iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH++ v+c++   d  +l++Gs D t k+WD+++g+ l
   Q: 77   GHSGAVWCCDIsRDsSRLITGSADQTAKLWDVKSGKEL 114
           8***********77799****************99875 PP

UBD/Beta-Prp

   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           ++ h+ ++t + + ++++ll++  +d+t +vw +++g  l ++ gh+++v+++++s+d++ l+tgs D+t+k+wd+++gk + t+k   + ++s++fs
   Q: 33   MKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFK-FGAPARSVDFS 129
           56678899999999999999999999999999999999999999999999999999999999999999999999999999999999.88899999999 PP
   S: 104  psgdklvsGshdrtirvwdletgqclee..............tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl..tgghtdsvys 185
             gd+l++ + d  +      + + + e                   ++ +n +v+ p ++ +vsG+ D ++r+Wd +tgkll++   + gh+++++s
   Q: 130  V-GDHLAVITTDHFVGTSSAIHVKRIAEdpedqvgdsvlvlqSP-DGKKKINRAVWGPLNQTIVSGGEDAAIRIWDAETGKLLKQSdeEVGHKEAITS 225
           9.77777777788888855555555555699999999*986333.3355788999*******************************99667******* PP
   S: 186  lsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs 241
           l    +  ++++gs+d+t klwd++t + ++t++    +v+ v++sp  +++v g+
   Q: 226  LCKAADDSHFLTGSHDKTAKLWDMRTLTLIKTYTTVV-PVNAVAMSPLLNHVVLGG 280
           *****************************99998754.555566655555555554 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MTIECVNPEG LRFNQMKSSS HQTLETRMRP ILMKGHERPL TFLRYNRNGD LLFSCAKDHT 60
PTVWFADNGE RLGTYRGHSG AVWCCDISRD SSRLITGSAD QTAKLWDVKS GKELFTFKFG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTGTTTCGA GCCCATTACT GCCACGTGGC TCTATTCGGA GTTATTTACC AATGGTACGC 60
TCACCGGTTT AACGATTCAC CACTTAAAGC CCTCAAAATC TCAGAGAACG CTCGCTGATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR027525--eIF3i
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0009506--C:plasmodesma
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

KEGG

ath:AT2G46290

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000115	Aegilops tauschii	42.39	2.00e-55	209.00
IUUC-Aml-001321	Ailuropoda melanoleuca	46.48	1.00e-84	305.00
IUUC-Atr-002468	Amborella trichopoda	70.09	2.00e-87	314.00
IUUC-Apl-003841	Anas platyrhynchos	46.48	6.00e-86	310.00
IUUC-Aca-005123	Anolis carolinensis	45.73	2.00e-87	314.00
IUUC-Aly-005657	Arabidopsis lyrata	90.81	0.00e+00	677.00
IUUC-Ago-008000	Ashbya gossypii	42.34	8.00e-75	273.00
IUUC-Acl-008098	Aspergillus clavatus	42.64	6.00e-74	270.00
IUUC-Afl-008494	Aspergillus flavus	43.50	4.00e-77	280.00
IUUC-Afu-009080	Aspergillus fumigatus	41.74	4.00e-73	267.00
IUUC-Ani-009230	Aspergillus nidulans	43.77	6.00e-76	276.00
IUUC-Aor-010114	Aspergillus oryzae	43.50	4.00e-77	280.00
IUUC-Ate-010285	Aspergillus terreus	42.86	8.00e-76	276.00
IUUC-Ame-011534	Astyanax mexicanus	45.73	7.00e-88	316.00
IUUC-Bgr-012121	Blumeria graminis	41.46	3.00e-71	261.00
IUUC-Bta-013143	Bos taurus	46.65	3.00e-85	307.00
IUUC-Bci-013950	Botrytis cinerea	44.24	5.00e-79	286.00
IUUC-Bdi-015019	Brachypodium distachyon	76.52	5.00e-151	526.00
IUUC-Bol-015709	Brassica oleracea	82.79	3.00e-172	597.00
IUUC-Bra-017760	Brassica rapa	80.86	3.00e-174	604.00
IUUC-Cel-018226	Caenorhabditis elegans	38.27	7.00e-67	246.00
IUUC-Cja-019741	Callithrix jacchus	46.65	8.00e-86	309.00
IUUC-Cfa-021204	Canis familiaris	46.79	4.00e-85	307.00
IUUC-Cpo-021661	Cavia porcellus	46.18	2.00e-84	305.00
IUUC-Cre-022952	Chlamydomonas reinhardtii	50.61	1.00e-98	352.00
IUUC-Csa-024038	Chlorocebus sabaeus	46.65	8.00e-86	309.00
IUUC-Cin-025597	Ciona intestinalis	45.73	1.00e-83	302.00
IUUC-Cgl-026583	Colletotrichum gloeosporioides	44.82	8.00e-77	279.00
IUUC-Cne-026838	Cryptococcus neoformans	40.79	1.00e-76	278.00
IUUC-Cme-027304	Cyanidioschyzon merolae	51.07	8.00e-85	306.00
IUUC-Dre-028567	Danio rerio	45.73	1.00e-88	319.00
IUUC-Dno-029171	Dasypus novemcinctus	45.01	3.00e-84	305.00
IUUC-Dor-030257	Dipodomys ordii	35.39	2.00e-29	122.00
IUUC-Dse-031191	Dothistroma septosporum	46.39	1.00e-80	292.00
IUUC-Dme-031879	Drosophila melanogaster	46.91	3.00e-89	321.00
IUUC-Ete-032336	Echinops telfairi	39.73	1.00e-40	158.00
IUUC-Eca-033259	Equus caballus	46.48	7.00e-85	306.00
IUUC-Eeu-035153	Erinaceus europaeus	41.61	4.00e-23	101.00
IUUC-Fca-036489	Felis catus	46.48	7.00e-85	306.00
IUUC-Fal-037485	Ficedula albicollis	46.18	9.00e-86	309.00
IUUC-Fox-037860	Fusarium oxysporum	44.38	8.00e-77	279.00
IUUC-Fso-038188	Fusarium solani	43.16	1.00e-74	272.00
IUUC-Gmo-039311	Gadus morhua	45.57	3.00e-86	310.00
IUUC-Ggr-040045	Gaeumannomyces graminis	42.51	1.00e-74	272.00
IUUC-Gga-040645	Gallus gallus	45.83	7.00e-85	306.00
IUUC-Gac-042086	Gasterosteus aculeatus	45.73	2.00e-85	308.00
IUUC-Gma-043246	Glycine max	81.40	3.00e-163	566.00
IUUC-Ggo-045578	Gorilla gorilla	46.65	8.00e-86	309.00
IUUC-Hsa-046734	Homo sapiens	46.65	8.00e-86	309.00
IUUC-Hvu-047553	Hordeum vulgare	76.52	2.00e-151	527.00
IUUC-Itr-048467	Ictidomys tridecemlineatus	46.48	9.00e-85	306.00
IUUC-Kpa-049325	Komagataella pastoris	42.81	2.00e-77	281.00
IUUC-Lch-049620	Latimeria chalumnae	45.87	2.00e-78	285.00
IUUC-Lpe-051338	Leersia perrieri	76.04	6.00e-142	495.00
IUUC-Loc-052094	Lepisosteus oculatus	41.28	5.00e-73	267.00
IUUC-Lma-053047	Leptosphaeria maculans	47.55	1.00e-83	302.00
IUUC-Laf-053801	Loxodonta africana	46.42	4.00e-82	296.00
IUUC-Mcc-055498	Macaca mulatta	41.77	2.00e-67	248.00
IUUC-Meu-056729	Macropus eugenii	43.16	5.00e-76	276.00
IUUC-Mor-057025	Magnaporthe oryzae	43.60	9.00e-74	269.00
IUUC-Mpo-057511	Magnaporthe poae	43.90	3.00e-75	274.00
IUUC-Mtr-058051	Medicago truncatula	80.79	1.00e-162	564.00
IUUC-Mla-059061	Melampsora laricipopulina	43.60	3.00e-76	277.00
IUUC-Mga-059229	Meleagris gallopavo	45.90	2.00e-83	301.00
IUUC-Mvi-060399	Microbotryum violaceum	43.79	7.00e-76	276.00
IUUC-Mmr-060764	Microcebus murinus	46.65	8.00e-86	309.00
IUUC-Mdo-062088	Monodelphis domestica	46.04	1.00e-84	305.00
IUUC-Mmu-064304	Mus musculus	46.34	2.00e-85	308.00
IUUC-Mac-065520	Musa acuminata	74.92	2.00e-149	521.00
IUUC-Mpu-066340	Mustela putorius furo	46.48	7.00e-85	306.00
IUUC-Mlu-067111	Myotis lucifugus	46.48	8.00e-85	306.00
IUUC-Nfi-068478	Neosartorya fischeri	41.74	1.00e-73	268.00
IUUC-Ncr-068820	Neurospora crassa	44.51	2.00e-75	275.00
IUUC-Nle-069903	Nomascus leucogenys	46.48	3.00e-85	307.00
IUUC-Opr-070221	Ochotona princeps	45.43	7.00e-83	299.00
IUUC-Ont-071765	Oreochromis niloticus	46.65	7.00e-89	319.00
IUUC-Oan-073660	Ornithorhynchus anatinus	45.05	1.00e-72	265.00
IUUC-Ocu-074039	Oryctolagus cuniculus	46.48	5.00e-85	306.00
IUUC-Oba-075395	Oryza barthii	70.73	7.00e-136	475.00
IUUC-Obr-076334	Oryza brachyantha	72.56	1.00e-141	494.00
IUUC-Ogl-077751	Oryza glaberrima	77.13	1.00e-152	531.00
IUUC-Ogu-078207	Oryza glumaepatula	76.76	5.00e-151	526.00
IUUC-Oin-079878	Oryza indica	76.52	2.00e-151	527.00
IUUC-Olo-080677	Oryza longistaminata	65.97	3.00e-143	500.00
IUUC-Ome-081228	Oryza meridionalis	59.09	1.00e-77	281.00
IUUC-Oni-082411	Oryza nivara	67.99	2.00e-128	450.00
IUUC-Opu-083136	Oryza punctata	77.44	4.00e-153	533.00
IUUC-Oru-084916	Oryza rufipogon	74.48	2.00e-149	521.00
IUUC-Osa-085776	Oryza sativa	77.13	1.00e-152	531.00
IUUC-Ola-087053	Oryzias latipes	46.04	9.00e-87	312.00
IUUC-Olu-087602	Ostreococcus lucimarinus	58.72	3.00e-114	404.00
IUUC-Oga-088154	Otolemur garnettii	46.79	1.00e-85	309.00
IUUC-Oar-089915	Ovis aries	46.48	1.00e-84	305.00
IUUC-Ptr-091124	Pan troglodytes	37.42	3.00e-56	211.00
IUUC-Pan-092035	Papio anubis	46.65	8.00e-86	309.00
IUUC-Psi-094096	Pelodiscus sinensis	47.24	4.00e-50	190.00
IUUC-Pno-094988	Phaeosphaeria nodorum	43.56	1.00e-70	258.00
IUUC-Ppa-095949	Physcomitrella patens	69.82	1.00e-141	494.00
IUUC-Pfo-096101	Poecilia formosa	46.34	1.00e-87	315.00
IUUC-Pab-097726	Pongo abelii	46.65	8.00e-86	309.00
IUUC-Pop-099617	Populus trichocarpa	79.57	1.00e-159	554.00
IUUC-Pca-101014	Procavia capensis	46.65	1.00e-85	308.00
IUUC-Ppe-101320	Prunus persica	82.62	1.00e-165	574.00
IUUC-Pva-102789	Pteropus vampyrus	42.99	2.00e-73	268.00
IUUC-Pgr-103479	Puccinia graminis	42.38	9.00e-77	280.00
IUUC-Ptt-103981	Puccinia triticina	42.38	2.00e-77	281.00
IUUC-Pte-104278	Pyrenophora teres	46.01	3.00e-79	287.00
IUUC-Pyt-104492	Pyrenophora triticirepentis	46.01	3.00e-79	287.00
IUUC-Rno-105867	Rattus norvegicus	43.15	3.00e-69	254.00
IUUC-Sce-106251	Saccharomyces cerevisiae	39.52	4.00e-71	260.00
IUUC-Sha-107039	Sarcophilus harrisii	46.04	8.00e-85	306.00
IUUC-Sja-107758	Schizosaccharomyces japonicus	45.76	7.00e-84	303.00
IUUC-Spo-108314	Schizosaccharomyces pombe	45.43	2.00e-85	308.00
IUUC-Ssl-108478	Sclerotinia sclerotiorum	43.64	3.00e-78	284.00
IUUC-Smo-108728	Selaginella moellendorffii	69.11	4.00e-138	483.00
IUUC-Sit-110801	Setaria italica	75.61	4.00e-149	519.00
IUUC-Sly-111326	Solanum lycopersicum	80.79	2.00e-162	563.00
IUUC-Stu-112458	Solanum tuberosum	82.62	6.00e-165	572.00
IUUC-Sbi-114063	Sorghum bicolor	75.30	2.00e-148	517.00
IUUC-Sre-115096	Sporisorium reilianum	42.82	1.00e-72	265.00
IUUC-Ssc-116080	Sus scrofa	46.65	2.00e-85	307.00
IUUC-Tgu-116988	Taeniopygia guttata	46.18	9.00e-86	309.00
IUUC-Tru-118766	Takifugu rubripes	46.34	5.00e-88	317.00
IUUC-Tni-120197	Tetraodon nigroviridis	46.65	1.00e-88	318.00
IUUC-Tca-121316	Theobroma cacao	80.49	3.00e-161	560.00
IUUC-Tre-122097	Trichoderma reesei	44.07	1.00e-75	275.00
IUUC-Tvi-122442	Trichoderma virens	43.77	2.00e-75	275.00
IUUC-Tae-125800	Triticum aestivum	76.29	2.00e-151	528.00
IUUC-Tur-126334	Triticum urartu	67.68	3.00e-126	443.00
IUUC-Tme-127038	Tuber melanosporum	45.29	1.00e-81	295.00
IUUC-Ttr-128659	Tursiops truncatus	43.29	2.00e-65	241.00
IUUC-Uma-129464	Ustilago maydis	43.07	6.00e-72	263.00
IUUC-Vda-129841	Verticillium dahliae	45.73	2.00e-77	281.00
IUUC-Vvi-131076	Vitis vinifera	79.88	1.00e-159	555.00
IUUC-Xtr-132395	Xenopus tropicalis	46.04	4.00e-87	313.00
IUUC-Xma-133383	Xiphophorus maculatus	46.34	1.00e-87	315.00
IUUC-Yli-134586	Yarrowia lipolytica	42.86	6.00e-69	253.00
IUUC-Zma-135904	Zea mays	74.70	2.00e-148	517.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence