iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.1__1727__AT1G15750.2	fgenesh2_kg.1__1727__AT1G15750.2	fgenesh2_kg.1__1727__AT1G15750.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.00e-22	76.9	461	499
UBD/Beta-Prp	7.30e-47	160.6	420	750

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  ++  l +++++dD+tikvWD  tgv+ 
   Q: 461  HVGGVNDISFstPNkQLcVITCGDDKTIKVWDAATGVKR 499
           999*******98664334799***********9999875 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstg 84
           ++ v +spd+sl+ +++ ++ +++++++ g       ++  h ++v++++fs   k    +t+++D+tikvwd  tg
   Q: 420  VNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDmrqHLEIDAHVGGVNDISFSTPNKqlCVITCGDDKTIKVWDAATG 496
           455778**********************9998333334589***********88777899***************** PP
   S: 85   kcvhtlkghedsvlslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl.. 157
              ht++ghe+ v+s+  +   + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg  l+s+++  
   Q: 497  VKRHTFEGHEAPVYSVCPHYkeNIQFIFSTALDGKIKAWLYDNMGSRVDYDAPG-RWCTTMAYSADGTRLFSCGTsk 572
           ***************855544388***************999877777566655.5999999***9*9999986522 PP
   S: 158  Dr..tvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght..dnvksvrf 230
           D+  ++  W+ + g + rt +g h++s   ++fd ++++ +++++d ++k+wd+ t + + +  g    +   ++rf
   Q: 573  DGesFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTVQLLTAIDGDGglQASPRIRF 649
           43336777999**********************************************99999988774455566999 PP
   S: 231  spnderlvsgssDgsiriW.dlrsgdllktlqlhn............................ssvisvavlsfgdn 278
            +++ +l++ + +++i+i  +++   ll+t+++                               +v+s+++++ + +
   Q: 650  NKEGSLLAVSGNENVIKIMaNSDGLRLLHTFENISsesskpainsiaaaaaaaatsaghadrsANVVSIQGMNGDSR 726
           9*****************88999**********99889999988887888877777777777777777777666655 PP
   S: 279  vl......vlgsedskvniwklkk 296
           ++      ++ ++++k +iwkl++
   Q: 727  NMvdvkpvITEESNDKSKIWKLTE 750
           556777777777899999999986 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD LKVFSTFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGAAGAGAGA GAAAATCCCT TTCTCTAGAT AGAGAGAGAG AGAAGAAGAA GCTTTTTTAT 60
TTTCTTTCTT TCAAGTTTCC TTTTTTCGAT AGAGAGAAAA AGAGTCCAAA AATCAATCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0009867--P:jasmonic acid mediated signaling pathway
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0010072--P:primary shoot apical meristem specification
GO:0009733--P:response to auxin
GO:0010051--P:xylem and phloem pattern formation

KEGG

aly:ARALYDRAFT_471773

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002737	Amborella trichopoda	77.27	0.00e+00	1738.00
IUUC-Ath-007021	Arabidopsis thaliana	99.38	0.00e+00	2193.00
IUUC-Bol-015359	Brassica oleracea	96.20	0.00e+00	2127.00
IUUC-Bra-016893	Brassica rapa	96.73	0.00e+00	2117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence