iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin.

Protein Sequence
(Fasta)

MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF 60
PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV GLEELRLKRM VVTDESLDLL 120

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Nucleotide Sequence
(Fasta)

GTTCCATTAC AGAGTTTCTG GTTTTTTTTG GCTTGCGTGA TCTCTCTCTT CTCTTCTCTC 60
TCTCACTCAT CCAAATCTTT GATCATCTCA TCATCATTGG ACTTGAAGCT AACTCCAGAG 120

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Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0539--Nucleus
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like

SMART

SM00256--FBOX

Gene Ontology

GO:0005634--C:nucleus
GO:0019005--C:SCF ubiquitin ligase complex
GO:0010011--F:auxin binding
GO:0000822--F:inositol hexakisphosphate binding
GO:0009734--P:auxin-activated signaling pathway
GO:0071249--P:cellular response to nitrate
GO:0006952--P:defense response
GO:0048527--P:lateral root development
GO:0010152--P:pollen maturation
GO:0080022--P:primary root development
GO:0016567--P:protein ubiquitination
GO:0048443--P:stamen development

KEGG

ath:AT1G12820

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002877	Amborella trichopoda	66.09	0.00e+00	799.00
IUUC-Aly-006006	Arabidopsis lyrata	97.40	0.00e+00	1107.00
IUUC-Bol-016270	Brassica oleracea	88.75	0.00e+00	1038.00
IUUC-Bra-017683	Brassica rapa	88.39	0.00e+00	1029.00
IUUC-Mtr-058259	Medicago truncatula	74.00	0.00e+00	887.00
IUUC-Mac-064750	Musa acuminata	64.30	0.00e+00	754.00
IUUC-Ppa-095626	Physcomitrella patens	54.07	0.00e+00	626.00
IUUC-Ptt-103834	Puccinia triticina	27.80	2.00e-03	37.40

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence