iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lpe-050712

Ensembl Protein ID

LPERR03G28500.1

UniProt Accession

A0A0D9VYX9; A0A0D9VYX9_9ORYZ

Protein Name

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LPERR03G28500	LPERR03G28500.1	LPERR03G28500.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-16	59.2	200	238

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd..tllvsGsdDgtikvWDlrtgv 34
           gHtd v+c+af   s+   +l+sG++D t+++WD+  g 
   Q: 200  GHTDFVSCIAFtclSEgpSFLLSGGGDSTVRLWDYINGC 238
           8************94455789*************86665 PP

Organism

Leersia perrieri

Functional Description
(View)

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.

Protein Sequence
(Fasta)

MEDAGIEEAE VSGGAEFAPA LVAAHPLGSS VAVAVGPELR VFDLKAGSAV SLSDDSGGSS 60
HSDAIRAISF SANGVLFASA GDDKLVKVWK TDSWCCIRTI TSEKRASAVA ISNDGTHLTF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGATG CTGGGATCGA GGAGGCGGAG GTGAGCGGCG GGGCGGAGTT CGCGCCGGCT 60
CTCGTCGCCG CCCACCCGCT CGGCAGCTCC GTCGCCGTCG CCGTCGGGCC CGAGCTCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0008618--P:7-methylguanosine metabolic process
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000556	Aegilops tauschii	75.96	4.00e-156	543.00
IUUC-Atr-002431	Amborella trichopoda	56.00	2.00e-34	137.00
IUUC-Apl-003975	Anas platyrhynchos	29.51	2.00e-24	105.00
IUUC-Aca-005170	Anolis carolinensis	34.48	3.00e-19	88.60
IUUC-Aly-005769	Arabidopsis lyrata	50.23	4.00e-112	397.00
IUUC-Ath-006733	Arabidopsis thaliana	48.82	6.00e-107	380.00
IUUC-Acl-008151	Aspergillus clavatus	24.92	7.00e-16	78.20
IUUC-Afu-009102	Aspergillus fumigatus	26.84	2.00e-13	70.10
IUUC-Aor-010133	Aspergillus oryzae	23.33	2.00e-12	66.60
IUUC-Ame-010613	Astyanax mexicanus	34.21	8.00e-24	104.00
IUUC-Bgr-012067	Blumeria graminis	36.49	2.00e-18	86.30
IUUC-Bta-012788	Bos taurus	31.97	1.00e-25	109.00
IUUC-Bdi-014458	Brachypodium distachyon	83.41	0.00e+00	630.00
IUUC-Bol-016398	Brassica oleracea	49.88	7.00e-101	360.00
IUUC-Bra-016644	Brassica rapa	51.54	2.00e-102	366.00
IUUC-Cpo-021963	Cavia porcellus	35.12	7.00e-22	97.40
IUUC-Csa-024148	Chlorocebus sabaeus	36.32	1.00e-16	80.10
IUUC-Cne-026834	Cryptococcus neoformans	29.00	2.00e-17	83.60
IUUC-Dre-028427	Danio rerio	30.35	2.00e-25	108.00
IUUC-Dor-030522	Dipodomys ordii	31.30	2.00e-24	105.00
IUUC-Dme-032136	Drosophila melanogaster	41.30	4.00e-13	68.60
IUUC-Fca-035833	Felis catus	32.79	1.00e-25	109.00
IUUC-Fal-037497	Ficedula albicollis	30.61	2.00e-23	102.00
IUUC-Gga-040547	Gallus gallus	30.29	1.00e-23	103.00
IUUC-Gac-041761	Gasterosteus aculeatus	31.10	9.00e-22	97.10
IUUC-Gma-043722	Glycine max	51.86	1.00e-103	369.00
IUUC-Ggo-045340	Gorilla gorilla	36.32	8.00e-16	77.40
IUUC-Hsa-046403	Homo sapiens	36.65	1.00e-17	83.20
IUUC-Hvu-047643	Hordeum vulgare	80.29	3.00e-174	603.00
IUUC-Itr-048103	Ictidomys tridecemlineatus	32.51	9.00e-26	110.00
IUUC-Kpa-049283	Komagataella pastoris	34.64	1.00e-17	83.60
IUUC-Lch-050682	Latimeria chalumnae	33.47	9.00e-27	113.00
IUUC-Loc-052599	Lepisosteus oculatus	35.86	5.00e-29	121.00
IUUC-Laf-054390	Loxodonta africana	32.38	2.00e-25	109.00
IUUC-Mcc-054747	Macaca mulatta	31.15	3.00e-17	82.00
IUUC-Mtr-058600	Medicago truncatula	50.24	2.00e-106	378.00
IUUC-Mla-059135	Melampsora laricipopulina	29.12	4.00e-17	82.00
IUUC-Mga-059876	Meleagris gallopavo	31.58	1.00e-22	99.80
IUUC-Mvi-060359	Microbotryum violaceum	27.81	7.00e-12	65.10
IUUC-Mmr-061518	Microcebus murinus	31.05	4.00e-22	98.20
IUUC-Mac-065417	Musa acuminata	56.50	3.00e-122	431.00
IUUC-Nfi-068402	Neosartorya fischeri	28.52	5.00e-15	75.10
IUUC-Nle-069914	Nomascus leucogenys	30.20	2.00e-14	73.20
IUUC-Ont-071555	Oreochromis niloticus	32.62	4.00e-25	108.00
IUUC-Oan-072951	Ornithorhynchus anatinus	33.47	2.00e-27	115.00
IUUC-Ocu-074679	Oryctolagus cuniculus	31.87	7.00e-19	87.40
IUUC-Oba-075355	Oryza barthii	84.12	0.00e+00	682.00
IUUC-Obr-076769	Oryza brachyantha	89.63	0.00e+00	777.00
IUUC-Ogl-077168	Oryza glaberrima	91.15	0.00e+00	756.00
IUUC-Ogu-078275	Oryza glumaepatula	83.65	0.00e+00	677.00
IUUC-Oin-079207	Oryza indica	91.15	0.00e+00	756.00
IUUC-Ome-081169	Oryza meridionalis	66.59	3.00e-137	481.00
IUUC-Oni-082437	Oryza nivara	84.12	0.00e+00	677.00
IUUC-Opu-084031	Oryza punctata	90.43	0.00e+00	744.00
IUUC-Oru-084380	Oryza rufipogon	83.89	0.00e+00	680.00
IUUC-Osa-085327	Oryza sativa	90.91	0.00e+00	754.00
IUUC-Ola-086716	Oryzias latipes	32.05	8.00e-22	97.40
IUUC-Olu-087708	Ostreococcus lucimarinus	34.71	1.00e-31	129.00
IUUC-Oar-090239	Ovis aries	31.56	3.00e-25	108.00
IUUC-Ptr-090851	Pan troglodytes	36.65	3.00e-16	79.00
IUUC-Pan-092558	Papio anubis	36.32	1.00e-16	80.50
IUUC-Psi-093792	Pelodiscus sinensis	29.39	1.00e-22	99.80
IUUC-Ppa-095757	Physcomitrella patens	40.85	4.00e-71	261.00
IUUC-Pfo-096465	Poecilia formosa	30.32	8.00e-24	103.00
IUUC-Pab-097722	Pongo abelii	36.13	2.00e-16	79.30
IUUC-Pop-098979	Populus trichocarpa	50.79	3.00e-110	391.00
IUUC-Pca-100753	Procavia capensis	34.59	4.00e-17	81.60
IUUC-Ppe-101515	Prunus persica	56.65	1.00e-122	432.00
IUUC-Sja-107780	Schizosaccharomyces japonicus	28.83	3.00e-15	75.90
IUUC-Spo-108251	Schizosaccharomyces pombe	28.02	2.00e-16	79.30
IUUC-Smo-108938	Selaginella moellendorffii	39.91	6.00e-68	251.00
IUUC-Sit-110020	Setaria italica	81.99	0.00e+00	672.00
IUUC-Sly-111543	Solanum lycopersicum	52.97	3.00e-121	427.00
IUUC-Stu-111925	Solanum tuberosum	52.51	3.00e-120	424.00
IUUC-Sbi-114061	Sorghum bicolor	80.37	0.00e+00	671.00
IUUC-Tgu-117321	Taeniopygia guttata	30.20	1.00e-19	89.70
IUUC-Tru-118454	Takifugu rubripes	30.19	3.00e-23	102.00
IUUC-Tni-119894	Tetraodon nigroviridis	34.05	6.00e-22	97.80
IUUC-Tca-121746	Theobroma cacao	54.59	4.00e-119	420.00
IUUC-Tae-123054	Triticum aestivum	80.82	9.00e-175	605.00
IUUC-Tur-126254	Triticum urartu	74.39	1.00e-145	508.00
IUUC-Tbe-127683	Tupaia belangeri	50.60	3.00e-15	75.50
IUUC-Ttr-129056	Tursiops truncatus	36.36	7.00e-24	104.00
IUUC-Vvi-131428	Vitis vinifera	51.83	1.00e-120	426.00
IUUC-Xma-133605	Xiphophorus maculatus	29.96	2.00e-21	95.90

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence