iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSORLG00000017356.1	ENSORLT00000021707.1	ENSORLP00000021706.1
ENSORLG00000017356.1	ENSORLT00000021709.1	ENSORLP00000021708.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-11	44.5	83	112

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWD 29
           H++++t++++ ++ +++v+++ D + +vW 
   Q: 83   HSGRITGIDWaPEsNRIVTCASDRNAYVWT 112
           9**********888***************6 PP

Organism

Oryzias latipes

Protein Sequence
(Fasta)

VSTAQSPRTH TGQKIRLNKS KAGTSLPSIK QNMSLHSFGL EPLSCHAWNK DRTQIALSPN 60
NNVVNIYEKK ANDWVKTEEL TEHSGRITGI DWAPESNRIV TCASDRNAYV WTRKDGVWKP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGGAGACCA GCATTCGTGT CGACTGCCCA GAGTCCACGA ACACACACAG GTAAGAACCA 60
CAGGTAATGA CTCTGCTTTT CCAGCTGGTA TGGGTTTCAA AGTGTCCGTC TCACTGGAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005885--C:Arp2/3 protein complex
GO:0034314--P:Arp2/3 complex-mediated actin nucleation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002844	Amborella trichopoda	45.09	6.00e-54	204.00
IUUC-Ago-007966	Ashbya gossypii	40.06	3.00e-67	248.00
IUUC-Ame-010874	Astyanax mexicanus	81.23	2.00e-180	624.00
IUUC-Bgr-012192	Blumeria graminis	42.90	1.00e-86	312.00
IUUC-Cre-022590	Chlamydomonas reinhardtii	35.71	1.00e-35	142.00
IUUC-Dre-027781	Danio rerio	80.34	2.00e-180	624.00
IUUC-Dse-031574	Dothistroma septosporum	46.03	2.00e-88	318.00
IUUC-Gmo-038608	Gadus morhua	78.71	4.00e-174	603.00
IUUC-Gac-042536	Gasterosteus aculeatus	80.05	0.00e+00	662.00
IUUC-Gma-043227	Glycine max	40.32	1.00e-78	286.00
IUUC-Hvu-047456	Hordeum vulgare	32.02	7.00e-18	83.20
IUUC-Loc-051844	Lepisosteus oculatus	78.21	2.00e-171	594.00
IUUC-Lma-053109	Leptosphaeria maculans	45.45	6.00e-91	327.00
IUUC-Ont-072444	Oreochromis niloticus	84.55	0.00e+00	646.00
IUUC-Olo-081055	Oryza longistaminata	40.24	5.00e-67	247.00
IUUC-Pno-095031	Phaeosphaeria nodorum	44.23	1.00e-88	319.00
IUUC-Pfo-097144	Poecilia formosa	85.35	1.00e-177	615.00
IUUC-Ppe-101681	Prunus persica	40.64	1.00e-78	286.00
IUUC-Sja-107792	Schizosaccharomyces japonicus	46.58	2.00e-92	332.00
IUUC-Spo-108053	Schizosaccharomyces pombe	44.05	8.00e-89	320.00
IUUC-Tru-118343	Takifugu rubripes	82.87	0.00e+00	638.00
IUUC-Vda-129706	Verticillium dahliae	45.86	9.00e-92	330.00
IUUC-Xtr-131770	Xenopus tropicalis	63.81	3.00e-150	524.00
IUUC-Xma-134294	Xiphophorus maculatus	83.94	2.00e-175	607.00
IUUC-Yli-134471	Yarrowia lipolytica	43.77	1.00e-81	296.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence