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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007635
UUCD1 version UUC-ArT-00752
Ensembl Protein ID AT1G52360.2
UniProt Accession F4ICX0; F4ICX0_ARATH
Genbank Protein ID AEE32793.1
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID CP002684
Gene Name At1g52360; F19K6.16; F19K6_16
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G52360 AT1G52360.2 AT1G52360.2
AT1G52360 AT1G52360.4 AT1G52360.4
AT1G52360 AT1G52360.3 AT1G52360.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.10e-35 120.9 228 268
UBD/Beta-Prp 3.80e-66 224.2 58 333
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 228  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 268
           999*****966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
           +++++++v+ +p +++++++ ++gt+ +w+++t+ + +s++  e +v++ kf  ++++ v g++D+ i+v++++t + v ++++h+d++++++++p+ 
   Q: 58   RSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTL 155
           5678999******************************************************************************************* PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsld 201
            +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h++ v++++     ++++l++gs+d
   Q: 156  PYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDyfTGGDKPYLITGSDD 252
           *********************9999*********************************************98.*********6444555********* PP
   S: 202  gtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvl 282
            t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW  ++  l +tl++  ++v+++ +++ +++v++ 
   Q: 253  HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIG 333
           *********************************************************************997777777654 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MFLFDLSNLI RIFACRWREF ECSLMTFFCV ELSNDHGCCI LRRSEPLRLE IKRKLAQRSE 60
RVKSVDLHPT EPWILASLYS GTLCIWNYQT QVMAKSFEVT ELPVRSAKFV ARKQWVVAGA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007635|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTCTACGCTT AATCTGTAAC TATGGTGAGT TCTGGAACCT TTCCTCCACT TTTGTGTTTT 60
CAGATCTCGA GTGAATCCGT GTACGATTTC GATCTCGATT TCGTACATTT CTTCTGCGAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007635|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002154 Ailuropoda melanoleuca 60.78 0.00e+00 1107.00
IUUC-Atr-003090 Amborella trichopoda 76.67 0.00e+00 1486.00
IUUC-Aly-006508 Arabidopsis lyrata 98.49 0.00e+00 1793.00
IUUC-Afl-008535 Aspergillus flavus 51.33 0.00e+00 850.00
IUUC-Ang-009654 Aspergillus niger 56.36 0.00e+00 812.00
IUUC-Ame-010922 Astyanax mexicanus 56.23 0.00e+00 965.00
IUUC-Bdi-015046 Brachypodium distachyon 77.77 0.00e+00 1506.00
IUUC-Bol-016271 Brassica oleracea 93.73 0.00e+00 1735.00
IUUC-Bra-017758 Brassica rapa 92.65 0.00e+00 1732.00
IUUC-Cel-018387 Caenorhabditis elegans 53.95 0.00e+00 975.00
IUUC-Cpo-022201 Cavia porcellus 60.78 0.00e+00 1108.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 65.09 0.00e+00 1099.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 50.06 0.00e+00 802.00
IUUC-Cne-026986 Cryptococcus neoformans 49.58 0.00e+00 863.00
IUUC-Cme-027219 Cyanidioschyzon merolae 51.56 0.00e+00 878.00
IUUC-Dme-031791 Drosophila melanogaster 57.04 0.00e+00 996.00
IUUC-Eca-034180 Equus caballus 59.53 0.00e+00 1068.00
IUUC-Eeu-035086 Erinaceus europaeus 49.06 2.00e-124 439.00
IUUC-Fox-037711 Fusarium oxysporum 53.98 0.00e+00 853.00
IUUC-Fso-038268 Fusarium solani 53.80 0.00e+00 861.00
IUUC-Ggr-039863 Gaeumannomyces graminis 53.43 0.00e+00 881.00
IUUC-Gma-044126 Glycine max 87.04 0.00e+00 1655.00
IUUC-Hvu-047669 Hordeum vulgare 88.17 0.00e+00 691.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 61.86 0.00e+00 1105.00
IUUC-Laf-053757 Loxodonta africana 59.09 0.00e+00 1104.00
IUUC-Meu-056174 Macropus eugenii 52.39 8.00e-111 394.00
IUUC-Mpo-057538 Magnaporthe poae 53.06 0.00e+00 885.00
IUUC-Mtr-058618 Medicago truncatula 86.38 0.00e+00 1612.00
IUUC-Mmu-063324 Mus musculus 60.78 0.00e+00 1109.00
IUUC-Mlu-067059 Myotis lucifugus 59.95 0.00e+00 1094.00
IUUC-Ncr-068659 Neurospora crassa 53.01 0.00e+00 894.00
IUUC-Ocu-074522 Oryctolagus cuniculus 60.23 0.00e+00 1104.00
IUUC-Oba-075760 Oryza barthii 78.90 0.00e+00 1504.00
IUUC-Obr-076163 Oryza brachyantha 79.48 0.00e+00 1509.00
IUUC-Ogl-077450 Oryza glaberrima 79.89 0.00e+00 1534.00
IUUC-Ogu-078994 Oryza glumaepatula 78.90 0.00e+00 1503.00
IUUC-Oin-079856 Oryza indica 79.01 0.00e+00 1484.00
IUUC-Olo-080731 Oryza longistaminata 78.02 0.00e+00 1484.00
IUUC-Ome-081762 Oryza meridionalis 77.12 0.00e+00 1383.00
IUUC-Oni-082324 Oryza nivara 78.90 0.00e+00 1504.00
IUUC-Opu-083400 Oryza punctata 77.22 0.00e+00 1479.00
IUUC-Oru-084829 Oryza rufipogon 79.03 0.00e+00 1507.00
IUUC-Olu-087655 Ostreococcus lucimarinus 67.16 0.00e+00 1150.00
IUUC-Oga-088163 Otolemur garnettii 58.70 0.00e+00 1054.00
IUUC-Ppa-095911 Physcomitrella patens 76.21 0.00e+00 1382.00
IUUC-Pop-099634 Populus trichocarpa 85.98 0.00e+00 1615.00
IUUC-Pca-100965 Procavia capensis 59.83 0.00e+00 1071.00
IUUC-Ppe-101470 Prunus persica 86.70 0.00e+00 1651.00
IUUC-Pgr-103453 Puccinia graminis 52.60 0.00e+00 900.00
IUUC-Ptt-103868 Puccinia triticina 52.88 0.00e+00 899.00
IUUC-Spo-108299 Schizosaccharomyces pombe 46.97 0.00e+00 801.00
IUUC-Sly-111775 Solanum lycopersicum 82.92 0.00e+00 1590.00
IUUC-Stu-112906 Solanum tuberosum 82.47 0.00e+00 1449.00
IUUC-Sre-115040 Sporisorium reilianum 53.06 0.00e+00 902.00
IUUC-Tca-121613 Theobroma cacao 87.46 0.00e+00 1685.00
IUUC-Tre-122072 Trichoderma reesei 53.06 0.00e+00 887.00
IUUC-Tae-125292 Triticum aestivum 80.78 0.00e+00 1550.00
IUUC-Tme-127041 Tuber melanosporum 53.19 0.00e+00 905.00
IUUC-Ttr-129294 Tursiops truncatus 60.00 0.00e+00 1104.00
IUUC-Uma-129351 Ustilago maydis 51.10 0.00e+00 883.00
IUUC-Vda-129716 Verticillium dahliae 53.38 0.00e+00 901.00
IUUC-Vpa-130037 Vicugna pacos 50.00 1.00e-129 456.00
IUUC-Vvi-131689 Vitis vinifera 89.04 0.00e+00 1604.00
Created Date 25-Jun-2017

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