iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007060

UUCD1 version

UUC-ArT-01372

Ensembl Protein ID

AT2G18670.1

UniProt Accession

Q9ZV51; Q8L900; ATL56_ARATH

Genbank Protein ID

AAY57593.1; AAD08936.1; AEC06791.1; AAK96603.1; AAM19965.1; AAM67030.1

Protein Name

RING-H2 finger protein ATL56; RING-type E3 ubiquitin transferase ATL56

Genbank Nucleotide ID

DQ059107; AC005724; CP002685; AY052699; AY098955; AY088712

Gene Name

ATL56; At2g18670; MSF3.5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G18670	AT2G18670.1	AT2G18670.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	7.90e-07	30.4	110	152

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C +C++ f++g   + lp CgHvfh++C+  w        k+ +CP+Cr
   Q: 110  CVVCFDGFRQGqwCRNLPgCGHVFHRKCVDTW------LLKASTCPICR 152
           ********66665556678*************......999*******8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MPPTNNYRIS GEPPSTTPSH PPPKPKTRIL SLFLVGVIMF SIFFLFLVLI GIASVLILPL 60
LLSSLHRHHR RRRRNRRQES SDGLSSRFVK KLPQFKFSEP STYTRYESDC VVCFDGFRQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACGTTACT GTCACTAAAT GAAATCTATT TTTCTTTCTT AAATTTTGCT CTGACAAATA 60
TTTTTGATTG CGTCATTTTC TACTTTGGAA ATGTCTTTGA TTTAGCATTT CAGTTCGCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G18670

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002642	Amborella trichopoda	45.65	2.00e-17	80.90
IUUC-Aly-006401	Arabidopsis lyrata	94.48	1.00e-72	264.00
IUUC-Bol-015094	Brassica oleracea	76.73	5.00e-39	152.00
IUUC-Bra-017657	Brassica rapa	80.66	4.00e-53	199.00
IUUC-Mtr-058539	Medicago truncatula	49.44	8.00e-23	99.00
IUUC-Mac-064764	Musa acuminata	50.00	2.00e-16	77.40
IUUC-Ogl-076996	Oryza glaberrima	38.03	2.00e-13	67.80
IUUC-Pop-099663	Populus trichocarpa	57.50	3.00e-20	90.50
IUUC-Ppe-101566	Prunus persica	55.68	4.00e-23	100.00
IUUC-Pgr-103421	Puccinia graminis	34.44	6.00e-11	58.90
IUUC-Sit-110293	Setaria italica	50.00	3.00e-14	69.70
IUUC-Sly-111913	Solanum lycopersicum	42.35	2.00e-17	80.90
IUUC-Tca-121196	Theobroma cacao	56.70	2.00e-26	110.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence