iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    CaiCledfkdg...plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+ fk++     +++C+H+fh+ Cl +w     + +++ +CPlCr
   Q: 85   CCVCLCGFKEEeevSELVSCKHFFHRACLDNW-----FGNNHTTCPLCR 128
           ********55544467899*************.....9**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGLSHFPTAS EGVLPLLVMN TVVSITLLKN MVRSVFQIVA SETESSMEID DEPEDDFVTR 60
RISITQFKSL CENIEEEEEE KGVECCVCLC GFKEEEEVSE LVSCKHFFHR ACLDNWFGNN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAACCAACCT ATTATTGAGT CACAATCAAA TTGTGGGAGA TGAGTCTCTA ACGATAACCT 60
CTCTCTTGGT GACACGTGTT TAGACCACCG CTGCTTAATA AACCCAATCG CCCACCGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G24580

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002995	Amborella trichopoda	43.66	9.00e-24	101.00
IUUC-Aly-005925	Arabidopsis lyrata	88.97	8.00e-47	178.00
IUUC-Bol-016497	Brassica oleracea	77.70	4.00e-36	142.00
IUUC-Bra-018002	Brassica rapa	83.70	7.00e-34	135.00
IUUC-Gma-042813	Glycine max	57.78	7.00e-34	135.00
IUUC-Mtr-058286	Medicago truncatula	47.02	1.00e-30	124.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence