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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105721
Ensembl Protein ID ENSRNOP00000057423.2
UniProt Accession D4AE50; D4AE50_RAT
Genbank Protein ID EDL98652.1
Protein Name Nuclear transcription factor, X-box-binding 1; RCG55154
Genbank Nucleotide ID AABR07048017
Gene Name Nfx1; rCG_55154
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000009015.7 ENSRNOT00000060692.4 ENSRNOP00000057423.2
ENSRNOG00000009015.7 ENSRNOT00000060691.3 ENSRNOP00000057422.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 88.30 0.00e+00 1929.00 IUUC-Hsa-046870
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAEAPPVSGT FKFNTDAAEF IPQERKNSGL NCGTQRRLDS NRIGRRNYSS SPPCHLPRHI 60
PYDDVSAVHQ HGYASGSKPK SPQGFFQSSN KSLKNHGLQN QPWQKLRNEK HQNRIKKAQG 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105721|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ACTGTATCTT CGGGCGGCAC CACCCCCTTG GCCGTCTACA CGCGCGTAGG AACGAATAGT 60
CTCTGGACGC CGGAAATCCG GGACACGTGA CCAGGTGACA GCCCTCGCTC GGTGGCGGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105721|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR034078--NFX1_fam
IPR001374--R3H_dom
IPR034076--R3H_NF-X1
IPR019786--Zinc_finger_PHD-type_CS
IPR000967--Znf_NFX1
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
PROSITE

PS51061--R3H
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS50089--ZF_RING_2
Pfam

PF01424--R3H
PF01422--zf-NF-X1
SMART

SM00393--R3H
SM00438--ZnF_NFX
Gene Ontology

GO:0005829--C:cytosol
GO:0005730--C:nucleolus
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0003723--F:RNA binding
GO:0000977--F:RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078--F:transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270--F:zinc ion binding
GO:0045347--P:negative regulation of MHC class II biosynthetic process
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter
KEGG rno:313166
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000224 Aegilops tauschii 39.32 5.00e-85 308.00
IUUC-Aml-001716 Ailuropoda melanoleuca 88.04 0.00e+00 1933.00
IUUC-Atr-002895 Amborella trichopoda 38.99 1.00e-134 474.00
IUUC-Apl-003650 Anas platyrhynchos 59.17 0.00e+00 1184.00
IUUC-Aca-004313 Anolis carolinensis 58.71 0.00e+00 1253.00
IUUC-Aly-006515 Arabidopsis lyrata 37.79 7.00e-131 461.00
IUUC-Ath-007056 Arabidopsis thaliana 36.79 4.00e-130 459.00
IUUC-Ago-007777 Ashbya gossypii 32.11 2.00e-85 310.00
IUUC-Acl-008068 Aspergillus clavatus 36.13 8.00e-81 295.00
IUUC-Afl-008499 Aspergillus flavus 36.86 1.00e-46 180.00
IUUC-Afu-009016 Aspergillus fumigatus 34.78 3.00e-109 390.00
IUUC-Ani-009477 Aspergillus nidulans 35.98 4.00e-114 406.00
IUUC-Ang-009605 Aspergillus niger 35.98 1.00e-116 414.00
IUUC-Aor-010166 Aspergillus oryzae 35.52 4.00e-52 199.00
IUUC-Ame-010640 Astyanax mexicanus 62.23 0.00e+00 975.00
IUUC-Bgr-012024 Blumeria graminis 33.42 1.00e-100 361.00
IUUC-Bta-012789 Bos taurus 86.70 0.00e+00 1908.00
IUUC-Bci-013768 Botrytis cinerea 35.22 2.00e-113 404.00
IUUC-Bdi-014723 Brachypodium distachyon 39.80 8.00e-121 428.00
IUUC-Bol-015394 Brassica oleracea 38.01 6.00e-135 475.00
IUUC-Bra-017266 Brassica rapa 38.14 4.00e-133 469.00
IUUC-Cel-018668 Caenorhabditis elegans 40.32 1.00e-152 534.00
IUUC-Cja-019769 Callithrix jacchus 86.03 0.00e+00 1873.00
IUUC-Cfa-020727 Canis familiaris 88.25 0.00e+00 1927.00
IUUC-Cpo-021741 Cavia porcellus 87.76 0.00e+00 1952.00
IUUC-Csa-024054 Chlorocebus sabaeus 88.12 0.00e+00 1923.00
IUUC-Cho-025031 Choloepus hoffmanni 84.31 0.00e+00 1328.00
IUUC-Cin-025164 Ciona intestinalis 46.99 0.00e+00 656.00
IUUC-Csv-026260 Ciona savignyi 46.43 0.00e+00 694.00
IUUC-Cgl-026451 Colletotrichum gloeosporioides 36.07 2.00e-81 297.00
IUUC-Cne-026923 Cryptococcus neoformans 35.75 2.00e-79 290.00
IUUC-Dre-028227 Danio rerio 65.57 0.00e+00 1035.00
IUUC-Dno-029830 Dasypus novemcinctus 83.36 0.00e+00 1820.00
IUUC-Dor-030436 Dipodomys ordii 85.38 0.00e+00 1108.00
IUUC-Dse-031485 Dothistroma septosporum 35.29 6.00e-106 379.00
IUUC-Dme-031875 Drosophila melanogaster 43.81 6.00e-164 571.00
IUUC-Eca-033415 Equus caballus 83.49 0.00e+00 1033.00
IUUC-Eeu-034528 Erinaceus europaeus 86.95 0.00e+00 996.00
IUUC-Fca-036238 Felis catus 91.86 0.00e+00 1309.00
IUUC-Fal-037124 Ficedula albicollis 61.06 0.00e+00 1250.00
IUUC-Fox-038075 Fusarium oxysporum 41.46 8.00e-05 42.70
IUUC-Fso-038310 Fusarium solani 34.83 3.00e-97 350.00
IUUC-Gmo-039506 Gadus morhua 63.69 0.00e+00 957.00
IUUC-Ggr-039984 Gaeumannomyces graminis 36.56 2.00e-120 427.00
IUUC-Gga-040674 Gallus gallus 73.86 0.00e+00 1099.00
IUUC-Gac-041416 Gasterosteus aculeatus 64.25 0.00e+00 971.00
IUUC-Gma-043625 Glycine max 38.20 2.00e-129 457.00
IUUC-Ggo-045017 Gorilla gorilla 87.91 0.00e+00 1920.00
IUUC-Hsa-046870 Homo sapiens 88.30 0.00e+00 1932.00
IUUC-Hvu-047466 Hordeum vulgare 38.60 3.00e-80 293.00
IUUC-Itr-048703 Ictidomys tridecemlineatus 78.91 0.00e+00 664.00
IUUC-Kpa-049244 Komagataella pastoris 30.69 5.00e-72 266.00
IUUC-Lch-050376 Latimeria chalumnae 58.03 0.00e+00 1176.00
IUUC-Lpe-050955 Leersia perrieri 37.00 1.00e-95 344.00
IUUC-Loc-051948 Lepisosteus oculatus 54.29 0.00e+00 1122.00
IUUC-Lma-052950 Leptosphaeria maculans 35.85 3.00e-101 363.00
IUUC-Laf-054206 Loxodonta africana 84.23 0.00e+00 1212.00
IUUC-Mcc-055005 Macaca mulatta 88.04 0.00e+00 1919.00
IUUC-Meu-056120 Macropus eugenii 59.94 0.00e+00 665.00
IUUC-Mor-057238 Magnaporthe oryzae 33.85 6.00e-111 395.00
IUUC-Mpo-057574 Magnaporthe poae 35.39 5.00e-117 415.00
IUUC-Mtr-057823 Medicago truncatula 38.59 3.00e-116 413.00
IUUC-Mla-058822 Melampsora laricipopulina 35.03 7.00e-101 362.00
IUUC-Mga-059785 Meleagris gallopavo 50.62 3.00e-168 585.00
IUUC-Mvi-060543 Microbotryum violaceum 34.64 4.00e-99 356.00
IUUC-Mmr-060611 Microcebus murinus 87.23 0.00e+00 1883.00
IUUC-Mdo-062719 Monodelphis domestica 69.89 0.00e+00 1463.00
IUUC-Mmu-064376 Mus musculus 96.32 0.00e+00 2081.00
IUUC-Mac-064834 Musa acuminata 35.92 2.00e-104 374.00
IUUC-Mpu-066298 Mustela putorius furo 88.56 0.00e+00 1940.00
IUUC-Mlu-067546 Myotis lucifugus 85.61 0.00e+00 1881.00
IUUC-Nfi-068388 Neosartorya fischeri 34.83 7.00e-114 405.00
IUUC-Ncr-068875 Neurospora crassa 34.58 6.00e-104 372.00
IUUC-Nle-069813 Nomascus leucogenys 88.30 0.00e+00 1927.00
IUUC-Opr-070995 Ochotona princeps 77.08 0.00e+00 1340.00
IUUC-Ont-072084 Oreochromis niloticus 66.02 0.00e+00 1027.00
IUUC-Oan-073545 Ornithorhynchus anatinus 56.17 0.00e+00 1132.00
IUUC-Ocu-074092 Oryctolagus cuniculus 83.65 0.00e+00 1847.00
IUUC-Oba-075828 Oryza barthii 38.59 1.00e-101 364.00
IUUC-Obr-076373 Oryza brachyantha 37.45 9.00e-77 281.00
IUUC-Ogl-077043 Oryza glaberrima 40.00 2.00e-112 400.00
IUUC-Ogu-078647 Oryza glumaepatula 39.87 3.00e-110 393.00
IUUC-Oin-079793 Oryza indica 38.75 3.00e-82 299.00
IUUC-Olo-080815 Oryza longistaminata 38.67 8.00e-102 365.00
IUUC-Ome-081650 Oryza meridionalis 39.74 3.00e-113 403.00
IUUC-Oni-082708 Oryza nivara 39.74 7.00e-114 405.00
IUUC-Opu-084078 Oryza punctata 40.27 5.00e-111 395.00
IUUC-Oru-084549 Oryza rufipogon 39.56 8.00e-114 405.00
IUUC-Osa-086095 Oryza sativa 38.06 9.00e-95 341.00
IUUC-Olu-087617 Ostreococcus lucimarinus 35.34 2.00e-11 64.30
IUUC-Oga-088453 Otolemur garnettii 85.80 0.00e+00 1848.00
IUUC-Oar-089769 Ovis aries 86.53 0.00e+00 1898.00
IUUC-Ptr-090803 Pan troglodytes 88.30 0.00e+00 1932.00
IUUC-Pan-092169 Papio anubis 88.04 0.00e+00 1940.00
IUUC-Psi-094065 Pelodiscus sinensis 62.37 0.00e+00 1365.00
IUUC-Pma-094592 Petromyzon marinus 56.32 0.00e+00 867.00
IUUC-Pno-095016 Phaeosphaeria nodorum 29.48 4.00e-15 75.90
IUUC-Ppa-095597 Physcomitrella patens 36.35 1.00e-122 434.00
IUUC-Pfo-096959 Poecilia formosa 62.41 0.00e+00 1045.00
IUUC-Pab-097732 Pongo abelii 93.40 0.00e+00 1247.00
IUUC-Pop-099062 Populus trichocarpa 39.07 8.00e-130 458.00
IUUC-Pca-100219 Procavia capensis 70.90 0.00e+00 1439.00
IUUC-Ppe-101695 Prunus persica 38.41 8.00e-123 435.00
IUUC-Pva-102402 Pteropus vampyrus 80.09 0.00e+00 1695.00
IUUC-Pgr-103317 Puccinia graminis 30.25 4.00e-94 340.00
IUUC-Ptt-103771 Puccinia triticina 30.83 7.00e-85 309.00
IUUC-Pte-104189 Pyrenophora teres 31.25 4.00e-10 60.10
IUUC-Pyt-104801 Pyrenophora triticirepentis 34.89 7.00e-101 362.00
IUUC-Sce-106350 Saccharomyces cerevisiae 30.60 1.00e-81 298.00
IUUC-Sha-106801 Sarcophilus harrisii 69.18 0.00e+00 1469.00
IUUC-Sja-107692 Schizosaccharomyces japonicus 35.32 6.00e-123 435.00
IUUC-Spo-108253 Schizosaccharomyces pombe 37.10 1.00e-119 424.00
IUUC-Ssl-108587 Sclerotinia sclerotiorum 34.96 2.00e-65 243.00
IUUC-Smo-108865 Selaginella moellendorffii 39.10 7.00e-113 401.00
IUUC-Sit-110153 Setaria italica 39.13 8.00e-115 408.00
IUUC-Sly-111638 Solanum lycopersicum 38.49 2.00e-125 443.00
IUUC-Stu-112099 Solanum tuberosum 39.66 5.00e-126 445.00
IUUC-Sar-113030 Sorex araneus 80.82 4.00e-180 625.00
IUUC-Sbi-113944 Sorghum bicolor 38.47 1.00e-117 417.00
IUUC-Sre-115206 Sporisorium reilianum 33.38 1.00e-104 374.00
IUUC-Ssc-115729 Sus scrofa 77.70 0.00e+00 679.00
IUUC-Tgu-117520 Taeniopygia guttata 67.00 0.00e+00 994.00
IUUC-Tru-118487 Takifugu rubripes 65.53 0.00e+00 1019.00
IUUC-Tsy-119363 Tarsius syrichta 79.91 0.00e+00 1686.00
IUUC-Tca-121813 Theobroma cacao 37.80 1.00e-124 441.00
IUUC-Tre-122248 Trichoderma reesei 35.42 3.00e-102 366.00
IUUC-Tvi-122462 Trichoderma virens 36.47 2.00e-110 393.00
IUUC-Tae-123637 Triticum aestivum 39.31 1.00e-112 401.00
IUUC-Tur-126173 Triticum urartu 39.49 1.00e-103 370.00
IUUC-Tme-127213 Tuber melanosporum 36.31 2.00e-116 414.00
IUUC-Tbe-127399 Tupaia belangeri 87.69 0.00e+00 806.00
IUUC-Ttr-128798 Tursiops truncatus 91.53 0.00e+00 898.00
IUUC-Uma-129421 Ustilago maydis 31.76 3.00e-104 373.00
IUUC-Vda-129863 Verticillium dahliae 32.57 5.00e-101 362.00
IUUC-Vvi-131615 Vitis vinifera 37.16 2.00e-137 483.00
IUUC-Xtr-132309 Xenopus tropicalis 58.93 0.00e+00 1178.00
IUUC-Xma-133235 Xiphophorus maculatus 64.44 0.00e+00 1004.00
IUUC-Yli-134536 Yarrowia lipolytica 31.85 2.00e-92 333.00
IUUC-Zma-135358 Zea mays 39.02 1.00e-111 397.00
Created Date 25-Jun-2017

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