iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105878

Ensembl Protein ID

ENSRNOP00000066624.1

UniProt Accession

M0RAR7; M0RAR7_RAT

Genbank Protein ID

ENSRNOP00000066624

Protein Name

Chromobox 4

Genbank Nucleotide ID

AABR07030897

Gene Name

Cbx4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000046207.1	ENSRNOT00000075440.1	ENSRNOP00000066624.1

Annotation

DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	96.15	2.00e-108	390.00	IUUC-Hsa-046374
E3 activity/Other	98.56	1.00e-110	397.00	IUUC-Mmu-063344

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MELPAVGEHV FAVESIEKKR IRKGRVEYLV KWRGWSPKYN TWEPEENILD PRLLIAFQNR 60
ERQEQLMGYR KRGPKPKPLV VQVPTFARRS NVLTGLQDSS ADNRAKLELG TQGKGQGHQY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGCTGC CAGCTGTTGG CGAGCACGTC TTCGCGGTGG AGAGCATCGA GAAGAAGCGG 60
ATCCGCAAGG TAGGGGTGGC GCGCGGGTGG CGGCGCCGAG GCGCGGGAGC GGCGGCGGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome

Interpro

IPR033773--CBX7_C
IPR000953--Chromo/chromo_shadow_dom
IPR017984--Chromo_dom_subgr
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR023779--Chromodomain_CS

PROSITE

PS00598--CHROMO_1
PS50013--CHROMO_2

Pfam

PF17218--CBX7_C
PF00385--Chromo

PRINTS

PR00504--CHROMODOMAIN

SMART

SM00298--CHROMO

Gene Ontology

GO:0016604--C:nuclear body
GO:0035102--C:PRC1 complex
GO:0003682--F:chromatin binding
GO:0003727--F:single-stranded RNA binding
GO:0044212--F:transcription regulatory region DNA binding
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0016925--P:protein sumoylation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001747	Ailuropoda melanoleuca	95.91	2.00e-87	316.00
IUUC-Atr-003112	Amborella trichopoda	52.94	5.00e-11	62.00
IUUC-Apl-003876	Anas platyrhynchos	68.18	8.00e-50	190.00
IUUC-Aca-004445	Anolis carolinensis	59.22	1.00e-51	197.00
IUUC-Aly-006366	Arabidopsis lyrata	53.33	1.00e-11	64.30
IUUC-Ath-006608	Arabidopsis thaliana	53.33	1.00e-11	63.90
IUUC-Ame-010980	Astyanax mexicanus	72.78	4.00e-70	259.00
IUUC-Bta-013216	Bos taurus	95.28	4.00e-110	391.00
IUUC-Bdi-014604	Brachypodium distachyon	39.74	3.00e-12	66.20
IUUC-Bol-015449	Brassica oleracea	55.56	3.00e-12	66.60
IUUC-Bra-017229	Brassica rapa	55.56	2.00e-12	67.00
IUUC-Cja-018821	Callithrix jacchus	90.52	3.00e-98	352.00
IUUC-Cfa-020457	Canis familiaris	83.56	4.00e-79	288.00
IUUC-Cpo-021550	Cavia porcellus	75.89	5.00e-93	335.00
IUUC-Csa-024090	Chlorocebus sabaeus	96.15	4.00e-110	391.00
IUUC-Dre-027769	Danio rerio	57.26	3.00e-69	256.00
IUUC-Dno-028987	Dasypus novemcinctus	91.60	4.00e-69	254.00
IUUC-Eca-033419	Equus caballus	80.86	5.00e-82	297.00
IUUC-Fca-035513	Felis catus	83.33	3.00e-90	325.00
IUUC-Gmo-038639	Gadus morhua	69.94	7.00e-59	221.00
IUUC-Gga-040221	Gallus gallus	54.61	5.00e-133	468.00
IUUC-Gac-042105	Gasterosteus aculeatus	68.00	3.00e-64	239.00
IUUC-Ggo-044433	Gorilla gorilla	80.90	3.00e-91	329.00
IUUC-Hsa-046374	Homo sapiens	96.15	4.00e-110	392.00
IUUC-Hvu-047395	Hordeum vulgare	42.86	6.00e-09	55.10
IUUC-Itr-048523	Ictidomys tridecemlineatus	96.63	1.00e-110	393.00
IUUC-Lch-050606	Latimeria chalumnae	66.67	3.00e-76	279.00
IUUC-Loc-052513	Lepisosteus oculatus	75.13	8.00e-72	263.00
IUUC-Laf-053583	Loxodonta africana	67.40	5.00e-66	243.00
IUUC-Mcc-055070	Macaca mulatta	79.15	1.00e-82	300.00
IUUC-Meu-055954	Macropus eugenii	85.64	3.00e-86	311.00
IUUC-Mga-059417	Meleagris gallopavo	48.64	7.00e-84	304.00
IUUC-Mmr-060774	Microcebus murinus	95.73	2.00e-111	396.00
IUUC-Mdo-062825	Monodelphis domestica	83.26	1.00e-108	387.00
IUUC-Mmu-063344	Mus musculus	98.56	3.00e-112	398.00
IUUC-Mpu-066193	Mustela putorius furo	96.49	1.00e-87	317.00
IUUC-Mlu-067939	Myotis lucifugus	92.61	3.00e-88	318.00
IUUC-Nle-069889	Nomascus leucogenys	95.71	4.00e-35	141.00
IUUC-Ont-071531	Oreochromis niloticus	68.57	1.00e-64	240.00
IUUC-Ocu-074528	Oryctolagus cuniculus	86.29	5.00e-74	271.00
IUUC-Oba-075909	Oryza barthii	37.93	8.00e-12	64.70
IUUC-Obr-076678	Oryza brachyantha	36.59	3.00e-11	63.20
IUUC-Ogl-077833	Oryza glaberrima	37.93	1.00e-11	64.30
IUUC-Ogu-078599	Oryza glumaepatula	37.93	1.00e-11	64.30
IUUC-Oni-082564	Oryza nivara	37.93	9.00e-12	64.70
IUUC-Opu-083875	Oryza punctata	37.93	9.00e-12	64.70
IUUC-Oru-084465	Oryza rufipogon	37.93	8.00e-12	64.70
IUUC-Osa-085995	Oryza sativa	37.93	1.00e-11	64.30
IUUC-Ola-086942	Oryzias latipes	69.94	2.00e-61	230.00
IUUC-Oga-088509	Otolemur garnettii	93.99	7.00e-117	414.00
IUUC-Oar-089503	Ovis aries	83.53	5.00e-86	311.00
IUUC-Ptr-091416	Pan troglodytes	96.15	4.00e-110	392.00
IUUC-Pan-092459	Papio anubis	96.15	3.00e-110	392.00
IUUC-Psi-093173	Pelodiscus sinensis	70.39	2.00e-49	189.00
IUUC-Pfo-096252	Poecilia formosa	67.43	1.00e-63	237.00
IUUC-Pab-097991	Pongo abelii	77.22	8.00e-73	267.00
IUUC-Pca-100744	Procavia capensis	55.46	4.00e-134	471.00
IUUC-Pte-104285	Pyrenophora teres	45.71	3.00e-03	35.00
IUUC-Sha-107505	Sarcophilus harrisii	85.00	2.00e-87	316.00
IUUC-Spo-108161	Schizosaccharomyces pombe	27.54	1.00e-03	39.30
IUUC-Sit-110439	Setaria italica	53.33	2.00e-11	63.20
IUUC-Sly-111669	Solanum lycopersicum	47.83	7.00e-12	65.50
IUUC-Stu-112251	Solanum tuberosum	39.44	3.00e-12	66.20
IUUC-Ssc-115965	Sus scrofa	96.63	3.00e-110	392.00
IUUC-Tgu-117367	Taeniopygia guttata	63.93	3.00e-70	259.00
IUUC-Tru-118259	Takifugu rubripes	68.39	3.00e-64	239.00
IUUC-Tni-120129	Tetraodon nigroviridis	70.11	4.00e-66	245.00
IUUC-Tae-124603	Triticum aestivum	44.29	3.00e-09	55.80
IUUC-Ttr-128982	Tursiops truncatus	80.72	4.00e-86	311.00
IUUC-Vvi-131282	Vitis vinifera	46.81	6.00e-11	62.00
IUUC-Xtr-132586	Xenopus tropicalis	70.10	5.00e-77	281.00
IUUC-Xma-133102	Xiphophorus maculatus	36.89	2.00e-66	246.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence