iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Opu-083125

Ensembl Protein ID

OPUNC06G18090.2

UniProt Accession

A0A0E0LD45; A0A0E0LD45_ORYPU

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OPUNC06G18090	OPUNC06G18090.1	OPUNC06G18090.1
OPUNC06G18090	OPUNC06G18090.2	OPUNC06G18090.2
OPUNC06G18090	OPUNC06G18090.3	OPUNC06G18090.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-32	109.4	198	229
UBD/Beta-Prp	9.10e-57	193.4	40	259

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH+  v++++f ++ +++++Gs Dgt+++W  
   Q: 198  GHAHNVSAVCFhPElPIIITGSEDGTVRLWHS 229
           8***********999***************75 PP

UBD/Beta-Prp

   S: 64   gkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGs 156
           +++ v g++D++i+v++++t + v ++++h+d++++++++p+  +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+s
   Q: 40   QQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASAS 133
           6799************************************************************9999************************** PP
   S: 157  lDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
           lDrtv++W+l + +   tl g h + v++++     ++++l++gs+d+t k+wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+
   Q: 134  LDRTVKIWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIIITGSEDGTVRL 226
           ********************9.*********7445566******************************************************** PP
   S: 249  Wdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           W +++  l +tl++  ++v++  +++ +++v++
   Q: 227  WHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 259
           ********************9998666666554 PP

Organism

Oryza punctata

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MRKLAQRSER VKSVDLHPTE PWIMSSLYSG SVCIWNYQTQ QWVVAGADDM FIRVYNYNTM 60
DKVKVFEAHT DYIRCVAVHP TLPYVLSSSD DMLIKLWDWD KGWMCTQIFE GHSHYVMQVT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTTAAATAT CTCCTCGTCG GAAGCCCGCC CGCCCGCTTC CCGAGACCCG TTTACCCGCT 60
ATTGTTCGTT ACCTTCCGCC GCACTAGCAC TGTCTTCTCC TCCTTCCTCT CTCTCTCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003090	Amborella trichopoda	77.55	0.00e+00	1409.00
IUUC-Pno-094785	Phaeosphaeria nodorum	59.04	8.00e-105	374.00
IUUC-Rno-105979	Rattus norvegicus	53.21	0.00e+00	773.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence