iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121628

Ensembl Protein ID

EOY25943

UniProt Accession

A0A061GFX3; A0A061GFX3_THECC

Genbank Protein ID

EOY25941.1; EOY25942.1; EOY25943.1; EOY25944.1

Protein Name

TOPLESS-related 1 isoform 1

Genbank Nucleotide ID

CM001884; CM001884; CM001884; CM001884

Gene Name

TCM_027305

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_027305	EOY25945	EOY25945
TCM_027305	EOY25943	EOY25943

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-21	76.5	463	498
UBD/Beta-Prp	4.40e-43	148.5	428	701

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           H ++v++laf  ++  l +++++dD+tikvWD +tg
   Q: 463  HVGGVNDLAFslPNkQLcVITCGDDKTIKVWDASTG 498
           999*********774334699***********8776 PP

UBD/Beta-Prp

   S: 19   spdksllatgsrdgtikvwdvttgkllrsl...sgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp..sgdklvsG 112
           +p++sl+ +++ ++ +++++++ g+ +r+      h ++v+++ fs   k    +t+++D+tikvwd stg    +++ghe+ v+s+  +   + +++ s+
   Q: 428  HPEGSLFGVAYSRHIVQIYSYHGGDDVRQHleiDAHVGGVNDLAFSLPNKqlCVITCGDDKTIKVWDASTGAKQFIFEGHEAPVYSVCPHHkeNIQFIFST 528
           89**********************99654323389**********966555899********************************888776666****** PP
   S: 113  shdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdl 209
             d  i+ w  ++     + +++  ++ ++++++ dg  l+s+++    D+++  W+ + g + rt +g  ++s   ++fd ++++ +++++d ++k+wd+
   Q: 529  AVDGKIKAWLYDNMGSRVDYEAP-GRWCTTMAYSADGTRLFSCGTskegDSFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 628
           *********88887777645554.5599999999999888888865566999999********************************************** PP
   S: 210  qtgecvrtlnghtdnvks..vrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn..............s 265
            + + + +  +    + s  +rf +++ +l++ + D+ i+i  +++   ll+t+++                +
   Q: 629  DNISLLTSIDADGGLPASprIRFNKDGSLLAVSTNDNGIKILaNSDGMRLLRTMENLSydasraseapkptiN 701
           ****9999999997776533888899****9999*******66444444444433333443666666666652 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD LKVFATFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAATATAAT TTTTCTAGAG AGAGAAAGGG ACAATCTCTG GCTCGCTTGT GTGTGTGTGT 60
GTGTTTTTTT TTCCATTTTT CTAGAGAGAG AAAGCTTCGT ATTTTTGTTC CTCTAAGAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011044--Quino_amine_DH_bsu
IPR011047--Quinoprotein_ADH-like_supfam
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	79.50	0.00e+00	1821.00
IUUC-Atr-002737	Amborella trichopoda	79.75	0.00e+00	1810.00
IUUC-Aly-005472	Arabidopsis lyrata	84.89	0.00e+00	1905.00
IUUC-Ath-007640	Arabidopsis thaliana	84.45	0.00e+00	1919.00
IUUC-Bdi-014914	Brachypodium distachyon	79.42	0.00e+00	1788.00
IUUC-Bol-016225	Brassica oleracea	84.61	0.00e+00	1930.00
IUUC-Bra-016893	Brassica rapa	84.94	0.00e+00	1881.00
IUUC-Gma-044036	Glycine max	88.37	0.00e+00	2014.00
IUUC-Hvu-047688	Hordeum vulgare	80.42	0.00e+00	1721.00
IUUC-Lpe-051514	Leersia perrieri	78.18	0.00e+00	1717.00
IUUC-Mtr-058037	Medicago truncatula	88.10	0.00e+00	1976.00
IUUC-Mac-065382	Musa acuminata	80.91	0.00e+00	1854.00
IUUC-Oba-075912	Oryza barthii	80.35	0.00e+00	1803.00
IUUC-Obr-076921	Oryza brachyantha	79.86	0.00e+00	1801.00
IUUC-Ogl-077334	Oryza glaberrima	80.21	0.00e+00	1807.00
IUUC-Ogu-078494	Oryza glumaepatula	80.21	0.00e+00	1807.00
IUUC-Oin-079720	Oryza indica	78.76	0.00e+00	1796.00
IUUC-Olo-081034	Oryza longistaminata	76.90	0.00e+00	1769.00
IUUC-Ome-081778	Oryza meridionalis	80.12	0.00e+00	1807.00
IUUC-Oni-082412	Oryza nivara	80.35	0.00e+00	1801.00
IUUC-Opu-083406	Oryza punctata	79.14	0.00e+00	1752.00
IUUC-Oru-084328	Oryza rufipogon	80.55	0.00e+00	1802.00
IUUC-Osa-085765	Oryza sativa	80.21	0.00e+00	1807.00
IUUC-Ppa-095814	Physcomitrella patens	69.29	0.00e+00	1561.00
IUUC-Pop-098876	Populus trichocarpa	87.55	0.00e+00	1994.00
IUUC-Ppe-101370	Prunus persica	90.12	0.00e+00	2083.00
IUUC-Smo-109617	Selaginella moellendorffii	70.21	0.00e+00	1544.00
IUUC-Sit-110288	Setaria italica	79.86	0.00e+00	1795.00
IUUC-Sly-111739	Solanum lycopersicum	85.83	0.00e+00	1971.00
IUUC-Sbi-114078	Sorghum bicolor	79.51	0.00e+00	1785.00
IUUC-Tae-125775	Triticum aestivum	80.28	0.00e+00	1833.00
IUUC-Tur-126412	Triticum urartu	78.45	0.00e+00	1814.00
IUUC-Vvi-131079	Vitis vinifera	88.75	0.00e+00	2001.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence