iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s06570	POPTR_0006s06570.2	POPTR_0006s06570.2
POPTR_0006s06570	POPTR_0006s06570.1	POPTR_0006s06570.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-22	80.4	459	491
UBD/Beta-Prp	7.20e-46	157.8	397	633

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDl 30
           H++sv++laf  ++  l +v+++dD ti+vWD 
   Q: 459  HNGSVNDLAFsyPNkQLaIVTCGDDRTIRVWDA 491
           9*********997654469*************6 PP

UBD/Beta-Prp

   S: 35   kvwdvttgkllrsl.sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvht.lk..ghedsvlslsfsp.sg.dklvsGshdrtir 119
           kvwd  +  l +sl s+ +a v+ v +spdg ++  + + ++++v+++  g+ ++  l+  +h+ sv +l+fs  ++   +v+ ++drtir
   Q: 397  KVWDHNSRALQASLsSDYTASVNRVAWSPDGTLFGVAYSKHIVHVYSYHGGDDIRNhLQidAHNGSVNDLAFSYpNKqLAIVTCGDDRTIR 487
           8*************99999************999999999*********887766413366**********9877665899********** PP
   S: 120  vwdletgqcleetlsghdgvvncvvvhpdg..nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgt....v 204
           vwd   g+ l   + gh++ v +v+ h ++  + ++s ++D++++ W   ++    +      +s + ++++ +g++l s+++++     +
   Q: 488  VWDAVAGTRLF-NFLGHEAPVYSVCPHHKEniQFIFSTAADGKIKAWLYDNMGSRVDYDA-PGNSSTTMAYSADGTRLFSCGTNKEgeshL 576
           **********9.99999999999999887757889************9977777777776.889999999************997533337 PP
   S: 205  klwdlqtgecvrtlng.htdnvksvrfspnderlvsgssDgsiriWdlrsgdllktl 260
             w+ ++g + rt+ng  ++ v  v+f+  ++r++ + ++  i++Wd+++ +ll+++
   Q: 577  VEWNESEGAVKRTYNGlAKRSVGAVKFDTTKNRFLAAIDEFMIKFWDMDNVNLLTSI 633
           789999**********8899***************************9999988776 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLEEEK FKETVHRLEQ ESGFYFNMRY FEEMVTNGEW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKRDR AKAVEILVKD LKVFAAFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTCTCTAT AAATACCAGT AGAGTTCATA GAGAGAGAAA CCACAAAATT CAACAACTTG 60
AACTAGAGAG AGAAAGTTCA AAAAAGCTGT GAAACGACAT ATCGTCCGTT CTCTCTCCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011044--Quino_amine_DH_bsu
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

KEGG

pop:POPTR_0006s06570g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002737	Amborella trichopoda	78.14	0.00e+00	1745.00
IUUC-Aly-006463	Arabidopsis lyrata	74.40	0.00e+00	1639.00
IUUC-Ath-007634	Arabidopsis thaliana	74.49	0.00e+00	1655.00
IUUC-Bol-015812	Brassica oleracea	73.88	0.00e+00	1686.00
IUUC-Bra-016964	Brassica rapa	73.37	0.00e+00	1667.00
IUUC-Ppe-101506	Prunus persica	84.85	0.00e+00	1900.00
IUUC-Sly-111451	Solanum lycopersicum	75.09	0.00e+00	1722.00
IUUC-Stu-112409	Solanum tuberosum	78.16	0.00e+00	1764.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence