza sativa	75.37	0.00e+00	998.00
IUUC-Ola-087361	Oryzias latipes	41.15	1.00e-91	330.00
IUUC-Oga-088015	Otolemur garnettii	39.29	3.00e-136	478.00
IUUC-Oar-090058	Ovis aries	50.62	4.00e-46	179.00
IUUC-Ptr-090631	Pan troglodytes	41.57	4.00e-54	204.00
IUUC-Pan-092306	Papio anubis	41.28	2.00e-92	332.00
IUUC-Pma-094622	Petromyzon marinus	40.24	6.00e-142	497.00
IUUC-Pno-094794	Phaeosphaeria nodorum	34.23	2.00e-107	383.00
IUUC-Ppa-095528	Physcomitrella patens	54.53	1.00e-155	542.00
IUUC-Pfo-096682	Poecilia formosa	40.49	6.00e-141	494.00
IUUC-Pab-097939	Pongo abelii	39.58	2.00e-76	279.00
IUUC-Pop-099043	Populus trichocarpa	62.26	0.00e+00	768.00
IUUC-Pca-100333	Procavia capensis	34.27	5.00e-89	321.00
IUUC-Ppe-102078	Prunus persica	57.61	0.00e+00	767.00
IUUC-Pgr-103525	Puccinia graminis	37.27	1.00e-113	404.00
IUUC-Ptt-103929	Puccinia triticina	37.19	2.00e-109	390.00
IUUC-Pte-104029	Pyrenophora teres	37.34	3.00e-126	445.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	37.20	1.00e-125	443.00
IUUC-Rno-105248	Rattus norvegicus	35.49	3.00e-89	322.00
IUUC-Sce-106381	Saccharomyces cerevisiae	36.33	6.00e-121	427.00
IUUC-Sha-106519	Sarcophilus harrisii	42.21	7.00e-95	340.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	36.35	4.00e-119	421.00
IUUC-Spo-108071	Schizosaccharomyces pombe	35.85	1.00e-111	396.00
IUUC-Smo-109604	Selaginella moellendorffii	57.53	0.00e+00	754.00
IUUC-Sit-110551	Setaria italica	68.27	0.00e+00	892.00
IUUC-Sly-110970	Solanum lycopersicum	72.59	2.00e-149	521.00
IUUC-Stu-112593	Solanum tuberosum	61.46	0.00e+00	838.00
IUUC-Sar-113123	Sorex araneus	50.27	7.00e-51	193.00
IUUC-Sbi-113945	Sorghum bicolor	82.14	0.00e+00	1117.00
IUUC-Sre-115188	Sporisorium reilianum	36.70	1.00e-119	423.00
IUUC-Ssc-115352	Sus scrofa	39.35	2.00e-138	485.00
IUUC-Tru-117685	Takifugu rubripes	42.69	7.00e-149	520.00
IUUC-Tni-119982	Tetraodon nigroviridis	40.91	3.00e-137	481.00
IUUC-Tca-121664	Theobroma cacao	60.33	0.00e+00	865.00
IUUC-Tre-122229	Trichoderma reesei	37.91	1.00e-116	413.00
IUUC-Tvi-122576	Trichoderma virens	37.40	2.00e-111	395.00
IUUC-Tae-125703	Triticum aestivum	73.04	0.00e+00	942.00
IUUC-Tur-126781	Triticum urartu	58.72	0.00e+00	663.00
IUUC-Tme-127080	Tuber melanosporum	38.29	1.00e-133	469.00
IUUC-Ttr-128514	Tursiops truncatus	40.89	7.00e-89	321.00
IUUC-Uma-129556	Ustilago maydis	36.71	2.00e-116	413.00
IUUC-Vda-129715	Verticillium dahliae	36.81	4.00e-124	438.00
IUUC-Vvi-131211	Vitis vinifera	61.83	0.00e+00	845.00
IUUC-Xma-133883	Xiphophorus maculatus	40.44	2.00e-136	479.00
IUUC-Yli-134438	Yarrowia lipolytica	36.73	1.00e-109	390.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence