iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113990

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G381700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g039830	Sb02g039830.1	Sb02g039830.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-06	27.9	319	351

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH d  ++ a+ +d + l++G+ D t+++WD+r
   Q: 319  GHLDYSFSSAWhPDgRVLATGNQDTTCRLWDVR 351
           89999*******99999**************97 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEMYLVEDLD LLDDDDEFGG FGVTVGSGTP RPDKQTYDTS AVEYRNGKDM QGIPWERLNY 60
GRNDYRRMRL KEYKNYESLS RSHELLDSEC KQVDRGSTFY DFRFNTRLVK STIVHFQIYY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCGCGACGG CCTCCAGAGT CCAGACCCAG GCTTGCGCTG CTCCTGCCGT CTCCTCCTTC 60
CCAGACGAGG CCGCTCGCCC CGCCGCGCCG CCACTTATTC GATTCGATTC GATCCGGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0043565--F:sequence-specific DNA binding
GO:0001077--F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter

KEGG

sbi:SORBI_02g039710

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000486	Aegilops tauschii	68.14	6.00e-180	622.00
IUUC-Atr-002734	Amborella trichopoda	65.63	2.00e-167	581.00
IUUC-Aly-005521	Arabidopsis lyrata	62.98	1.00e-158	551.00
IUUC-Ath-007611	Arabidopsis thaliana	64.42	1.00e-161	561.00
IUUC-Bdi-015063	Brachypodium distachyon	73.83	1.00e-144	504.00
IUUC-Bol-015183	Brassica oleracea	64.10	5.00e-161	559.00
IUUC-Bra-017403	Brassica rapa	64.82	5.00e-162	563.00
IUUC-Cme-027214	Cyanidioschyzon merolae	41.88	4.00e-54	206.00
IUUC-Gma-044288	Glycine max	63.90	7.00e-163	565.00
IUUC-Hvu-047718	Hordeum vulgare	67.75	2.00e-176	611.00
IUUC-Mtr-058564	Medicago truncatula	65.62	2.00e-165	574.00
IUUC-Mac-065012	Musa acuminata	63.31	1.00e-155	543.00
IUUC-Sit-110668	Setaria italica	79.75	0.00e+00	667.00
IUUC-Sly-111186	Solanum lycopersicum	64.35	1.00e-164	572.00
IUUC-Stu-111950	Solanum tuberosum	64.11	3.00e-165	573.00
IUUC-Tca-121603	Theobroma cacao	61.05	9.00e-165	572.00
IUUC-Tae-124553	Triticum aestivum	69.62	2.00e-176	611.00
IUUC-Tur-126710	Triticum urartu	61.12	6.00e-167	579.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence