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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-006754
UUCD1 version UUC-ArT-01556
Ensembl Protein ID AT1G10560.1
UniProt Accession Q9XIJ5; Q8S9I5; PUB18_ARATH
Genbank Protein ID AAD39579.1; AEE28594.1; AAL77690.1
Protein Name U-box domain-containing protein 18; Plant U-box protein 18; RING-type E3 ubiquitin transferase PUB18
Genbank Nucleotide ID AC007067; CP002684; AY075683
Gene Name PUB18; At1g10560; T10O24.19
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G10560 AT1G10560.1 AT1G10560.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/U-box U-box 14657406
Classification
Family E-value Score Start End
E3 activity/RING/U-box 6.10e-28 97.6 290 360
E3 activity/RING/RING 0.012 17.0 294 331
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
    e++lCpIsle+M+dPvv+++G+tydrssI kw+ sg+ tcP+t++ lt+++lv+n ++r++i ++c++n++
   Q: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTELVDNVSVRQVIRKHCKTNGI 360
    789*****************************************************************985 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPl 44
    C+i le + d p+v gH++ ++ + kw + s++++CP+
   Q: 294 CPISLEIMTD-PVVIETGHTYDRSSITKW-----FGSGNITCPI 331
    **********.999***************.....9********6 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Functions as an E3 ubiquitin ligase.
Functions as an E3 ubiquitin ligase.
Protein Sequence
(Fasta)
MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR 60
RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ KLKFLLEDCT RDGARLCMMM 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-006754|E3,U-box;E3,RING|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTTTCCTCGT TTTCGACGGA TCTCACGTGG CACTCTGTCA GTGGTCAGGG TTTCCAAGTA 60
ACATTGTCCA ATGATACACC ACCACGCGCT CTAATTAAAG TTGAAACCTT TGTCAACTCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006754|E3,U-box;E3,RING|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0016567--P:protein ubiquitination
GO:0010029--P:regulation of seed germination

KEGG ath:AT1G10560
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-006201 Arabidopsis lyrata 91.10 0.00e+00 1247.00
IUUC-Bol-015964 Brassica oleracea 78.71 0.00e+00 1071.00
IUUC-Bra-017789 Brassica rapa 77.60 0.00e+00 1028.00
IUUC-Lpe-051010 Leersia perrieri 36.82 9.00e-77 280.00
IUUC-Loc-051960 Lepisosteus oculatus 27.17 8.00e-13 67.80
IUUC-Obr-076695 Oryza brachyantha 38.10 4.00e-62 231.00
IUUC-Ogl-077133 Oryza glaberrima 39.12 1.00e-80 293.00
IUUC-Ogu-078633 Oryza glumaepatula 38.46 2.00e-80 292.00
IUUC-Oin-079248 Oryza indica 38.02 3.00e-79 289.00
IUUC-Ome-081678 Oryza meridionalis 38.46 6.00e-80 291.00
IUUC-Oni-082545 Oryza nivara 38.24 4.00e-80 291.00
IUUC-Oru-084317 Oryza rufipogon 38.24 7.00e-80 291.00
IUUC-Osa-085294 Oryza sativa 38.02 2.00e-79 289.00
IUUC-Sly-111130 Solanum lycopersicum 41.88 1.00e-148 519.00
IUUC-Tru-118470 Takifugu rubripes 24.55 2.00e-09 56.60
Created Date 25-Jun-2017

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