iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099169

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_552313; POPTR_0002s17630g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s17630	POPTR_0002s17630.1	POPTR_0002s17630.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	6.20e-26	91.4	263	332

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 3    peeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           ++ f CpI+ ++M+dPv ++sG+t++rs+Iekwla+g++ cP+t++pl+ + l Pn+tlr+ i++w ++n
   Q: 263  LQSFYCPITRDVMEDPVETSSGQTFERSAIEKWLADGHEMCPLTMTPLDTSILRPNKTLRQSIEEWKDRN 332
           689***************************************************************9988 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MMALDVITSA CSFPADECLS QIVEGMMEVV YAANNVLVKK ESFKEFSVYL ERVAPVLKEL 60
NKKDISHSRS LNSAIEILNQ EIKAAKQLTA DCTKRNKVYL LMNSRTIIKN LEDIAREISR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTTATACTT TCCCCGCAAA ATCCGTGCAT TTTCCCGGAA AATCGATCCT TCTAGTGAAC 60
TTTCATGGGC ATTTACTACC TGAACAGGTC CTTCTCCCTC TCCCTCTGCT TCAAAGATAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0002s17630g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002671	Amborella trichopoda	54.53	0.00e+00	1041.00
IUUC-Gma-042663	Glycine max	64.07	0.00e+00	1210.00
IUUC-Mtr-058231	Medicago truncatula	65.11	0.00e+00	1240.00
IUUC-Ppa-095511	Physcomitrella patens	42.26	0.00e+00	726.00
IUUC-Ppe-101683	Prunus persica	73.62	0.00e+00	1330.00
IUUC-Smo-109528	Selaginella moellendorffii	41.87	0.00e+00	701.00
IUUC-Sly-111419	Solanum lycopersicum	61.91	0.00e+00	1156.00
IUUC-Stu-112717	Solanum tuberosum	62.79	0.00e+00	1214.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence