iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111739

Ensembl Protein ID

Solyc03g117360.2.1

UniProt Accession

K4BLN8; K4BLN8_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc03g117360.2	Solyc03g117360.2.1	Solyc03g117360.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.80e-23	80.8	459	494
UBD/Beta-Prp	3.90e-43	148.5	418	681

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd..tllvsGsdDgtikvWDlrtg 33
           H ++v++laf  ++    +++++dD+tikvWD ++g
   Q: 459  HVGGVNDLAFshPNkqLSVITCGDDKTIKVWDATSG 494
           999*******996643448*************8876 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
           ++ v +spd+sl+ +++ ++ +++++++  +      ++  h ++v+++ fs+  k    +t+++D+tikvwd  +g   +t++ghe+ v+
   Q: 418  VNRVIWSPDGSLFGVAYSRHIVQIYSYHGNDDirqHVEIDAHVGGVNDLAFSHPNKqlSVITCGDDKTIKVWDATSGARQYTFEGHEAPVY 508
           667889*********************99988333445689**********999888889******************************* PP
   S: 99   slsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl..Dr..tvrlWdlktgkllrtltgghtdsv 183
           s+  +   + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg  l+s+++  D+   +  W+ + g + rt +g  ++s 
   Q: 509  SVCPHHkeTIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRLFSCGTskDGesHIVEWNESEGAVKRTYQGFRKRSL 598
           *887776455***************99987777745555.5599999999999888888642254334666*99***************** PP
   S: 184  yslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks..vrfspnderlvsgssDgsiriW.dlrsgdllktlqlh 263
             ++fd ++++++++++d ++k+wd+ +   + +  +    + s  +rf +++ +l++ + ++ i+i  + +   l++t+++ 
   Q: 599  GVVQFDTTKNRFLAAGDDFSIKFWDMDHVPLLTSIDADGGLPASprIRFNKDGSLLAVSANENGIKILaNNDGIRLIRTFENL 681
           ***************************99988888888876665337888999999999999999995444444444444443 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKRDR SKGVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCATCTC TCAGTAGAGA GCTTGTATTC TTGATCTTAC AGTTTCTAGA TGAGGAGAAG 60
TTCAAAGAAA CAGTTCACAA GTATGTACCT ATTTCAATTT CAATGCTTTC ATTTTTACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

KEGG

sly:101252765

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	79.18	0.00e+00	1812.00
IUUC-Aly-005995	Arabidopsis lyrata	82.11	0.00e+00	1854.00
IUUC-Ath-007021	Arabidopsis thaliana	82.45	0.00e+00	1865.00
IUUC-Bdi-014914	Brachypodium distachyon	78.44	0.00e+00	1776.00
IUUC-Bol-015359	Brassica oleracea	82.54	0.00e+00	1835.00
IUUC-Bra-016893	Brassica rapa	82.21	0.00e+00	1825.00
IUUC-Gma-043911	Glycine max	85.81	0.00e+00	1947.00
IUUC-Hvu-047688	Hordeum vulgare	79.83	0.00e+00	1721.00
IUUC-Lpe-051514	Leersia perrieri	77.84	0.00e+00	1706.00
IUUC-Mtr-058037	Medicago truncatula	85.48	0.00e+00	1898.00
IUUC-Mac-065154	Musa acuminata	80.80	0.00e+00	1791.00
IUUC-Oba-075912	Oryza barthii	80.55	0.00e+00	1792.00
IUUC-Obr-076921	Oryza brachyantha	80.11	0.00e+00	1794.00
IUUC-Ogl-077334	Oryza glaberrima	80.21	0.00e+00	1803.00
IUUC-Ogu-078494	Oryza glumaepatula	80.21	0.00e+00	1803.00
IUUC-Oin-079720	Oryza indica	78.79	0.00e+00	1796.00
IUUC-Olo-081034	Oryza longistaminata	78.15	0.00e+00	1768.00
IUUC-Ome-081778	Oryza meridionalis	80.12	0.00e+00	1803.00
IUUC-Oni-082412	Oryza nivara	80.55	0.00e+00	1792.00
IUUC-Opu-083406	Oryza punctata	78.61	0.00e+00	1738.00
IUUC-Oru-084328	Oryza rufipogon	80.30	0.00e+00	1795.00
IUUC-Osa-085765	Oryza sativa	80.21	0.00e+00	1803.00
IUUC-Pop-098876	Populus trichocarpa	83.32	0.00e+00	1903.00
IUUC-Ppe-101370	Prunus persica	86.85	0.00e+00	2005.00
IUUC-Smo-109617	Selaginella moellendorffii	69.77	0.00e+00	1511.00
IUUC-Sit-110288	Setaria italica	79.03	0.00e+00	1779.00
IUUC-Stu-112574	Solanum tuberosum	99.43	0.00e+00	1757.00
IUUC-Sbi-114078	Sorghum bicolor	79.38	0.00e+00	1769.00
IUUC-Tca-121628	Theobroma cacao	85.21	0.00e+00	1939.00
IUUC-Tae-125775	Triticum aestivum	79.55	0.00e+00	1818.00
IUUC-Tur-126412	Triticum urartu	79.16	0.00e+00	1801.00
IUUC-Vvi-131079	Vitis vinifera	85.00	0.00e+00	1945.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence