iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G06880	AT3G06880.1	AT3G06880.1
AT3G06880	AT3G06880.4	AT3G06880.4
AT3G06880	AT3G06880.3	AT3G06880.3
AT3G06880	AT3G06880.2	AT3G06880.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-09	37.3	1025	1062

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           H++ vtc+++  ++  ++sGs D+ti+vW + +g+l++
   Q: 1025 HKSTVTCFSLseTGECVLSGSADKTIRVWQIVKGKLEC 1062
           9*********8655889*************99998876 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAYLSSSQST FISCSENSSL DSILVSINVY ILGVISDPEA WISLKQKCIT LLSIEEDNTL 60
FEFSSEHSAL SNLYWGIDSI EASIHPECSE EKTSRLRNSE RMLQMPALLD EQGTTTSGVP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAACTTCAC TTCCTCTCTC ATCTTATCCC ATAGATAAAA CCATCCAAAC TTGTGTGCAA 60
CAAAGTATGT GAAAATGGCT TACCTTTCAT CTTCTCAATC GACTTTTATC TCATGTAGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR016346--Guanine_nucleotide-bd_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0007165--P:signal transduction

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000535	Aegilops tauschii	47.99	0.00e+00	749.00
IUUC-Atr-002498	Amborella trichopoda	42.11	0.00e+00	634.00
IUUC-Aly-006263	Arabidopsis lyrata	79.27	0.00e+00	1900.00
IUUC-Bdi-014493	Brachypodium distachyon	46.07	0.00e+00	669.00
IUUC-Bol-016092	Brassica oleracea	77.94	0.00e+00	1987.00
IUUC-Bra-016701	Brassica rapa	76.77	0.00e+00	2006.00
IUUC-Gma-043180	Glycine max	45.73	0.00e+00	1074.00
IUUC-Hvu-047807	Hordeum vulgare	49.59	6.00e-130	456.00
IUUC-Lpe-051180	Leersia perrieri	47.28	0.00e+00	746.00
IUUC-Mtr-057703	Medicago truncatula	52.20	0.00e+00	867.00
IUUC-Mac-064996	Musa acuminata	48.54	0.00e+00	780.00
IUUC-Oba-075721	Oryza barthii	48.20	0.00e+00	773.00
IUUC-Obr-076233	Oryza brachyantha	47.75	0.00e+00	758.00
IUUC-Ogl-077542	Oryza glaberrima	48.93	0.00e+00	773.00
IUUC-Ogu-078363	Oryza glumaepatula	43.30	0.00e+00	775.00
IUUC-Oin-079050	Oryza indica	48.20	0.00e+00	770.00
IUUC-Olo-080332	Oryza longistaminata	45.08	0.00e+00	679.00
IUUC-Ome-081772	Oryza meridionalis	48.20	0.00e+00	762.00
IUUC-Oni-082467	Oryza nivara	48.20	0.00e+00	770.00
IUUC-Opu-083132	Oryza punctata	48.55	0.00e+00	773.00
IUUC-Oru-084836	Oryza rufipogon	40.88	0.00e+00	794.00
IUUC-Osa-085493	Oryza sativa	48.20	0.00e+00	772.00
IUUC-Pop-099360	Populus trichocarpa	47.44	0.00e+00	1097.00
IUUC-Ppe-102099	Prunus persica	54.69	0.00e+00	902.00
IUUC-Smo-109666	Selaginella moellendorffii	26.20	1.00e-55	211.00
IUUC-Sit-110371	Setaria italica	46.86	0.00e+00	772.00
IUUC-Sly-111793	Solanum lycopersicum	53.02	0.00e+00	870.00
IUUC-Stu-112760	Solanum tuberosum	43.42	0.00e+00	990.00
IUUC-Sbi-114833	Sorghum bicolor	46.03	0.00e+00	729.00
IUUC-Tca-121753	Theobroma cacao	54.12	0.00e+00	984.00
IUUC-Tae-124317	Triticum aestivum	47.87	0.00e+00	747.00
IUUC-Tur-126343	Triticum urartu	47.87	0.00e+00	750.00
IUUC-Vvi-130975	Vitis vinifera	47.02	0.00e+00	1060.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence